Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17840 and ABZR87_RS17845 are separated by 148 nucleotides ABZR87_RS17845 and ABZR87_RS17850 overlap by 8 nucleotides ABZR87_RS17850 and ABZR87_RS17855 are separated by 9 nucleotides
ABZR87_RS17840: ABZR87_RS17840 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 360,931 to 361,929
_RS17840
ABZR87_RS17845: ABZR87_RS17845 - Crp/Fnr family transcriptional regulator, at 362,078 to 362,782
_RS17845
ABZR87_RS17850: ABZR87_RS17850 - 2-hydroxychromene-2-carboxylate isomerase, at 362,775 to 363,410
_RS17850
ABZR87_RS17855: ABZR87_RS17855 - 3-oxoacid CoA-transferase subunit B, at 363,420 to 364,094
_RS17855
Position (kb) 362
363 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 361.079 kb on + strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.084 kb on - strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.188 kb on - strand, within ABZR87_RS17840 at 361.277 kb on + strand, within ABZR87_RS17840 at 361.278 kb on - strand, within ABZR87_RS17840 at 361.278 kb on - strand, within ABZR87_RS17840 at 361.340 kb on + strand, within ABZR87_RS17840 at 361.358 kb on + strand, within ABZR87_RS17840 at 361.358 kb on + strand, within ABZR87_RS17840 at 361.358 kb on + strand, within ABZR87_RS17840 at 361.359 kb on - strand, within ABZR87_RS17840 at 361.374 kb on + strand, within ABZR87_RS17840 at 361.520 kb on + strand, within ABZR87_RS17840 at 361.521 kb on - strand, within ABZR87_RS17840 at 361.521 kb on - strand, within ABZR87_RS17840 at 361.821 kb on - strand, within ABZR87_RS17840 at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.994 kb on + strand at 361.994 kb on + strand at 361.994 kb on + strand at 361.995 kb on - strand at 361.995 kb on - strand at 362.025 kb on - strand at 362.025 kb on - strand at 362.064 kb on + strand at 362.065 kb on - strand at 362.088 kb on + strand at 362.088 kb on + strand at 362.089 kb on - strand at 362.089 kb on - strand at 362.089 kb on - strand at 362.089 kb on - strand at 362.130 kb on + strand at 362.256 kb on + strand, within ABZR87_RS17845 at 362.326 kb on - strand, within ABZR87_RS17845 at 362.326 kb on - strand, within ABZR87_RS17845 at 362.472 kb on + strand, within ABZR87_RS17845 at 362.725 kb on + strand at 363.077 kb on + strand, within ABZR87_RS17850 at 363.077 kb on + strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.220 kb on + strand, within ABZR87_RS17850 at 363.676 kb on + strand, within ABZR87_RS17855
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 361,079 + ABZR87_RS17840 0.15 +0.8 361,080 - ABZR87_RS17840 0.15 +1.5 361,080 - ABZR87_RS17840 0.15 +2.4 361,080 - ABZR87_RS17840 0.15 +2.4 361,080 - ABZR87_RS17840 0.15 -0.5 361,084 - ABZR87_RS17840 0.15 -0.9 361,187 + ABZR87_RS17840 0.26 -0.2 361,187 + ABZR87_RS17840 0.26 +1.1 361,187 + ABZR87_RS17840 0.26 -0.2 361,187 + ABZR87_RS17840 0.26 -0.7 361,188 - ABZR87_RS17840 0.26 +0.4 361,277 + ABZR87_RS17840 0.35 +1.3 361,278 - ABZR87_RS17840 0.35 +1.3 361,278 - ABZR87_RS17840 0.35 +0.6 361,340 + ABZR87_RS17840 0.41 +0.4 361,358 + ABZR87_RS17840 0.43 +0.3 361,358 + ABZR87_RS17840 0.43 -0.7 361,358 + ABZR87_RS17840 0.43 -1.1 361,359 - ABZR87_RS17840 0.43 -1.9 361,374 + ABZR87_RS17840 0.44 -1.4 361,520 + ABZR87_RS17840 0.59 +0.8 361,521 - ABZR87_RS17840 0.59 -0.5 361,521 - ABZR87_RS17840 0.59 +0.6 361,821 - ABZR87_RS17840 0.89 -2.2 361,917 + -0.3 361,917 + +0.4 361,917 + -1.7 361,917 + -0.2 361,917 + +0.7 361,917 + +3.4 361,917 + -1.8 361,917 + -0.4 361,917 + -1.7 361,917 + -1.2 361,917 + -0.9 361,917 + +0.1 361,917 + -0.3 361,918 - +1.6 361,918 - -1.8 361,918 - +0.7 361,918 - +0.7 361,918 - +0.6 361,918 - -0.8 361,918 - -1.7 361,918 - +0.7 361,918 - -0.5 361,918 - +0.3 361,994 + +0.6 361,994 + +2.2 361,994 + +2.4 361,995 - -1.3 361,995 - -0.9 362,025 - -2.2 362,025 - -0.6 362,064 + -1.0 362,065 - +0.5 362,088 + -1.0 362,088 + -1.5 362,089 - -1.3 362,089 - +1.5 362,089 - -0.6 362,089 - +0.9 362,130 + +2.5 362,256 + ABZR87_RS17845 0.25 -0.1 362,326 - ABZR87_RS17845 0.35 -2.3 362,326 - ABZR87_RS17845 0.35 -2.4 362,472 + ABZR87_RS17845 0.56 -0.8 362,725 + +1.1 363,077 + ABZR87_RS17850 0.47 -0.2 363,077 + ABZR87_RS17850 0.47 +1.6 363,078 - ABZR87_RS17850 0.48 -2.1 363,078 - ABZR87_RS17850 0.48 -0.6 363,078 - ABZR87_RS17850 0.48 +2.9 363,220 + ABZR87_RS17850 0.70 -0.9 363,676 + ABZR87_RS17855 0.38 -0.8
Or see this region's nucleotide sequence