Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05225

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,097,314	+		ABZR87_RS05220	0.69	-0.1
1,097,314	+		ABZR87_RS05220	0.69	+0.9
1,097,314	+		ABZR87_RS05220	0.69	-0.4
1,097,314	+		ABZR87_RS05220	0.69	+0.5
1,097,315	-		ABZR87_RS05220	0.69	-1.0
1,097,315	-		ABZR87_RS05220	0.69	-1.0
1,097,315	-		ABZR87_RS05220	0.69	-2.7
1,097,315	-		ABZR87_RS05220	0.69	+0.0
1,097,315	-		ABZR87_RS05220	0.69	+2.0
1,097,315	-		ABZR87_RS05220	0.69	-0.4
1,097,323	+		ABZR87_RS05220	0.70	+0.7
1,097,323	+		ABZR87_RS05220	0.70	+0.5
1,097,324	-		ABZR87_RS05220	0.70	+0.3
1,097,611	+		ABZR87_RS05220	0.84	-0.1
1,097,611	+		ABZR87_RS05220	0.84	-0.7
1,097,611	+		ABZR87_RS05220	0.84	-0.4
1,097,612	-		ABZR87_RS05220	0.84	-0.1
1,097,612	-		ABZR87_RS05220	0.84	-0.5
1,097,710	+		ABZR87_RS05220	0.88	+1.5
1,097,710	+		ABZR87_RS05220	0.88	+0.0
1,097,711	-		ABZR87_RS05220	0.88	+0.9
1,097,728	+		ABZR87_RS05220	0.89	-1.3
1,097,728	+		ABZR87_RS05220	0.89	+0.4
1,097,794	+				-0.1
1,097,794	+				-0.1
1,097,795	-				-1.5
1,097,795	-				-0.4
1,097,795	-				+0.2
1,097,795	-				+0.9
1,097,795	-				+1.9
1,097,797	+				-0.1
1,097,797	+				+0.6
1,097,797	+				+0.4
1,097,797	+				+1.9
1,097,797	+				-1.4
1,097,803	+				-0.6
1,097,804	-				-3.1
1,097,815	+				+0.6
1,097,815	+				+4.3
1,097,815	+				+1.7
1,097,815	+				-0.2
1,097,815	+				-0.1
1,097,816	-				-1.3
1,097,816	-				+0.2
1,097,816	-				-2.5
1,097,823	+				+0.7
1,097,823	+				-0.0
1,097,824	-				-0.2
1,097,824	-				-0.3
1,097,836	-				+1.2
1,098,041	+				-0.6
1,098,041	+				+0.4
1,098,041	+				-0.0
1,098,041	+				-0.7
1,098,042	-				+0.2
1,098,042	-				+0.3
1,098,042	-				-0.6
1,098,044	+				-1.0
1,098,044	+				+0.8
1,098,044	+				+1.3
1,098,044	+				-0.2
1,098,044	+				-0.5
1,098,044	+				-0.7
1,098,044	+				+1.1
1,098,044	+				+0.1
1,098,044	+				-1.6
1,098,044	+				-1.7
1,098,045	-				+0.2
1,098,045	-				-0.7
1,098,045	-				-1.7
1,098,045	-				-1.5
1,098,045	-				-0.4
1,098,081	+				+1.6
1,098,082	-				+0.1
1,098,082	-				+0.9
1,098,098	+				-0.5
1,098,098	+				-0.1
1,098,098	+				+1.9
1,098,098	+				+0.3
1,098,098	+				-0.1
1,098,099	-				+0.6
1,098,099	-				+0.4
1,098,104	+				-0.5
1,098,104	+				-2.4
1,098,105	-				-0.6
1,098,105	-				-2.5
1,098,174	+				+1.5
1,098,174	+				-1.6
1,098,175	-				+1.7
1,098,175	-				+0.3
1,098,340	+		ABZR87_RS05225	0.11	+0.8
1,098,340	+		ABZR87_RS05225	0.11	+1.5
1,098,340	+		ABZR87_RS05225	0.11	+0.1
1,098,340	+		ABZR87_RS05225	0.11	+0.0
1,098,340	+		ABZR87_RS05225	0.11	-2.2
