Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10405

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10400 and ABZR87_RS10405 are separated by 71 nucleotidesABZR87_RS10405 and ABZR87_RS10410 overlap by 8 nucleotidesABZR87_RS10410 and ABZR87_RS10415 are separated by 20 nucleotides ABZR87_RS10400: ABZR87_RS10400 - hypothetical protein, at 2,203,352 to 2,204,443 _RS10400 ABZR87_RS10405: ABZR87_RS10405 - lipoprotein-releasing ABC transporter permease subunit, at 2,204,515 to 2,205,765 _RS10405 ABZR87_RS10410: ABZR87_RS10410 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,205,758 to 2,206,486 _RS10410 ABZR87_RS10415: ABZR87_RS10415 - DUF2845 domain-containing protein, at 2,206,507 to 2,206,812 _RS10415 Position (kb) 2204 2205 2206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2203.618 kb on - strand, within ABZR87_RS10400at 2203.721 kb on + strand, within ABZR87_RS10400at 2203.722 kb on - strand, within ABZR87_RS10400at 2203.863 kb on + strand, within ABZR87_RS10400at 2203.864 kb on - strand, within ABZR87_RS10400at 2204.004 kb on + strand, within ABZR87_RS10400at 2204.005 kb on - strand, within ABZR87_RS10400at 2204.217 kb on + strand, within ABZR87_RS10400at 2204.295 kb on + strand, within ABZR87_RS10400at 2204.296 kb on - strand, within ABZR87_RS10400at 2204.457 kb on + strandat 2204.457 kb on + strandat 2204.457 kb on + strandat 2204.458 kb on - strandat 2204.458 kb on - strandat 2205.757 kb on + strandat 2205.757 kb on + strandat 2206.595 kb on + strand, within ABZR87_RS10415at 2206.595 kb on + strand, within ABZR87_RS10415at 2206.595 kb on + strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.596 kb on - strand, within ABZR87_RS10415at 2206.720 kb on - strand, within ABZR87_RS10415at 2206.720 kb on - strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415at 2206.721 kb on + strand, within ABZR87_RS10415

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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2,203,618 - ABZR87_RS10400 0.24 +1.5
2,203,721 + ABZR87_RS10400 0.34 +2.5
2,203,722 - ABZR87_RS10400 0.34 -1.3
2,203,863 + ABZR87_RS10400 0.47 +0.9
2,203,864 - ABZR87_RS10400 0.47 +1.5
2,204,004 + ABZR87_RS10400 0.60 +3.5
2,204,005 - ABZR87_RS10400 0.60 +2.5
2,204,217 + ABZR87_RS10400 0.79 -1.5
2,204,295 + ABZR87_RS10400 0.86 +0.5
2,204,296 - ABZR87_RS10400 0.86 +2.5
2,204,457 + +0.4
2,204,457 + -2.1
2,204,457 + -0.7
2,204,458 - -0.9
2,204,458 - -0.8
2,205,757 + -1.6
2,205,757 + -2.6
2,206,595 + ABZR87_RS10415 0.29 +0.2
2,206,595 + ABZR87_RS10415 0.29 -0.3
2,206,595 + ABZR87_RS10415 0.29 +0.3
2,206,596 - ABZR87_RS10415 0.29 -3.2
2,206,596 - ABZR87_RS10415 0.29 +3.3
2,206,596 - ABZR87_RS10415 0.29 -0.8
2,206,596 - ABZR87_RS10415 0.29 +0.1
2,206,596 - ABZR87_RS10415 0.29 +0.5
2,206,596 - ABZR87_RS10415 0.29 -0.6
2,206,596 - ABZR87_RS10415 0.29 -1.3
2,206,596 - ABZR87_RS10415 0.29 +1.3
2,206,596 - ABZR87_RS10415 0.29 -0.1
2,206,596 - ABZR87_RS10415 0.29 -1.6
2,206,596 - ABZR87_RS10415 0.29 -0.4
2,206,596 - ABZR87_RS10415 0.29 +0.6
2,206,720 - ABZR87_RS10415 0.70 +0.9
2,206,720 - ABZR87_RS10415 0.70 +0.8
2,206,721 + ABZR87_RS10415 0.70 +0.3
2,206,721 + ABZR87_RS10415 0.70 +3.5
2,206,721 + ABZR87_RS10415 0.70 -1.5

Or see this region's nucleotide sequence