Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08725

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,852,456	+		ABZR87_RS08715	0.64	-1.9
1,852,457	-		ABZR87_RS08715	0.64	-1.5
1,852,457	-		ABZR87_RS08715	0.64	-2.9
1,852,457	-		ABZR87_RS08715	0.64	-0.9
1,852,496	+		ABZR87_RS08715	0.68	-3.5
1,852,496	+		ABZR87_RS08715	0.68	-1.0
1,852,497	-		ABZR87_RS08715	0.68	-3.2
1,852,497	-		ABZR87_RS08715	0.68	-3.1
1,852,520	-		ABZR87_RS08715	0.70	-1.9
1,852,524	+		ABZR87_RS08715	0.71	-2.7
1,852,524	+		ABZR87_RS08715	0.71	+1.5
1,852,524	+		ABZR87_RS08715	0.71	-2.3
1,852,524	+		ABZR87_RS08715	0.71	-0.1
1,852,525	-		ABZR87_RS08715	0.71	+0.1
1,852,525	-		ABZR87_RS08715	0.71	+0.1
1,852,525	-		ABZR87_RS08715	0.71	-2.1
1,852,525	-		ABZR87_RS08715	0.71	-1.2
1,852,528	+		ABZR87_RS08715	0.71	-0.6
1,852,530	+		ABZR87_RS08715	0.71	+0.1
1,852,530	+		ABZR87_RS08715	0.71	-2.4
1,852,530	+		ABZR87_RS08715	0.71	-0.4
1,852,531	-		ABZR87_RS08715	0.71	-0.2
1,852,531	-		ABZR87_RS08715	0.71	+0.3
1,852,531	-		ABZR87_RS08715	0.71	+0.4
1,852,551	-		ABZR87_RS08715	0.74	-2.1
1,852,551	-		ABZR87_RS08715	0.74	-2.1
1,852,577	+		ABZR87_RS08715	0.76	-0.4
1,852,577	+		ABZR87_RS08715	0.76	+0.7
1,852,588	+		ABZR87_RS08715	0.77	-2.3
1,852,588	+		ABZR87_RS08715	0.77	-2.5
1,852,588	+		ABZR87_RS08715	0.77	-0.9
1,852,589	-		ABZR87_RS08715	0.77	-1.3
1,852,666	-		ABZR87_RS08715	0.85	-1.2
1,852,683	+		ABZR87_RS08715	0.87	-0.5
1,852,683	+		ABZR87_RS08715	0.87	-0.8
1,852,683	+		ABZR87_RS08715	0.87	-1.6
1,852,684	-		ABZR87_RS08715	0.87	-0.8
1,852,684	-		ABZR87_RS08715	0.87	+0.1
1,852,697	+		ABZR87_RS08715	0.89	-1.2
1,852,697	+		ABZR87_RS08715	0.89	-0.7
1,852,697	+		ABZR87_RS08715	0.89	-2.1
1,852,698	-		ABZR87_RS08715	0.89	-1.5
1,852,698	-		ABZR87_RS08715	0.89	-0.7
1,852,698	-		ABZR87_RS08715	0.89	-1.7
1,852,707	+		ABZR87_RS08715	0.90	-0.2
1,852,707	+		ABZR87_RS08715	0.90	+0.2
1,852,707	+		ABZR87_RS08715	0.90	-0.0
1,852,707	+		ABZR87_RS08715	0.90	+0.5
1,852,708	-		ABZR87_RS08715	0.90	-0.6
1,852,770	+				-0.1
1,852,799	+				-0.4
1,852,800	-				-1.3
1,852,803	+				-2.2
1,852,804	-				-1.0
1,852,844	+				-3.2
1,852,845	-				-1.7
1,852,846	+				-2.2
1,852,846	+				-0.3
1,852,846	+				-1.5
