Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04335

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04330 and ABZR87_RS04335 are separated by 350 nucleotidesABZR87_RS04335 and ABZR87_RS04340 are separated by 44 nucleotidesABZR87_RS04340 and ABZR87_RS04345 are separated by 14 nucleotides ABZR87_RS04330: ABZR87_RS04330 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 902,725 to 904,791 _RS04330 ABZR87_RS04335: ABZR87_RS04335 - septum site-determining protein MinC, at 905,142 to 905,927 _RS04335 ABZR87_RS04340: ABZR87_RS04340 - septum site-determining protein MinD, at 905,972 to 906,790 _RS04340 ABZR87_RS04345: ABZR87_RS04345 - cell division topological specificity factor MinE, at 906,805 to 907,059 _RS04345 Position (kb) 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 904.190 kb on + strand, within ABZR87_RS04330at 904.190 kb on + strand, within ABZR87_RS04330at 904.190 kb on + strand, within ABZR87_RS04330at 904.191 kb on - strand, within ABZR87_RS04330at 904.191 kb on - strand, within ABZR87_RS04330at 904.191 kb on - strand, within ABZR87_RS04330at 904.311 kb on + strand, within ABZR87_RS04330at 904.311 kb on + strand, within ABZR87_RS04330at 904.311 kb on + strand, within ABZR87_RS04330at 904.312 kb on - strand, within ABZR87_RS04330at 904.312 kb on - strand, within ABZR87_RS04330at 904.312 kb on - strand, within ABZR87_RS04330at 904.334 kb on + strand, within ABZR87_RS04330at 904.335 kb on - strand, within ABZR87_RS04330at 904.382 kb on + strand, within ABZR87_RS04330at 904.383 kb on - strand, within ABZR87_RS04330at 904.383 kb on - strand, within ABZR87_RS04330at 904.383 kb on - strand, within ABZR87_RS04330at 904.383 kb on - strand, within ABZR87_RS04330at 904.406 kb on + strand, within ABZR87_RS04330at 904.406 kb on + strand, within ABZR87_RS04330at 904.406 kb on + strand, within ABZR87_RS04330at 904.406 kb on + strand, within ABZR87_RS04330at 904.407 kb on - strand, within ABZR87_RS04330at 904.407 kb on - strand, within ABZR87_RS04330at 904.407 kb on - strand, within ABZR87_RS04330at 904.454 kb on + strand, within ABZR87_RS04330at 904.455 kb on - strand, within ABZR87_RS04330at 904.455 kb on - strand, within ABZR87_RS04330at 904.492 kb on - strand, within ABZR87_RS04330at 904.589 kb on + strandat 904.589 kb on + strandat 904.589 kb on + strandat 904.589 kb on + strandat 904.590 kb on - strandat 904.595 kb on + strandat 904.595 kb on + strandat 904.596 kb on - strandat 904.820 kb on + strandat 904.821 kb on - strandat 904.830 kb on - strandat 904.963 kb on + strandat 904.964 kb on - strandat 905.053 kb on + strandat 905.109 kb on + strandat 905.110 kb on - strandat 905.110 kb on - strandat 905.110 kb on - strandat 905.110 kb on - strandat 905.110 kb on - strandat 905.110 kb on - strandat 905.110 kb on - strandat 905.141 kb on + strandat 905.141 kb on + strandat 905.141 kb on + strandat 905.142 kb on - strandat 905.142 kb on - strandat 905.142 kb on - strandat 905.142 kb on - strandat 905.640 kb on + strand, within ABZR87_RS04335at 905.640 kb on + strand, within ABZR87_RS04335at 905.640 kb on + strand, within ABZR87_RS04335at 905.640 kb on + strand, within ABZR87_RS04335at 905.640 kb on + strand, within ABZR87_RS04335at 905.640 kb on + strand, within ABZR87_RS04335at 905.640 kb on + strand, within ABZR87_RS04335at 905.641 kb on - strand, within ABZR87_RS04335at 905.641 kb on - strand, within ABZR87_RS04335at 905.641 kb on - strand, within ABZR87_RS04335at 905.641 kb on - strand, within