Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08275

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS08270 and ABZR87_RS08275 are separated by 237 nucleotidesABZR87_RS08275 and ABZR87_RS08280 are separated by 18 nucleotidesABZR87_RS08280 and ABZR87_RS08285 are separated by 22 nucleotides ABZR87_RS08270: ABZR87_RS08270 - paraquat-inducible protein A, at 1,756,546 to 1,757,325 _RS08270 ABZR87_RS08275: ABZR87_RS08275 - hypothetical protein, at 1,757,563 to 1,758,087 _RS08275 ABZR87_RS08280: ABZR87_RS08280 - S-formylglutathione hydrolase, at 1,758,106 to 1,758,969 _RS08280 ABZR87_RS08285: ABZR87_RS08285 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 1,758,992 to 1,760,098 _RS08285 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1756.582 kb on + strandat 1756.582 kb on + strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.952 kb on + strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1757.048 kb on + strand, within ABZR87_RS08270at 1757.049 kb on - strand, within ABZR87_RS08270at 1757.112 kb on - strand, within ABZR87_RS08270at 1757.397 kb on - strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.402 kb on + strandat 1757.403 kb on - strandat 1757.403 kb on - strandat 1757.403 kb on - strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.417 kb on - strandat 1757.417 kb on - strandat 1757.417 kb on - strandat 1757.418 kb on + strandat 1757.418 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.465 kb on - strandat 1757.465 kb on - strandat 1757.465 kb on - strandat 1757.569 kb on + strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.629 kb on + strand, within ABZR87_RS08275at 1757.629 kb on + strand, within ABZR87_RS08275at 1757.629 kb on + strand, within ABZR87_RS08275at 1757.630 kb on - strand, within ABZR87_RS08275at 1757.698 kb on - strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.851 kb on + strand, within ABZR87_RS08275at 1757.962 kb on - strand, within ABZR87_RS08275at 1757.973 kb on + strand, within ABZR87_RS08275at 1758.107 kb on + strandat 1758.108 kb on - strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.165 kb on - strandat 1758.165 kb on - strandat 1758.167 kb on + strandat 1758.168 kb on - strandat 1758.168 kb on - strandat 1758.179 kb on + strandat 1758.248 kb on + strand, within ABZR87_RS08280at 1758.248 kb on + strand, within ABZR87_RS08280at 1758.249 kb on - strand, within ABZR87_RS08280at 1758.249 kb on - strand, within ABZR87_RS08280at 1758.380 kb on + strand, within ABZR87_RS08280at 1758.413 kb on - strand, within ABZR87_RS08280at 1758.413 kb on - strand, within ABZR87_RS08280at 1758.584 kb on + strand, within ABZR87_RS08280at 1758.584 kb on + strand, within ABZR87_RS08280at 1758.584 kb on + strand, within ABZR87_RS08280at 1758.585 kb on - strand, within ABZR87_RS08280at 1758.585 kb on - strand, within ABZR87_RS08280at 1758.599 kb on + strand, within ABZR87_RS08280at 1758.600 kb on - strand, within ABZR87_RS08280at 1758.723 kb on + strand, within ABZR87_RS08280at 1758.723 kb on + strand, within ABZR87_RS08280at 1758.724 kb on - strand, within ABZR87_RS08280at 1758.784 kb on - strand, within ABZR87_RS08280at 1758.803 kb on + strand, within ABZR87_RS08280at 1758.804 kb on - strand, within ABZR87_RS08280at 1758.804 kb on - strand, within ABZR87_RS08280at 1758.804 kb on - strand, within ABZR87_RS08280at 1758.804 kb on - strand, within ABZR87_RS08280at 1758.851 kb on + strand, within ABZR87_RS08280at 1758.900 kb on - strandat 1758.996 kb on + strandat 1758.997 kb on - strandat 1758.997 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,756,582 + -3.3