1,852,846	+				-2.7
1,852,846	+				+0.5
1,852,846	+				+0.1
1,852,846	+				-2.0
1,852,847	-				+0.2
1,852,847	-				+1.0
1,852,847	-				-2.1
1,852,847	-				-1.9
1,852,847	-				-1.0
1,852,847	-				-2.4
1,852,847	-				-2.0
1,852,862	-		ABZR87_RS08720	0.11	-4.4
1,852,886	+		ABZR87_RS08720	0.14	-0.4
1,852,886	+		ABZR87_RS08720	0.14	-2.6
1,852,886	+		ABZR87_RS08720	0.14	-1.6
1,852,891	-		ABZR87_RS08720	0.15	-2.7
1,852,909	+		ABZR87_RS08720	0.18	-0.2
1,852,915	-		ABZR87_RS08720	0.19	-2.1
1,853,025	-		ABZR87_RS08720	0.35	+0.0
1,853,026	+		ABZR87_RS08720	0.36	-1.1
1,853,026	+		ABZR87_RS08720	0.36	-1.2
1,853,027	-		ABZR87_RS08720	0.36	+1.3
1,853,033	+		ABZR87_RS08720	0.37	-1.6
1,853,033	+		ABZR87_RS08720	0.37	+1.1
1,853,033	+		ABZR87_RS08720	0.37	-1.5
1,853,034	-		ABZR87_RS08720	0.37	-0.2
1,853,034	-		ABZR87_RS08720	0.37	-3.2
1,853,034	-		ABZR87_RS08720	0.37	-2.9
1,853,034	-		ABZR87_RS08720	0.37	-4.5
1,853,037	+		ABZR87_RS08720	0.37	+0.0
1,853,038	-		ABZR87_RS08720	0.37	-0.1
1,853,038	-		ABZR87_RS08720	0.37	-0.9
1,853,038	-		ABZR87_RS08720	0.37	-1.2
1,853,038	-		ABZR87_RS08720	0.37	+1.8
1,853,038	-		ABZR87_RS08720	0.37	-1.3
1,853,038	-		ABZR87_RS08720	0.37	+0.3
1,853,038	-		ABZR87_RS08720	0.37	-2.5
1,853,075	+		ABZR87_RS08720	0.43	+0.9
1,853,075	+		ABZR87_RS08720	0.43	+0.3
1,853,075	+		ABZR87_RS08720	0.43	-2.5
1,853,075	+		ABZR87_RS08720	0.43	+0.9
1,853,075	+		ABZR87_RS08720	0.43	+1.1
1,853,076	-		ABZR87_RS08720	0.43	-0.2
1,853,076	-		ABZR87_RS08720	0.43	-0.8
1,853,076	-		ABZR87_RS08720	0.43	-1.9
1,853,076	-		ABZR87_RS08720	0.43	-0.3
1,853,099	-		ABZR87_RS08720	0.47	+4.0
1,853,106	+		ABZR87_RS08720	0.48	-1.8
1,853,107	-		ABZR87_RS08720	0.48	-1.2
1,853,107	-		ABZR87_RS08720	0.48	-1.7
1,853,111	+		ABZR87_RS08720	0.49	-1.1
1,853,112	-		ABZR87_RS08720	0.49	-2.2
1,853,112	-		ABZR87_RS08720	0.49	-0.4
1,853,182	+		ABZR87_RS08720	0.59	-0.3
1,853,249	-		ABZR87_RS08720	0.70	-1.7
1,853,251	-		ABZR87_RS08720	0.70	-2.0
1,853,263	+		ABZR87_RS08720	0.72	-0.8
1,853,264	-		ABZR87_RS08720	0.72	-2.9
1,853,264	-		ABZR87_RS08720	0.72	-2.6
1,853,280	+		ABZR87_RS08720	0.74	-3.1
1,853,280	+		ABZR87_RS08720	0.74	+1.9
1,853,310	+		ABZR87_RS08720	0.79	-0.1
1,853,311	-		ABZR87_RS08720	0.79	-0.1