ABZR87_RS04335at 905.641 kb on - strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.712 kb on + strand, within ABZR87_RS04335at 905.713 kb on - strand, within ABZR87_RS04335at 905.713 kb on - strand, within ABZR87_RS04335at 905.713 kb on - strand, within ABZR87_RS04335at 905.713 kb on - strand, within ABZR87_RS04335at 905.713 kb on - strand, within ABZR87_RS04335at 905.718 kb on + strand, within ABZR87_RS04335at 905.718 kb on + strand, within ABZR87_RS04335at 905.718 kb on + strand, within ABZR87_RS04335at 905.718 kb on + strand, within ABZR87_RS04335at 905.718 kb on + strand, within ABZR87_RS04335at 905.718 kb on + strand, within ABZR87_RS04335at 905.718 kb on + strand, within ABZR87_RS04335at 905.719 kb on - strand, within ABZR87_RS04335at 905.719 kb on - strand, within ABZR87_RS04335at 905.823 kb on + strand, within ABZR87_RS04335at 905.824 kb on - strand, within ABZR87_RS04335at 905.824 kb on - strand, within ABZR87_RS04335at 905.824 kb on - strand, within ABZR87_RS04335at 905.857 kb on - strandat 905.857 kb on - strandat 905.951 kb on + strandat 905.952 kb on - strandat 905.956 kb on + strandat 905.956 kb on + strandat 905.957 kb on - strandat 905.964 kb on + strandat 905.965 kb on - strandat 905.988 kb on + strandat 905.989 kb on - strandat 905.989 kb on - strandat 905.989 kb on - strandat 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.143 kb on + strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.144 kb on - strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.317 kb on + strand, within ABZR87_RS04340at 906.318 kb on - strand, within ABZR87_RS04340at 906.318 kb on - strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.371 kb on + strand, within ABZR87_RS04340at 906.372 kb on - strand, within ABZR87_RS04340at 906.372 kb on - strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.518 kb on + strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.519 kb on - strand, within ABZR87_RS04340at 906.686 kb on + strand, within ABZR87_RS04340at 906.686 kb on + strand, within ABZR87_RS04340at 906.687 kb on - strand, within ABZR87_RS04340at 906.734 kb on + strandat 906.735 kb on - strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.743 kb on + strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.744 kb on - strandat 906.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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904,190 + ABZR87_RS04330 0.71 +2.1
904,190 + ABZR87_RS04330 0.71 +0.6
904,190 + ABZR87_RS04330 0.71 +2.5
904,191 - ABZR87_RS04330 0.71 +0.5
904,191 - ABZR87_RS04330 0.71 -2.1
904,191 - ABZR87_RS04330 0.71 -0.0
904,311 + ABZR87_RS04330 0.77 -0.9
904,311 + ABZR87_RS04330 0.77 +0.6
904,311 + ABZR87_RS04330 0.77 -0.4
904,312 - ABZR87_RS04330 0.77 -0.3
904,312 - ABZR87_RS04330 0.77 +0.1
904,312 - ABZR87_RS04330 0.77 +0.6
904,334 + ABZR87_RS04330 0.78 +0.1
904,335 - ABZR87_RS04330 0.78 -0.7
904,382 + ABZR87_RS04330 0.80 -1.1
904,383 - ABZR87_RS04330 0.80 +0.0
904,383 - ABZR87_RS04330 0.80 -1.2
904,383 - ABZR87_RS04330 0.80 +0.1
904,383 - ABZR87_RS04330 0.80 +1.3
904,406 + ABZR87_RS04330 0.81 +0.2
904,406 + ABZR87_RS04330 0.81 -2.1
904,406 + ABZR87_RS04330 0.81 +0.3
904,406 + ABZR87_RS04330 0.81 +0.2
904,407 - ABZR87_RS04330 0.81 -0.8
904,407 - ABZR87_RS04330 0.81 -2.6
904,407 - ABZR87_RS04330 0.81 -0.0
904,454 + ABZR87_RS04330 0.84 -1.2
904,455 - ABZR87_RS04330 0.84 -0.4
904,455 - ABZR87_RS04330 0.84 -0.9
904,492 - ABZR87_RS04330 0.85 +1.7
904,589 + -2.3
