Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05205

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,093,153	+		ABZR87_RS05200	0.19	-3.6
1,093,153	+		ABZR87_RS05200	0.19	+1.2
1,093,153	+		ABZR87_RS05200	0.19	-2.3
1,093,153	+		ABZR87_RS05200	0.19	-1.5
1,093,153	+		ABZR87_RS05200	0.19	-2.8
1,093,153	+		ABZR87_RS05200	0.19	-1.9
1,093,153	+		ABZR87_RS05200	0.19	-1.5
1,093,153	+		ABZR87_RS05200	0.19	+0.3
1,093,153	+		ABZR87_RS05200	0.19	-2.8
1,093,154	-		ABZR87_RS05200	0.19	-0.1
1,093,154	-		ABZR87_RS05200	0.19	-2.5
1,093,154	-		ABZR87_RS05200	0.19	-0.5
1,093,154	-		ABZR87_RS05200	0.19	+0.3
1,093,154	-		ABZR87_RS05200	0.19	-2.3
1,093,154	-		ABZR87_RS05200	0.19	-2.6
1,093,154	-		ABZR87_RS05200	0.19	-2.9
1,093,154	-		ABZR87_RS05200	0.19	-1.5
1,093,349	+		ABZR87_RS05200	0.35	-2.5
1,093,349	+		ABZR87_RS05200	0.35	-3.6
1,093,349	+		ABZR87_RS05200	0.35	-0.2
1,093,349	+		ABZR87_RS05200	0.35	-3.8
1,093,493	+		ABZR87_RS05200	0.47	-1.2
1,093,493	+		ABZR87_RS05200	0.47	-2.0
1,093,494	-		ABZR87_RS05200	0.47	-1.5
1,093,532	-		ABZR87_RS05200	0.50	-3.9
1,093,532	-		ABZR87_RS05200	0.50	-2.0
1,093,532	-		ABZR87_RS05200	0.50	-0.7
1,093,619	+		ABZR87_RS05200	0.58	-4.3
1,093,619	+		ABZR87_RS05200	0.58	-2.9
1,093,619	+		ABZR87_RS05200	0.58	-2.1
1,093,619	+		ABZR87_RS05200	0.58	-1.8
1,093,619	+		ABZR87_RS05200	0.58	-2.4
1,093,620	-		ABZR87_RS05200	0.58	-1.5
1,093,620	-		ABZR87_RS05200	0.58	-0.6
1,093,622	+		ABZR87_RS05200	0.58	-3.5
1,093,622	+		ABZR87_RS05200	0.58	-3.3
1,093,622	+		ABZR87_RS05200	0.58	-2.8
1,093,685	+		ABZR87_RS05200	0.63	-3.8
1,093,685	+		ABZR87_RS05200	0.63	-2.1
1,093,685	+		ABZR87_RS05200	0.63	-0.7
1,093,685	+		ABZR87_RS05200	0.63	-2.5
1,093,686	-		ABZR87_RS05200	0.63	-1.0
1,093,686	-		ABZR87_RS05200	0.63	-2.7
1,093,686	-		ABZR87_RS05200	0.63	+1.2
1,093,686	-		ABZR87_RS05200	0.63	-1.5
1,093,781	+		ABZR87_RS05200	0.71	-1.4
1,093,781	+		ABZR87_RS05200	0.71	-2.3
1,093,781	+		ABZR87_RS05200	0.71	-1.3
1,093,781	+		ABZR87_RS05200	0.71	-2.1
1,093,781	+		ABZR87_RS05200	0.71	-0.1
1,093,781	+		ABZR87_RS05200	0.71	-3.6
1,093,781	+		ABZR87_RS05200	0.71	-1.7
1,093,781	+		ABZR87_RS05200	0.71	-1.1
1,093,782	-		ABZR87_RS05200	0.71	-5.5
1,093,782	-		ABZR87_RS05200	0.71	+1.2
1,093,782	-		ABZR87_RS05200	0.71	-1.3
1,093,790	+		ABZR87_RS05200	0.72	-0.1
1,093,814	+		ABZR87_RS05200	0.74	-3.0
1,093,814	+		ABZR87_RS05200	0.74	-4.5
1,093,814	+		ABZR87_RS05200	0.74	-3.1
1,093,832	+		ABZR87_RS05200	0.75	-1.8
1,093,832	+		ABZR87_RS05200	0.75	-2.0
1,093,832	+		ABZR87_RS05200	0.75	-3.0
1,093,832	+		ABZR87_RS05200	0.75	-1.6
1,093,832	+		ABZR87_RS05200	0.75	-2.8
1,093,832	+		ABZR87_RS05200	0.75	-1.0
1,093,832	+		ABZR87_RS05200	0.75	-2.1
1,093,833	-		ABZR87_RS05200	0.75	+0.9
