Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17425

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17420 and ABZR87_RS17425 are separated by 64 nucleotidesABZR87_RS17425 and ABZR87_RS17430 are separated by 28 nucleotides ABZR87_RS17420: ABZR87_RS17420 - UbiD family decarboxylase, at 266,704 to 268,095 _RS17420 ABZR87_RS17425: ABZR87_RS17425 - amidohydrolase family protein, at 268,160 to 269,083 _RS17425 ABZR87_RS17430: ABZR87_RS17430 - amidohydrolase family protein, at 269,112 to 270,023 _RS17430 Position (kb) 268 269 270Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 267.394 kb on - strand, within ABZR87_RS17420at 267.394 kb on - strand, within ABZR87_RS17420at 267.617 kb on + strand, within ABZR87_RS17420at 267.617 kb on + strand, within ABZR87_RS17420at 267.618 kb on - strand, within ABZR87_RS17420at 267.618 kb on - strand, within ABZR87_RS17420at 267.618 kb on - strand, within ABZR87_RS17420at 267.677 kb on + strand, within ABZR87_RS17420at 267.678 kb on - strand, within ABZR87_RS17420at 268.109 kb on + strandat 268.110 kb on - strandat 268.185 kb on + strandat 268.186 kb on - strandat 268.278 kb on + strand, within ABZR87_RS17425at 268.278 kb on + strand, within ABZR87_RS17425at 268.279 kb on - strand, within ABZR87_RS17425at 268.464 kb on + strand, within ABZR87_RS17425at 268.510 kb on - strand, within ABZR87_RS17425at 268.582 kb on - strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.800 kb on + strand, within ABZR87_RS17425at 268.801 kb on - strand, within ABZR87_RS17425at 268.854 kb on + strand, within ABZR87_RS17425at 268.855 kb on - strand, within ABZR87_RS17425at 268.855 kb on - strand, within ABZR87_RS17425at 268.855 kb on - strand, within ABZR87_RS17425at 268.863 kb on + strand, within ABZR87_RS17425at 268.864 kb on - strand, within ABZR87_RS17425at 268.906 kb on - strand, within ABZR87_RS17425at 268.974 kb on + strand, within ABZR87_RS17425at 268.975 kb on - strand, within ABZR87_RS17425at 268.975 kb on - strand, within ABZR87_RS17425at 269.072 kb on - strandat 269.078 kb on - strandat 269.078 kb on - strandat 269.212 kb on + strand, within ABZR87_RS17430at 269.213 kb on - strand, within ABZR87_RS17430at 269.398 kb on + strand, within ABZR87_RS17430at 269.399 kb on - strand, within ABZR87_RS17430at 269.399 kb on - strand, within ABZR87_RS17430at 269.443 kb on + strand, within ABZR87_RS17430at 269.444 kb on - strand, within ABZR87_RS17430at 269.536 kb on + strand, within ABZR87_RS17430at 269.536 kb on + strand, within ABZR87_RS17430at 269.537 kb on - strand, within ABZR87_RS17430at 269.552 kb on + strand, within ABZR87_RS17430at 269.552 kb on + strand, within ABZR87_RS17430at 269.553 kb on - strand, within ABZR87_RS17430at 269.553 kb on - strand, within ABZR87_RS17430at 269.764 kb on + strand, within ABZR87_RS17430at 269.764 kb on + strand, within ABZR87_RS17430at 269.765 kb on - strand, within ABZR87_RS17430at 269.788 kb on + strand, within ABZR87_RS17430at 269.788 kb on + strand, within ABZR87_RS17430at 269.788 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.797 kb on + strand, within ABZR87_RS17430at 269.798 kb on - strand, within ABZR87_RS17430at 269.798 kb on - strand, within ABZR87_RS17430at 269.845 kb on + strand, within ABZR87_RS17430at 269.845 kb on + strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.846 kb on - strand, within ABZR87_RS17430at 269.914 kb on + strand, within ABZR87_RS17430at 269.914 kb on + strand, within ABZR87_RS17430at 269.915 kb on - strand, within ABZR87_RS17430at 269.951 kb on + strandat 270.001 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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267,394 - ABZR87_RS17420 0.50 +1.4
267,394 - ABZR87_RS17420 0.50 -0.6
267,617 + ABZR87_RS17420 0.66 -1.2
267,617 + ABZR87_RS17420 0.66 -0.3
267,618 - ABZR87_RS17420 0.66 +1.4
267,618 - ABZR87_RS17420 0.66 +0.2
267,618 - ABZR87_RS17420 0.66 -0.9
267,677 + ABZR87_RS17420 0.70 -1.0
267,678 - ABZR87_RS17420 0.70 -0.4
268,109 + +0.6
268,110 - -2.2
268,185 + -1.4
268,186 - +0.8
268,278 + ABZR87_RS17425 0.13 -0.5
268,278 + ABZR87_RS17425 0.13 +0.4
268,279 - ABZR87_RS17425 0.13 -1.6
268,464 + ABZR87_RS17425 0.33 +0.8
268,510 - ABZR87_RS17425 0.38 -1.6
268,582 - ABZR87_RS17425 0.46 -1.6
268,641 + ABZR87_RS17425 0.52 -0.8
268,641 + ABZR87_RS17425 0.52 -0.1
268,641 + ABZR87_RS17425 0.52 -0.4
268,641 + ABZR87_RS17425 0.52 +0.5
268,642 - ABZR87_RS17425 0.52 -0.2
268,642 - ABZR87_RS17425 0.52 -2.5
268,642 - ABZR87_RS17425 0.52 +0.4
268,642 - ABZR87_RS17425 0.52 +0.3
268,800 + ABZR87_RS17425 0.69 +0.6
268,801 - ABZR87_RS17425 0.69 -1.1
268,854 + ABZR87_RS17425 0.75 -3.8
268,855 - ABZR87_RS17425 0.75 -0.4
268,855 - ABZR87_RS17425 0.75 +0.7
268,855 - ABZR87_RS17425 0.75 +0.6
268,863 + ABZR87_RS17425 0.76 -1.1
268,864 - ABZR87_RS17425 0.76 -0.0
268,906 - ABZR87_RS17425 0.81 +2.8
268,974 + ABZR87_RS17425 0.88 -1.5
268,975 - ABZR87_RS17425 0.88 +0.1
268,975 - ABZR87_RS17425 0.88 -0.6
269,072 - -1.1
269,078 - -0.4
269,078 - -2.5
269,212 + ABZR87_RS17430 0.11 +1.4
269,213 - ABZR87_RS17430 0.11 -0.6
269,398 + ABZR87_RS17430 0.31 +0.6
269,399 - ABZR87_RS17430 0.31 -1.4
269,399 - ABZR87_RS17430 0.31 -1.1
269,443 + ABZR87_RS17430 0.36 +0.7
269,444 - ABZR87_RS17430 0.36 -0.3
269,536 + ABZR87_RS17430 0.46 -2.2
269,536 + ABZR87_RS17430 0.46 -1.3
269,537 - ABZR87_RS17430 0.47 +0.7
269,552 + ABZR87_RS17430 0.48 -0.1
269,552 + ABZR87_RS17430 0.48 -1.0
269,553 - ABZR87_RS17430 0.48 -0.5
269,553 - ABZR87_RS17430 0.48 +0.7
269,764 + ABZR87_RS17430 0.71 +0.1
269,764 + ABZR87_RS17430 0.71 +0.7
269,765 - ABZR87_RS17430 0.72 +0.1
269,788 + ABZR87_RS17430 0.74 +1.4
269,788 + ABZR87_RS17430 0.74 +0.1
269,788 + ABZR87_RS17430 0.74 +1.8
269,797 + ABZR87_RS17430 0.75 -1.3
269,797 + ABZR87_RS17430 0.75 -0.4
269,797 + ABZR87_RS17430 0.75 -1.4
269,797 + ABZR87_RS17430 0.75 +1.6
269,797 + ABZR87_RS17430 0.75 -0.7
269,798 - ABZR87_RS17430 0.75 -2.0
269,798 - ABZR87_RS17430 0.75 -0.1
269,845 + ABZR87_RS17430 0.80 -0.3
269,845 + ABZR87_RS17430 0.80 +1.1
269,846 - ABZR87_RS17430 0.80 +1.1
269,846 - ABZR87_RS17430 0.80 -1.4
269,846 - ABZR87_RS17430 0.80 +0.5
269,846 - ABZR87_RS17430 0.80 +1.6
269,846 - ABZR87_RS17430 0.80 +1.4
269,914 + ABZR87_RS17430 0.88 -1.5
269,914 + ABZR87_RS17430 0.88 -0.4
269,915 - ABZR87_RS17430 0.88 +1.4
269,951 + +2.2
270,001 + -0.3

Or see this region's nucleotide sequence