Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14745

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14730 and ABZR87_RS14735 are separated by 13 nucleotidesABZR87_RS14735 and ABZR87_RS14740 are separated by 13 nucleotidesABZR87_RS14740 and ABZR87_RS14745 are separated by 48 nucleotidesABZR87_RS14745 and ABZR87_RS14750 are separated by 79 nucleotides ABZR87_RS14730: ABZR87_RS14730 - urease subunit alpha, at 3,110,667 to 3,112,385 _RS14730 ABZR87_RS14735: ABZR87_RS14735 - urease subunit beta, at 3,112,399 to 3,112,704 _RS14735 ABZR87_RS14740: ABZR87_RS14740 - HupE/UreJ family protein, at 3,112,718 to 3,113,335 _RS14740 ABZR87_RS14745: ABZR87_RS14745 - urease subunit gamma, at 3,113,384 to 3,113,686 _RS14745 ABZR87_RS14750: ABZR87_RS14750 - urease accessory protein UreD, at 3,113,766 to 3,114,653 _RS14750 Position (kb) 3113 3114Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3112.434 kb on - strand, within ABZR87_RS14735at 3112.434 kb on - strand, within ABZR87_RS14735at 3112.434 kb on - strand, within ABZR87_RS14735at 3112.577 kb on + strand, within ABZR87_RS14735at 3112.577 kb on + strand, within ABZR87_RS14735at 3112.577 kb on + strand, within ABZR87_RS14735at 3112.577 kb on + strand, within ABZR87_RS14735at 3112.578 kb on - strand, within ABZR87_RS14735at 3112.578 kb on - strand, within ABZR87_RS14735at 3112.578 kb on - strand, within ABZR87_RS14735at 3112.578 kb on - strand, within ABZR87_RS14735at 3112.578 kb on - strand, within ABZR87_RS14735at 3112.578 kb on - strand, within ABZR87_RS14735at 3112.586 kb on + strand, within ABZR87_RS14735at 3112.621 kb on - strand, within ABZR87_RS14735at 3112.621 kb on - strand, within ABZR87_RS14735at 3112.873 kb on - strand, within ABZR87_RS14740at 3113.284 kb on + strandat 3113.284 kb on + strandat 3113.285 kb on - strandat 3113.285 kb on - strandat 3113.285 kb on - strandat 3113.347 kb on + strandat 3113.511 kb on + strand, within ABZR87_RS14745at 3113.771 kb on + strandat 3113.771 kb on + strandat 3113.772 kb on - strandat 3113.772 kb on - strandat 3113.956 kb on + strand, within ABZR87_RS14750at 3113.956 kb on + strand, within ABZR87_RS14750at 3114.361 kb on + strand, within ABZR87_RS14750at 3114.361 kb on + strand, within ABZR87_RS14750at 3114.362 kb on - strand, within ABZR87_RS14750

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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3,112,434 - ABZR87_RS14735 0.11 +1.5
3,112,434 - ABZR87_RS14735 0.11 -0.6
3,112,434 - ABZR87_RS14735 0.11 -0.1
3,112,577 + ABZR87_RS14735 0.58 -0.7
3,112,577 + ABZR87_RS14735 0.58 +1.1
3,112,577 + ABZR87_RS14735 0.58 -0.5
3,112,577 + ABZR87_RS14735 0.58 +2.0
3,112,578 - ABZR87_RS14735 0.58 +1.8
3,112,578 - ABZR87_RS14735 0.58 -0.6
3,112,578 - ABZR87_RS14735 0.58 -2.7
3,112,578 - ABZR87_RS14735 0.58 +0.4
3,112,578 - ABZR87_RS14735 0.58 +1.0
3,112,578 - ABZR87_RS14735 0.58 +0.3
3,112,586 + ABZR87_RS14735 0.61 -0.4
3,112,621 - ABZR87_RS14735 0.73 +0.1
3,112,621 - ABZR87_RS14735 0.73 -1.6
3,112,873 - ABZR87_RS14740 0.25 -1.2
3,113,284 + -0.7
3,113,284 + -1.0
3,113,285 - -0.7
3,113,285 - -0.4
3,113,285 - +3.9
3,113,347 + +1.6
3,113,511 + ABZR87_RS14745 0.42 -0.5
3,113,771 + -0.4
3,113,771 + -1.4
3,113,772 - -1.1
3,113,772 - -0.1
3,113,956 + ABZR87_RS14750 0.21 -0.1
3,113,956 + ABZR87_RS14750 0.21 +0.9
3,114,361 + ABZR87_RS14750 0.67 -0.3
3,114,361 + ABZR87_RS14750 0.67 -1.1
3,114,362 - ABZR87_RS14750 0.67 +0.4

Or see this region's nucleotide sequence