Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18295

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18285 and ABZR87_RS18290 are separated by 40 nucleotidesABZR87_RS18290 and ABZR87_RS18295 are separated by 72 nucleotidesABZR87_RS18295 and ABZR87_RS18300 are separated by 177 nucleotidesABZR87_RS18300 and ABZR87_RS18305 are separated by 23 nucleotides ABZR87_RS18285: ABZR87_RS18285 - helix-turn-helix domain-containing protein, at 471,995 to 472,981 _RS18285 ABZR87_RS18290: ABZR87_RS18290 - glycine zipper 2TM domain-containing protein, at 473,022 to 473,204 _RS18290 ABZR87_RS18295: ABZR87_RS18295 - YggT family protein, at 473,277 to 473,837 _RS18295 ABZR87_RS18300: ABZR87_RS18300 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 474,015 to 474,578 _RS18300 ABZR87_RS18305: ABZR87_RS18305 - substrate-binding domain-containing protein, at 474,602 to 475,384 _RS18305 Position (kb) 473 474Strain fitness (log2 ratio) -2 -1 0 1 2at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.308 kb on - strand, within ABZR87_RS18285at 472.440 kb on + strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.463 kb on + strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.829 kb on + strand, within ABZR87_RS18285at 472.934 kb on + strandat 472.934 kb on + strandat 472.934 kb on + strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.955 kb on + strandat 473.023 kb on + strandat 473.023 kb on + strandat 473.024 kb on - strandat 473.024 kb on - strandat 473.024 kb on - strandat 473.070 kb on + strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.178 kb on + strand, within ABZR87_RS18290at 473.179 kb on - strand, within ABZR87_RS18290at 473.179 kb on - strand, within ABZR87_RS18290at 473.245 kb on + strandat 473.246 kb on - strandat 473.246 kb on - strandat 473.605 kb on + strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.623 kb on + strand, within ABZR87_RS18295at 473.624 kb on - strand, within ABZR87_RS18295at 473.652 kb on - strand, within ABZR87_RS18295at 473.653 kb on + strand, within ABZR87_RS18295at 473.653 kb on + strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.826 kb on - strandat 473.971 kb on + strandat 474.306 kb on + strand, within ABZR87_RS18300at 474.399 kb on + strand, within ABZR87_RS18300at 474.441 kb on + strand, within ABZR87_RS18300at 474.441 kb on + strand, within ABZR87_RS18300at 474.533 kb on + strandat 474.533 kb on + strandat 474.533 kb on + strandat 474.533 kb on + strandat 474.533 kb on + strandat 474.534 kb on - strandat 474.534 kb on - strandat 474.603 kb on + strandat 474.729 kb on + strand, within ABZR87_RS18305at 474.729 kb on + strand, within ABZR87_RS18305at 474.730 kb on - strand, within ABZR87_RS18305at 474.738 kb on + strand, within ABZR87_RS18305at 474.739 kb on - strand, within ABZR87_RS18305at 474.771 kb on + strand, within ABZR87_RS18305at 474.771 kb on + strand, within ABZR87_RS18305at 474.772 kb on - strand, within ABZR87_RS18305

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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472,307 + ABZR87_RS18285 0.32 +0.7
472,307 + ABZR87_RS18285 0.32 +0.9
472,307 + ABZR87_RS18285 0.32 -2.7
472,307 + ABZR87_RS18285 0.32 -2.0
472,308 - ABZR87_RS18285 0.32 -0.2
472,440 + ABZR87_RS18285 0.45 -0.8
472,441 - ABZR87_RS18285 0.45 -0.7
472,441 - ABZR87_RS18285 0.45 +1.7
472,463 + ABZR87_RS18285 0.47 +1.0
472,464 - ABZR87_RS18285 0.48 -2.2
472,464 - ABZR87_RS18285 0.48 -1.0
472,464 - ABZR87_RS18285 0.48 -0.0
472,625 + ABZR87_RS18285 0.64 +0.8
472,625 + ABZR87_RS18285 0.64 -2.7
472,625 + ABZR87_RS18285 0.64 +0.3
472,626 - ABZR87_RS18285 0.64 +0.9
472,626 - ABZR87_RS18285 0.64 -0.6
472,626 - ABZR87_RS18285 0.64 +0.8
472,829 + ABZR87_RS18285 0.84 +0.2
472,934 + -0.9
472,934 + -1.1
472,934 + -1.3
472,935 - -0.4
472,935 - -0.7
472,935 - +0.2
472,935 - -2.2
472,955 + +1.9
473,023 + +0.8
473,023 + +1.0
473,024 - +0.9
473,024 - +1.0
473,024 - -0.1
473,070 + ABZR87_RS18290 0.26 +0.0
473,071 - ABZR87_RS18290 0.27 -0.3
473,071 - ABZR87_RS18290 0.27 +1.5
473,071 - ABZR87_RS18290 0.27 -1.9
473,178 + ABZR87_RS18290 0.85 -2.3
473,179 - ABZR87_RS18290 0.86 +0.5
473,179 - ABZR87_RS18290 0.86 -0.8
473,245 + -0.1
473,246 - +0.2
473,246 - +0.1
473,605 + ABZR87_RS18295 0.58 +1.5
473,606 - ABZR87_RS18295 0.59 -0.4
473,606 - ABZR87_RS18295 0.59 +0.5
473,606 - ABZR87_RS18295 0.59 -0.0
473,623 + ABZR87_RS18295 0.62 +1.0
473,624 - ABZR87_RS18295 0.62 +0.7
473,652 - ABZR87_RS18295 0.67 +0.2
473,653 + ABZR87_RS18295 0.67 +0.7
473,653 + ABZR87_RS18295 0.67 +0.1
473,654 - ABZR87_RS18295 0.67 -2.4
473,654 - ABZR87_RS18295 0.67 +0.0
473,654 - ABZR87_RS18295 0.67 -0.0
473,654 - ABZR87_RS18295 0.67 +1.3
473,654 - ABZR87_RS18295 0.67 +1.9
473,826 - -0.4
473,971 + -0.3
474,306 + ABZR87_RS18300 0.52 +1.2
474,399 + ABZR87_RS18300 0.68 -0.7
474,441 + ABZR87_RS18300 0.76 +1.1
474,441 + ABZR87_RS18300 0.76 -0.9
474,533 + -0.6
474,533 + -1.0
474,533 + -1.6
474,533 + -0.8
474,533 + -0.6
474,534 - -1.0
474,534 - +0.3
474,603 + -1.1
474,729 + ABZR87_RS18305 0.16 -0.9
474,729 + ABZR87_RS18305 0.16 -1.0
474,730 - ABZR87_RS18305 0.16 +1.0
474,738 + ABZR87_RS18305 0.17 -1.0
474,739 - ABZR87_RS18305 0.17 -2.0
474,771 + ABZR87_RS18305 0.22 -1.4
474,771 + ABZR87_RS18305 0.22 -0.6
474,772 - ABZR87_RS18305 0.22 -0.5

Or see this region's nucleotide sequence