904,589 + +0.2
904,589 + -0.3
904,589 + +1.6
904,590 - -1.9
904,595 + -1.2
904,595 + +1.6
904,596 - -1.1
904,820 + +0.7
904,821 - -0.9
904,830 - +0.6
904,963 + -0.0
904,964 - -0.5
905,053 + +0.8
905,109 + +4.5
905,110 - +0.1
905,110 - +0.2
905,110 - +0.6
905,110 - +1.3
905,110 - +0.1
905,110 - -1.6
905,110 - +0.6
905,141 + +0.2
905,141 + +2.6
905,141 + -0.1
905,142 - -0.0
905,142 - +1.2
905,142 - -1.7
905,142 - -1.5
905,640 + ABZR87_RS04335 0.63 -2.4
905,640 + ABZR87_RS04335 0.63 -1.9
905,640 + ABZR87_RS04335 0.63 -0.7
905,640 + ABZR87_RS04335 0.63 -1.2
905,640 + ABZR87_RS04335 0.63 +1.3
905,640 + ABZR87_RS04335 0.63 -0.3
905,640 + ABZR87_RS04335 0.63 +0.2
905,641 - ABZR87_RS04335 0.63 +0.4
905,641 - ABZR87_RS04335 0.63 +2.1
905,641 - ABZR87_RS04335 0.63 +1.6
905,641 - ABZR87_RS04335 0.63 -0.0
905,641 - ABZR87_RS04335 0.63 -0.7
905,712 + ABZR87_RS04335 0.73 -1.1
905,712 + ABZR87_RS04335 0.73 +3.6
905,712 + ABZR87_RS04335 0.73 +0.4
905,712 + ABZR87_RS04335 0.73 -1.1
905,712 + ABZR87_RS04335 0.73 -2.2
905,712 + ABZR87_RS04335 0.73 -2.3
905,712 + ABZR87_RS04335 0.73 +1.6
905,712 + ABZR87_RS04335 0.73 +0.4
905,712 + ABZR87_RS04335 0.73 +1.3
905,712 + ABZR87_RS04335 0.73 -0.5
905,713 - ABZR87_RS04335 0.73 +0.6
905,713 - ABZR87_RS04335 0.73 +1.6
905,713 - ABZR87_RS04335 0.73 -0.8
905,713 - ABZR87_RS04335 0.73 -2.4
905,713 - ABZR87_RS04335 0.73 +0.5
905,718 + ABZR87_RS04335 0.73 -0.8
905,718 + ABZR87_RS04335 0.73 +0.7
905,718 + ABZR87_RS04335 0.73 +1.6
905,718 + ABZR87_RS04335 0.73 -1.7
905,718 + ABZR87_RS04335 0.73 -0.1
905,718 + ABZR87_RS04335 0.73 +1.6
905,718 + ABZR87_RS04335 0.73 -1.8
905,719 - ABZR87_RS04335 0.73 -0.6
905,719 - ABZR87_RS04335 0.73 -1.1
905,823 + ABZR87_RS04335 0.87 -0.5
905,824 - ABZR87_RS04335 0.87 -0.4
905,824 - ABZR87_RS04335 0.87 -1.0
905,824 - ABZR87_RS04335 0.87 -1.3
905,857 - -0.8
905,857 - -2.9
905,951 + -0.2
905,952 - +0.7
905,956 + +2.2
905,956 + -1.4
905,957 - +0.6
905,964 + +1.3
905,965 - -1.4
905,988 + -1.4
905,989 - +0.6
905,989 - -0.8
905,989 - +1.5
906,143 + ABZR87_RS04340 0.21 +0.8
906,143 + ABZR87_RS04340 0.21 -0.0
906,143 + ABZR87_RS04340 0.21 -2.2
906,143 + ABZR87_RS04340 0.21 +0.7
906,143 + ABZR87_RS04340 0.21 -0.2
906,143 + ABZR87_RS04340 0.21 -0.7
906,144 - ABZR87_RS04340 0.21 -0.9
906,144 - ABZR87_RS04340 0.21 -1.4
906,144 - ABZR87_RS04340 0.21 +0.6
906,317 + ABZR87_RS04340 0.42 +0.1
906,317 + ABZR87_RS04340 0.42 +0.4
906,317 + ABZR87_RS04340 0.42 +0.1
906,317 + ABZR87_RS04340 0.42 -0.6
906,318 - ABZR87_RS04340 0.42 -1.4
906,318 - ABZR87_RS04340 0.42 +1.6
906,371 + ABZR87_RS04340 0.49 +0.4
906,371 + ABZR87_RS04340 0.49 -1.8
906,371 + ABZR87_RS04340 0.49 -0.7
906,371 + ABZR87_RS04340 0.49 -0.4
906,371 + ABZR87_RS04340 0.49 -0.9
906,371 + ABZR87_RS04340 0.49 -2.4
906,372 - ABZR87_RS04340 0.49 +0.7
906,372 - ABZR87_RS04340 0.49 -0.3
906,518 + ABZR87_RS04340 0.67 +0.1
906,518 + ABZR87_RS04340 0.67 -1.8
906,518 + ABZR87_RS04340 0.67 -0.7
906,518 + ABZR87_RS04340 0.67 +5.8
906,518 + ABZR87_RS04340 0.67 -0.0
906,518 + ABZR87_RS04340 0.67 +0.4
906,518 + ABZR87_RS04340 0.67 -0.3
906,519 - ABZR87_RS04340 0.67 +3.0
906,519 - ABZR87_RS04340 0.67 +0.5
906,519 - ABZR87_RS04340 0.67 +0.0
906,686 + ABZR87_RS04340 0.87 +3.6
906,686 + ABZR87_RS04340 0.87 -0.3
906,687 - ABZR87_RS04340 0.87 -0.4
906,734 + +0.6
906,735 - -0.5
906,743 + +2.6
906,743 + -0.0
906,743 + +0.3
906,743 + -0.1
906,744 - +0.1
906,744 - -1.3
906,744 - -1.4
906,744 - +0.2
906,788 + -0.4

Or see this region's nucleotide sequence