1,853,311	-		ABZR87_RS08720	0.79	-0.9
1,853,336	+		ABZR87_RS08720	0.83	-3.5
1,853,355	+		ABZR87_RS08720	0.86	-3.6
1,853,356	-		ABZR87_RS08720	0.86	-1.3
1,853,415	+				-1.3
1,853,416	-				-2.4
1,853,416	-				-0.2
1,853,416	-				+2.0
1,853,421	-				-4.6
1,853,421	-				-1.1
1,853,421	-				-0.4
1,853,441	+				-1.3
1,853,441	+				+0.0
1,853,441	+				+0.5
1,853,441	+				+1.5
1,853,442	-				-1.4
1,853,442	-				-0.8
1,853,442	-				-2.5
1,853,442	-				+1.4
1,853,442	-				+0.9
1,853,477	+				-3.1
1,853,477	+				-0.3
1,853,478	-				-0.7
1,853,532	+				-2.4
1,853,532	+				-1.4
1,853,532	+				-0.5
1,853,532	+				-3.5
1,853,532	+				-1.9
1,853,533	-				-1.4
1,853,533	-				-1.8
1,853,595	+		ABZR87_RS08725	0.13	-0.9
1,853,595	+		ABZR87_RS08725	0.13	-2.4
1,853,605	+		ABZR87_RS08725	0.14	-4.3
1,853,605	+		ABZR87_RS08725	0.14	-1.7
1,853,606	-		ABZR87_RS08725	0.14	-1.2
1,853,606	-		ABZR87_RS08725	0.14	+0.7
1,853,606	-		ABZR87_RS08725	0.14	-1.6
1,853,606	-		ABZR87_RS08725	0.14	-0.2
1,853,623	+		ABZR87_RS08725	0.15	-3.8
1,853,623	+		ABZR87_RS08725	0.15	-1.3
1,853,623	+		ABZR87_RS08725	0.15	-3.4
1,853,623	+		ABZR87_RS08725	0.15	+3.5
1,853,623	+		ABZR87_RS08725	0.15	-1.2
1,853,623	+		ABZR87_RS08725	0.15	-2.0
1,853,623	+		ABZR87_RS08725	0.15	-1.1
1,853,623	+		ABZR87_RS08725	0.15	+2.5
1,853,623	+		ABZR87_RS08725	0.15	-1.3
1,853,623	+		ABZR87_RS08725	0.15	+3.3
1,853,624	-		ABZR87_RS08725	0.15	-1.6
1,853,624	-		ABZR87_RS08725	0.15	-3.2
1,853,624	-		ABZR87_RS08725	0.15	-2.6
1,853,624	-		ABZR87_RS08725	0.15	-3.0
1,853,624	-		ABZR87_RS08725	0.15	-2.2
1,853,624	-		ABZR87_RS08725	0.15	-1.0
1,853,705	+		ABZR87_RS08725	0.22	+0.5
1,853,705	+		ABZR87_RS08725	0.22	-0.8
1,853,706	-		ABZR87_RS08725	0.22	-1.6
1,853,706	-		ABZR87_RS08725	0.22	-1.5
1,853,706	-		ABZR87_RS08725	0.22	-1.8
1,853,716	+		ABZR87_RS08725	0.23	-1.3
1,853,716	+		ABZR87_RS08725	0.23	-1.8
1,853,717	-		ABZR87_RS08725	0.23	-2.8
1,853,801	+		ABZR87_RS08725	0.31	-2.7
1,853,802	-		ABZR87_RS08725	0.31	-1.0
1,853,945	+		ABZR87_RS08725	0.43	-2.6
1,853,946	-		ABZR87_RS08725	0.43	-1.9
1,853,946	-		ABZR87_RS08725	0.43	-1.1
1,853,946	-		ABZR87_RS08725	0.43	-2.4
1,853,946	-		ABZR87_RS08725	0.43	-0.3
