Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16890 and ABZR87_RS16895 are separated by 90 nucleotides ABZR87_RS16895 and ABZR87_RS16900 are separated by 287 nucleotides
ABZR87_RS16890: ABZR87_RS16890 - LamG-like jellyroll fold domain-containing protein, at 143,877 to 146,084
_RS16890
ABZR87_RS16895: ABZR87_RS16895 - FUSC family protein, at 146,175 to 147,251
_RS16895
ABZR87_RS16900: ABZR87_RS16900 - EAL domain-containing protein, at 147,539 to 149,710
_RS16900
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.206 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.263 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.341 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.349 kb on + strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.350 kb on - strand, within ABZR87_RS16890 at 145.374 kb on + strand, within ABZR87_RS16890 at 145.375 kb on - strand, within ABZR87_RS16890 at 145.680 kb on + strand, within ABZR87_RS16890 at 145.886 kb on + strand at 145.886 kb on + strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.887 kb on - strand at 145.899 kb on + strand at 145.899 kb on + strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 145.900 kb on - strand at 146.484 kb on - strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.579 kb on + strand, within ABZR87_RS16895 at 146.580 kb on - strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.644 kb on + strand, within ABZR87_RS16895 at 146.696 kb on - strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.704 kb on + strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.705 kb on - strand, within ABZR87_RS16895 at 146.843 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.845 kb on + strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.846 kb on - strand, within ABZR87_RS16895 at 146.869 kb on + strand, within ABZR87_RS16895 at 146.891 kb on + strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.892 kb on - strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.905 kb on + strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 146.906 kb on - strand, within ABZR87_RS16895 at 147.146 kb on - strand at 147.146 kb on - strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.251 kb on + strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.252 kb on - strand at 147.285 kb on + strand at 147.372 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.376 kb on + strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.377 kb on - strand at 147.417 kb on + strand at 147.418 kb on - strand at 147.436 kb on + strand at 147.436 kb on + strand at 147.437 kb on - strand at 147.470 kb on + strand at 147.470 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.478 kb on + strand at 147.479 kb on - strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.538 kb on + strand at 147.539 kb on - strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.608 kb on + strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.609 kb on - strand at 147.904 kb on + strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 147.923 kb on - strand, within ABZR87_RS16900 at 148.206 kb on - strand, within ABZR87_RS16900
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 145,206 + ABZR87_RS16890 0.60 -1.5 145,206 + ABZR87_RS16890 0.60 +0.5 145,263 + ABZR87_RS16890 0.63 -0.5 145,263 + ABZR87_RS16890 0.63 +2.0 145,341 + ABZR87_RS16890 0.66 -0.7 145,341 + ABZR87_RS16890 0.66 +1.7 145,341 + ABZR87_RS16890 0.66 +0.3 145,349 + ABZR87_RS16890 0.67 +0.5 145,349 + ABZR87_RS16890 0.67 +1.4 145,350 - ABZR87_RS16890 0.67 -2.3 145,350 - ABZR87_RS16890 0.67 -1.5 145,350 - ABZR87_RS16890 0.67 +2.2 145,374 + ABZR87_RS16890 0.68 -1.0 145,375 - ABZR87_RS16890 0.68 -0.7 145,680 + ABZR87_RS16890 0.82 -0.9 145,886 + -0.3 145,886 + +0.7 145,887 - -1.1 145,887 - +0.1 145,887 - -0.0 145,899 + -1.9 145,899 + -0.7 145,900 - +0.4 145,900 - -0.7 145,900 - -1.7 145,900 - -0.2 146,484 - ABZR87_RS16895 0.29 +1.9 146,579 + ABZR87_RS16895 0.38 +0.6 146,579 + ABZR87_RS16895 0.38 +0.6 146,580 - ABZR87_RS16895 0.38 +2.2 146,644 + ABZR87_RS16895 0.44 +1.6 146,644 + ABZR87_RS16895 0.44 +0.8 146,696 - ABZR87_RS16895 0.48 -0.3 146,704 + ABZR87_RS16895 0.49 +0.9 146,704 + ABZR87_RS16895 0.49 +2.0 146,704 + ABZR87_RS16895 0.49 +1.7 146,704 + ABZR87_RS16895 0.49 +0.5 146,705 - ABZR87_RS16895 0.49 +3.2 146,705 - ABZR87_RS16895 0.49 -0.5 146,705 - ABZR87_RS16895 0.49 -2.1 146,705 - ABZR87_RS16895 0.49 +1.8 146,843 + ABZR87_RS16895 0.62 +0.1 146,845 + ABZR87_RS16895 0.62 +1.6 146,845 + ABZR87_RS16895 0.62 +0.4 146,845 + ABZR87_RS16895 0.62 -0.2 146,845 + ABZR87_RS16895 0.62 +0.0 146,845 + ABZR87_RS16895 0.62 -0.5 146,846 - ABZR87_RS16895 0.62 +0.8 146,846 - ABZR87_RS16895 0.62 +0.8 146,846 - ABZR87_RS16895 0.62 +1.4 146,869 + ABZR87_RS16895 0.64 +0.5 146,891 + ABZR87_RS16895 0.66 +1.5 146,892 - ABZR87_RS16895 0.67 -1.1 146,892 - ABZR87_RS16895 0.67 +1.1 146,892 - ABZR87_RS16895 0.67 +0.2 146,892 - ABZR87_RS16895 0.67 -0.7 146,905 + ABZR87_RS16895 0.68 +1.4 146,905 + ABZR87_RS16895 0.68 -0.2 146,906 - ABZR87_RS16895 0.68 +0.1 146,906 - ABZR87_RS16895 0.68 +0.8 146,906 - ABZR87_RS16895 0.68 +0.3 147,146 - +0.8 147,146 - -1.8 147,251 + +1.0 147,251 + +1.8 147,251 + +1.0 147,252 - -1.4 147,252 - +0.5 147,252 - -1.4 147,252 - +0.2 147,252 - -1.5 147,285 + +0.4 147,372 + -0.4 147,376 + +2.1 147,376 + +1.4 147,376 + +1.5 147,376 + +1.6 147,377 - -0.9 147,377 - -0.7 147,377 - -0.3 147,377 - +2.6 147,417 + +2.2 147,418 - +0.1 147,436 + -2.1 147,436 + +0.8 147,437 - +0.3 147,470 + -1.4 147,470 + +0.4 147,478 + +0.0 147,478 + +1.1 147,478 + +0.2 147,479 - +0.4 147,538 + +1.6 147,538 + -0.4 147,538 + -0.6 147,538 + -1.5 147,539 - +0.5 147,608 + +0.4 147,608 + -0.3 147,608 + +0.8 147,609 - +2.8 147,609 - +0.9 147,609 - -0.3 147,904 + ABZR87_RS16900 0.17 +0.8 147,923 - ABZR87_RS16900 0.18 -1.6 147,923 - ABZR87_RS16900 0.18 +1.1 148,206 - ABZR87_RS16900 0.31 -1.7
Or see this region's nucleotide sequence