1,093,833	-		ABZR87_RS05200	0.75	-2.4
1,093,833	-		ABZR87_RS05200	0.75	+2.5
1,093,859	+		ABZR87_RS05200	0.77	-3.1
1,093,859	+		ABZR87_RS05200	0.77	-2.5
1,093,859	+		ABZR87_RS05200	0.77	-1.9
1,093,925	+		ABZR87_RS05200	0.83	-2.4
1,093,925	+		ABZR87_RS05200	0.83	-1.2
1,093,926	-		ABZR87_RS05200	0.83	-2.9
1,093,926	-		ABZR87_RS05200	0.83	-2.3
1,094,022	-				-2.3
1,094,079	-				-4.1
1,094,099	+				-1.0
1,094,100	-				-0.4
1,094,102	+				-1.5
1,094,102	+				-2.1
1,094,102	+				-2.0
1,094,102	+				-1.4
1,094,103	-				-0.7
1,094,308	+		ABZR87_RS05205	0.28	-2.5
1,094,308	+		ABZR87_RS05205	0.28	-1.1
1,094,531	-		ABZR87_RS05205	0.63	-3.8
1,094,590	+		ABZR87_RS05205	0.72	-1.7
1,094,590	+		ABZR87_RS05205	0.72	+0.6
1,094,591	-		ABZR87_RS05205	0.72	+1.5
1,094,599	+		ABZR87_RS05205	0.74	-0.6
1,094,600	-		ABZR87_RS05205	0.74	+0.8
1,094,600	-		ABZR87_RS05205	0.74	-1.0
1,094,600	-		ABZR87_RS05205	0.74	-0.5
1,094,600	-		ABZR87_RS05205	0.74	-2.6
1,094,600	-		ABZR87_RS05205	0.74	-1.6
1,094,836	+				-0.1
1,094,837	-				-0.7
1,095,022	+		ABZR87_RS05210	0.20	+0.3
1,095,103	+		ABZR87_RS05210	0.31	-1.1
1,095,103	+		ABZR87_RS05210	0.31	-0.2
1,095,104	-		ABZR87_RS05210	0.31	+1.8
1,095,274	+		ABZR87_RS05210	0.54	-1.0
1,095,275	-		ABZR87_RS05210	0.54	-0.4
1,095,332	-		ABZR87_RS05210	0.62	-0.8
1,095,332	-		ABZR87_RS05210	0.62	+4.1
1,095,382	+		ABZR87_RS05210	0.69	-0.1
1,095,383	-		ABZR87_RS05210	0.69	-0.8
1,095,383	-		ABZR87_RS05210	0.69	+0.4
1,095,383	-		ABZR87_RS05210	0.69	+1.5
1,095,421	+		ABZR87_RS05210	0.74	+0.1
1,095,421	+		ABZR87_RS05210	0.74	-0.7
1,095,421	+		ABZR87_RS05210	0.74	-1.4
1,095,421	+		ABZR87_RS05210	0.74	-1.4
1,095,421	+		ABZR87_RS05210	0.74	-2.6
1,095,422	-		ABZR87_RS05210	0.74	-1.9
1,095,422	-		ABZR87_RS05210	0.74	+0.9
1,095,422	-		ABZR87_RS05210	0.74	+0.2
1,095,422	-		ABZR87_RS05210	0.74	+0.2
1,095,422	-		ABZR87_RS05210	0.74	-0.3
1,095,436	+		ABZR87_RS05210	0.76	-0.9
1,095,437	-		ABZR87_RS05210	0.76	+0.6
1,095,437	-		ABZR87_RS05210	0.76	-1.3
1,095,439	+		ABZR87_RS05210	0.76	+0.7
1,095,439	+		ABZR87_RS05210	0.76	-2.0
1,095,439	+		ABZR87_RS05210	0.76	-2.2
1,095,439	+		ABZR87_RS05210	0.76	+0.6
1,095,440	-		ABZR87_RS05210	0.76	-1.9
1,095,440	-		ABZR87_RS05210	0.76	-1.8
1,095,440	-		ABZR87_RS05210	0.76	-0.4
1,095,496	+		ABZR87_RS05210	0.84	-0.0
1,095,565	+				+0.6
1,095,565	+				+0.6
1,095,565	+				+1.0
1,095,613	+				+0.6
1,095,613	+				+3.4
1,095,613	+				+1.5
1,095,613	+				-1.2
1,095,613	+				-0.1
1,095,614	-				-1.4
1,095,614	-				+0.8
1,095,614	-				+1.9
1,095,614	-				-2.1
1,095,614	-				-0.8
1,095,755	+		ABZR87_RS05215	0.33	-1.5
1,095,755	+		ABZR87_RS05215	0.33	-0.5
1,095,755	+		ABZR87_RS05215	0.33	-1.7
1,095,756	-		ABZR87_RS05215	0.33	-1.9
1,095,756	-		ABZR87_RS05215	0.33	+0.6