1,853,946	-		ABZR87_RS08725	0.43	+5.6
1,853,946	-		ABZR87_RS08725	0.43	-0.1
1,853,946	-		ABZR87_RS08725	0.43	-3.0
1,853,993	+		ABZR87_RS08725	0.47	-2.8
1,853,993	+		ABZR87_RS08725	0.47	-2.9
1,853,993	+		ABZR87_RS08725	0.47	-0.3
1,853,993	+		ABZR87_RS08725	0.47	-0.7
1,853,994	-		ABZR87_RS08725	0.47	-1.9
1,853,994	-		ABZR87_RS08725	0.47	-0.9
1,853,994	-		ABZR87_RS08725	0.47	-2.2
1,853,994	-		ABZR87_RS08725	0.47	+0.5
1,854,060	-		ABZR87_RS08725	0.53	-1.5
1,854,060	-		ABZR87_RS08725	0.53	-0.9
1,854,060	-		ABZR87_RS08725	0.53	+5.3
1,854,060	-		ABZR87_RS08725	0.53	-2.9
1,854,060	-		ABZR87_RS08725	0.53	-2.2
1,854,060	-		ABZR87_RS08725	0.53	-0.9
1,854,060	-		ABZR87_RS08725	0.53	-2.5
1,854,090	+		ABZR87_RS08725	0.55	-3.0
1,854,090	+		ABZR87_RS08725	0.55	-1.2
1,854,090	+		ABZR87_RS08725	0.55	-1.5
1,854,090	+		ABZR87_RS08725	0.55	-1.4
1,854,090	+		ABZR87_RS08725	0.55	-1.1
1,854,091	-		ABZR87_RS08725	0.55	-1.0
1,854,091	-		ABZR87_RS08725	0.55	+0.2
1,854,091	-		ABZR87_RS08725	0.55	-2.3
1,854,091	-		ABZR87_RS08725	0.55	+0.3
1,854,091	-		ABZR87_RS08725	0.55	-1.9
1,854,091	-		ABZR87_RS08725	0.55	-1.1
1,854,091	-		ABZR87_RS08725	0.55	-0.7
1,854,091	-		ABZR87_RS08725	0.55	-1.1
1,854,091	-		ABZR87_RS08725	0.55	-1.9
1,854,091	-		ABZR87_RS08725	0.55	-1.6
1,854,091	-		ABZR87_RS08725	0.55	-0.7
1,854,102	+		ABZR87_RS08725	0.56	-2.6
1,854,102	+		ABZR87_RS08725	0.56	-1.4
1,854,102	+		ABZR87_RS08725	0.56	-1.1
1,854,102	+		ABZR87_RS08725	0.56	-2.2
1,854,102	+		ABZR87_RS08725	0.56	-3.3
1,854,103	-		ABZR87_RS08725	0.56	-3.0
1,854,283	+		ABZR87_RS08725	0.72	-0.1
1,854,283	+		ABZR87_RS08725	0.72	-1.9
1,854,283	+		ABZR87_RS08725	0.72	-2.9
1,854,283	+		ABZR87_RS08725	0.72	-2.1
1,854,284	-		ABZR87_RS08725	0.72	-1.4
1,854,289	+		ABZR87_RS08725	0.72	-2.9
1,854,308	+		ABZR87_RS08725	0.74	-1.7
1,854,308	+		ABZR87_RS08725	0.74	-2.9
1,854,308	+		ABZR87_RS08725	0.74	-0.4
1,854,309	-		ABZR87_RS08725	0.74	-2.2
1,854,309	-		ABZR87_RS08725	0.74	+0.2
1,854,309	-		ABZR87_RS08725	0.74	-2.7
1,854,324	+		ABZR87_RS08725	0.75	-1.9
1,854,324	+		ABZR87_RS08725	0.75	-3.3
1,854,324	+		ABZR87_RS08725	0.75	-0.2
1,854,325	-		ABZR87_RS08725	0.75	+1.6
1,854,325	-		ABZR87_RS08725	0.75	+3.5
1,854,325	-		ABZR87_RS08725	0.75	-3.2