1,098,340	+		ABZR87_RS05225	0.11	-0.3
1,098,341	-		ABZR87_RS05225	0.12	+1.2
1,098,473	-		ABZR87_RS05225	0.21	+0.4
1,098,484	+		ABZR87_RS05225	0.21	+0.0
1,098,484	+		ABZR87_RS05225	0.21	-0.2
1,098,485	-		ABZR87_RS05225	0.22	-0.7
1,098,628	+		ABZR87_RS05225	0.31	+2.6
1,098,629	-		ABZR87_RS05225	0.32	-0.1
1,098,677	-		ABZR87_RS05225	0.35	+0.5
1,098,724	+		ABZR87_RS05225	0.38	+3.1
1,098,725	-		ABZR87_RS05225	0.38	-1.1
1,099,384	-		ABZR87_RS05225	0.84	-1.5
1,099,385	+		ABZR87_RS05225	0.84	-0.8
1,099,385	+		ABZR87_RS05225	0.84	-0.1
1,099,515	+				-0.3
1,099,515	+				+0.6
1,099,515	+				+1.3
1,099,515	+				-1.6
1,099,515	+				+0.3
1,099,515	+				+0.9
1,099,516	-				+0.9
1,099,516	-				-1.6
1,099,516	-				+1.3
1,099,516	-				+0.4
1,099,516	-				-1.6
1,099,610	+				-0.3
1,099,610	+				+0.0
1,099,611	-				+1.7
1,099,611	-				+0.3
1,099,896	+		ABZR87_RS05230	0.44	+0.4
1,099,896	+		ABZR87_RS05230	0.44	+0.5
1,099,896	+		ABZR87_RS05230	0.44	+0.3
1,099,897	-		ABZR87_RS05230	0.44	+1.1
1,099,897	-		ABZR87_RS05230	0.44	+0.5
1,099,900	+		ABZR87_RS05230	0.45	-1.1
1,099,900	+		ABZR87_RS05230	0.45	+1.5
1,099,900	+		ABZR87_RS05230	0.45	+1.1
1,099,900	+		ABZR87_RS05230	0.45	-0.2
1,099,900	+		ABZR87_RS05230	0.45	+1.7
1,099,901	-		ABZR87_RS05230	0.45	-1.7
1,099,901	-		ABZR87_RS05230	0.45	+2.1
1,099,932	+		ABZR87_RS05230	0.50	+0.1
1,099,932	+		ABZR87_RS05230	0.50	-0.2
1,099,933	-		ABZR87_RS05230	0.50	-0.5
1,099,933	-		ABZR87_RS05230	0.50	-0.8
1,100,004	+		ABZR87_RS05230	0.61	+3.4
1,100,004	+		ABZR87_RS05230	0.61	-1.7
1,100,004	+		ABZR87_RS05230	0.61	-3.0
1,100,004	+		ABZR87_RS05230	0.61	+2.4
1,100,005	-		ABZR87_RS05230	0.61	+1.1
1,100,005	-		ABZR87_RS05230	0.61	-1.1
1,100,005	-		ABZR87_RS05230	0.61	+0.7
1,100,005	-		ABZR87_RS05230	0.61	-0.6
1,100,005	-		ABZR87_RS05230	0.61	-2.4
1,100,113	-		ABZR87_RS05230	0.78	+0.6
1,100,254	-				+0.3
1,100,254	-				+3.5
1,100,277	+				+1.7
1,100,277	+				-1.3
1,100,278	-				+3.6
1,100,278	-				-0.2
1,100,278	-				+1.5
1,100,459	+		ABZR87_RS05235	0.21	-1.5
1,100,459	+		ABZR87_RS05235	0.21	-1.4
1,100,460	-		ABZR87_RS05235	0.21	-0.0
1,100,460	-		ABZR87_RS05235	0.21	+0.1
1,100,470	+		ABZR87_RS05235	0.22	-0.1
1,100,471	-		ABZR87_RS05235	0.22	-0.3
1,100,526	+		ABZR87_RS05235	0.28	-1.7
1,100,526	+		ABZR87_RS05235	0.28	+0.4
1,100,526	+		ABZR87_RS05235	0.28	+3.2
1,100,526	+		ABZR87_RS05235	0.28	-0.5
1,100,526	+		ABZR87_RS05235	0.28	-0.3
1,100,527	-		ABZR87_RS05235	0.28	-0.5
1,100,527	-		ABZR87_RS05235	0.28	-0.5
1,100,527	-		ABZR87_RS05235	0.28	-0.3