1,756,582 + -0.3
1,756,583 - -0.4
1,756,583 - -1.4
1,756,583 - -1.5
1,756,583 - -0.9
1,756,892 + ABZR87_RS08270 0.44 -2.2
1,756,892 + ABZR87_RS08270 0.44 +0.0
1,756,892 + ABZR87_RS08270 0.44 -0.1
1,756,892 + ABZR87_RS08270 0.44 -2.1
1,756,892 + ABZR87_RS08270 0.44 -0.6
1,756,892 + ABZR87_RS08270 0.44 -0.2
1,756,892 + ABZR87_RS08270 0.44 +0.2
1,756,893 - ABZR87_RS08270 0.44 +0.5
1,756,893 - ABZR87_RS08270 0.44 -0.9
1,756,893 - ABZR87_RS08270 0.44 -0.8
1,756,893 - ABZR87_RS08270 0.44 -0.8
1,756,893 - ABZR87_RS08270 0.44 -0.3
1,756,893 - ABZR87_RS08270 0.44 +0.4
1,756,893 - ABZR87_RS08270 0.44 -0.1
1,756,893 - ABZR87_RS08270 0.44 +0.6
1,756,952 + ABZR87_RS08270 0.52 +1.4
1,756,953 - ABZR87_RS08270 0.52 -2.6
1,756,953 - ABZR87_RS08270 0.52 -1.2
1,756,953 - ABZR87_RS08270 0.52 +1.5
1,756,958 + ABZR87_RS08270 0.53 -0.4
1,756,958 + ABZR87_RS08270 0.53 +0.1
1,756,958 + ABZR87_RS08270 0.53 +0.9
1,756,959 - ABZR87_RS08270 0.53 -1.1
1,756,959 - ABZR87_RS08270 0.53 -0.5
1,756,959 - ABZR87_RS08270 0.53 +2.5
1,756,959 - ABZR87_RS08270 0.53 +1.7
1,757,048 + ABZR87_RS08270 0.64 +4.0
1,757,049 - ABZR87_RS08270 0.64 -0.2
1,757,112 - ABZR87_RS08270 0.73 -0.1
1,757,397 - +0.3
1,757,398 + -0.9
1,757,398 + -0.3
1,757,398 + +0.7
1,757,398 + +1.0
1,757,398 + +1.2
1,757,399 - +0.2
1,757,399 - -1.5
1,757,399 - +0.5
1,757,399 - +0.9
1,757,402 + -0.7
1,757,403 - +3.0
1,757,403 - +1.1
1,757,403 - +0.9
1,757,416 + -3.1
1,757,416 + -0.8
1,757,416 + -1.9
1,757,416 + +2.3
1,757,417 - -0.8
1,757,417 - +1.0
1,757,417 - -0.6
1,757,418 + +1.2
1,757,418 + +0.5
1,757,464 + -0.3
1,757,464 + -0.2
1,757,464 + -0.2
1,757,464 + +1.4
1,757,465 - +1.2
1,757,465 - -0.1
1,757,465 - -2.0
1,757,569 + +0.1
1,757,570 - +2.3
1,757,570 - +1.1
1,757,570 - -0.2
1,757,570 - -1.5
1,757,570 - +0.0
1,757,629 + ABZR87_RS08275 0.13 +1.5
1,757,629 + ABZR87_RS08275 0.13 +2.0
1,757,629 + ABZR87_RS08275 0.13 +0.7
1,757,630 - ABZR87_RS08275 0.13 +3.4
1,757,698 - ABZR87_RS08275 0.26 +0.0
1,757,781 + ABZR87_RS08275 0.42 +1.8
1,757,781 + ABZR87_RS08275 0.42 -0.3
1,757,781 + ABZR87_RS08275 0.42 -1.0
1,757,781 + ABZR87_RS08275 0.42 +0.1
1,757,821 - ABZR87_RS08275 0.49 -0.3
1,757,821 - ABZR87_RS08275 0.49 -3.1
1,757,821 - ABZR87_RS08275 0.49 +0.6
1,757,821 - ABZR87_RS08275 0.49 -0.3
1,757,851 + ABZR87_RS08275 0.55 +0.9
1,757,962 - ABZR87_RS08275 0.76 -1.8
1,757,973 + ABZR87_RS08275 0.78 +2.1
1,758,107 + -0.8
1,758,108 - +0.8
1,758,164 + -0.8
1,758,164 + -2.0
1,758,164 + -0.5
1,758,164 + +0.9
1,758,164 + +3.5
1,758,164 + +2.1
1,758,165 - -2.1
1,758,165 - -0.9
1,758,167 + -0.5
1,758,168 - -1.0
1,758,168 - -0.8
1,758,179 + +0.0
1,758,248 + ABZR87_RS08280 0.16 -3.6
1,758,248 + ABZR87_RS08280 0.16 -0.6
1,758,249 - ABZR87_RS08280 0.17 +0.5
1,758,249 - ABZR87_RS08280 0.17 -0.4
1,758,380 + ABZR87_RS08280 0.32 -0.9
1,758,413 - ABZR87_RS08280 0.36 -1.0
1,758,413 - ABZR87_RS08280 0.36 +1.5
1,758,584 + ABZR87_RS08280 0.55 -3.4
1,758,584 + ABZR87_RS08280 0.55 +0.0
1,758,584 + ABZR87_RS08280 0.55 +0.2
1,758,585 - ABZR87_RS08280 0.55 -2.3
1,758,585 - ABZR87_RS08280 0.55 +0.1
1,758,599 + ABZR87_RS08280 0.57 -1.7
1,758,600 - ABZR87_RS08280 0.57 -0.5
1,758,723 + ABZR87_RS08280 0.71 +0.6
1,758,723 + ABZR87_RS08280 0.71 +2.0
1,758,724 - ABZR87_RS08280 0.72 +0.9
1,758,784 - ABZR87_RS08280 0.78 -0.4
1,758,803 + ABZR87_RS08280 0.81 -0.4
1,758,804 - ABZR87_RS08280 0.81 -2.3
1,758,804 - ABZR87_RS08280 0.81 +0.7
1,758,804 - ABZR87_RS08280 0.81 +0.5
1,758,804 - ABZR87_RS08280 0.81 -0.3
1,758,851 + ABZR87_RS08280 0.86 +0.6
1,758,900 - -1.2
1,758,996 + +0.5
1,758,997 - -1.3
1,758,997 - -0.3

Or see this region's nucleotide sequence