1,854,325	-		ABZR87_RS08725	0.75	-1.2
1,854,325	-		ABZR87_RS08725	0.75	-0.6
1,854,333	+		ABZR87_RS08725	0.76	-2.5
1,854,334	-		ABZR87_RS08725	0.76	-1.3
1,854,334	-		ABZR87_RS08725	0.76	-1.3
1,854,334	-		ABZR87_RS08725	0.76	-3.6
1,854,339	+		ABZR87_RS08725	0.76	-3.7
1,854,339	+		ABZR87_RS08725	0.76	-1.1
1,854,339	+		ABZR87_RS08725	0.76	+0.4
1,854,340	-		ABZR87_RS08725	0.76	-0.1
1,854,340	-		ABZR87_RS08725	0.76	-1.2
1,854,340	-		ABZR87_RS08725	0.76	-1.5
1,854,358	+		ABZR87_RS08725	0.78	-2.7
1,854,358	+		ABZR87_RS08725	0.78	-0.3
1,854,358	+		ABZR87_RS08725	0.78	-1.8
1,854,359	-		ABZR87_RS08725	0.78	-2.8
1,854,359	-		ABZR87_RS08725	0.78	-0.9
1,854,420	+		ABZR87_RS08725	0.83	-2.2
1,854,420	+		ABZR87_RS08725	0.83	-1.7
1,854,420	+		ABZR87_RS08725	0.83	-3.0
1,854,420	+		ABZR87_RS08725	0.83	-0.8
1,854,420	+		ABZR87_RS08725	0.83	-2.0
1,854,420	+		ABZR87_RS08725	0.83	-0.5
1,854,421	-		ABZR87_RS08725	0.83	-1.7
1,854,421	-		ABZR87_RS08725	0.83	-1.6
1,854,421	-		ABZR87_RS08725	0.83	-0.6
1,854,421	-		ABZR87_RS08725	0.83	-1.4
1,854,444	+		ABZR87_RS08725	0.85	+0.7
1,854,444	+		ABZR87_RS08725	0.85	-2.4
1,854,444	+		ABZR87_RS08725	0.85	-0.8
1,854,444	+		ABZR87_RS08725	0.85	-0.7
1,854,444	+		ABZR87_RS08725	0.85	-0.9
1,854,444	+		ABZR87_RS08725	0.85	-3.2
1,854,444	+		ABZR87_RS08725	0.85	-2.0
1,854,444	+		ABZR87_RS08725	0.85	-3.2
1,854,445	-		ABZR87_RS08725	0.85	-3.3
1,854,445	-		ABZR87_RS08725	0.85	-2.0
1,854,445	-		ABZR87_RS08725	0.85	+0.4
1,854,445	-		ABZR87_RS08725	0.85	-0.8
1,854,493	+		ABZR87_RS08725	0.89	+0.7
1,854,569	+				-1.9
1,854,569	+				-0.5
1,854,569	+				-1.2
1,854,569	+				-0.1
1,854,569	+				-2.3
1,854,569	+				-1.4
1,854,570	-				-0.8
1,854,570	-				+0.1
1,854,570	-				-3.3
1,854,570	-				-1.1
1,854,570	-				+1.9
1,854,595	+				+2.4
1,854,595	+				+1.3
1,854,596	-				-0.3
1,854,596	-				-1.1
1,854,596	-				-2.0
1,854,596	-				-4.0
1,854,596	-				-1.6
1,854,596	-				+0.1
1,854,625	+				+2.8
1,854,625	+				-0.2
1,854,625	+				+0.0
1,854,625	+				+1.9
1,854,625	+				-0.7
1,854,625	+				-1.3
1,854,625	+				-1.2
1,854,626	-				-2.5
1,854,626	-				-1.3
1,854,626	-				+0.8
1,854,626	-				-1.1
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