Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06990

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06980 and ABZR87_RS06985 are separated by 170 nucleotidesABZR87_RS06985 and ABZR87_RS06990 are separated by 152 nucleotidesABZR87_RS06990 and ABZR87_RS06995 are separated by 78 nucleotidesABZR87_RS06995 and ABZR87_RS07000 are separated by 50 nucleotides ABZR87_RS06980: ABZR87_RS06980 - aminoacyl-tRNA hydrolase, at 1,475,127 to 1,475,729 _RS06980 ABZR87_RS06985: ABZR87_RS06985 - 50S ribosomal protein L25/general stress protein Ctc, at 1,475,900 to 1,476,526 _RS06985 ABZR87_RS06990: ABZR87_RS06990 - ribose-phosphate pyrophosphokinase, at 1,476,679 to 1,477,629 _RS06990 ABZR87_RS06995: ABZR87_RS06995 - tRNA-Gln, at 1,477,708 to 1,477,784 _RS06995 ABZR87_RS07000: ABZR87_RS07000 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,477,835 to 1,478,704 _RS07000 Position (kb) 1476 1477 1478Strain fitness (log2 ratio) -2 -1 0 1 2at 1475.738 kb on + strandat 1475.738 kb on + strandat 1475.773 kb on + strandat 1475.774 kb on - strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.781 kb on + strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.782 kb on - strandat 1475.901 kb on + strandat 1475.902 kb on - strandat 1476.586 kb on - strandat 1476.660 kb on - strandat 1476.660 kb on - strandat 1476.680 kb on + strandat 1476.681 kb on - strandat 1476.681 kb on - strandat 1477.697 kb on - strandat 1477.697 kb on - strandat 1477.697 kb on - strandat 1477.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,475,738 + +0.1
1,475,738 + +0.1
1,475,773 + +0.1
1,475,774 - -0.9
1,475,781 + +0.5
1,475,781 + +2.0
1,475,781 + -0.9
1,475,781 + -0.4
1,475,781 + -2.5
1,475,781 + -1.0
1,475,781 + -1.3
1,475,781 + -0.9
1,475,782 - -0.2
1,475,782 - +0.8
1,475,782 - -0.2
1,475,782 - +1.3
1,475,782 - +1.8
1,475,901 + -0.7
1,475,902 - +0.0
1,476,586 - +1.0
1,476,660 - -0.7
1,476,660 - -2.3
1,476,680 + +0.1
1,476,681 - -1.0
1,476,681 - -2.3
1,477,697 - +2.6
1,477,697 - +2.6
1,477,697 - +1.3
1,477,697 - -0.8

Or see this region's nucleotide sequence