Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04165 and ABZR87_RS04170 overlap by 15 nucleotides ABZR87_RS04170 and ABZR87_RS04175 are separated by 169 nucleotides ABZR87_RS04175 and ABZR87_RS04180 overlap by 11 nucleotides ABZR87_RS04180 and ABZR87_RS04185 are separated by 22 nucleotides
ABZR87_RS04165: ABZR87_RS04165 - SDR family oxidoreductase, at 872,576 to 873,544
_RS04165
ABZR87_RS04170: ABZR87_RS04170 - phosphonate degradation HD-domain oxygenase, at 873,530 to 874,081
_RS04170
ABZR87_RS04175: ABZR87_RS04175 - cupin domain-containing protein, at 874,251 to 874,628
_RS04175
ABZR87_RS04180: ABZR87_RS04180 - TSUP family transporter, at 874,618 to 875,376
_RS04180
ABZR87_RS04185: ABZR87_RS04185 - hypothetical protein, at 875,399 to 875,836
_RS04185
Position (kb) 874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 873.263 kb on + strand, within ABZR87_RS04165 at 873.264 kb on - strand, within ABZR87_RS04165 at 873.422 kb on + strand, within ABZR87_RS04165 at 873.422 kb on + strand, within ABZR87_RS04165 at 873.423 kb on - strand, within ABZR87_RS04165 at 873.423 kb on - strand, within ABZR87_RS04165 at 873.532 kb on - strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.717 kb on - strand, within ABZR87_RS04170 at 873.741 kb on + strand, within ABZR87_RS04170 at 873.741 kb on + strand, within ABZR87_RS04170 at 873.741 kb on + strand, within ABZR87_RS04170 at 873.742 kb on - strand, within ABZR87_RS04170 at 873.742 kb on - strand, within ABZR87_RS04170 at 873.744 kb on + strand, within ABZR87_RS04170 at 873.744 kb on + strand, within ABZR87_RS04170 at 873.745 kb on - strand, within ABZR87_RS04170 at 873.745 kb on - strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.850 kb on - strand, within ABZR87_RS04170 at 873.850 kb on - strand, within ABZR87_RS04170 at 873.850 kb on - strand, within ABZR87_RS04170 at 874.024 kb on - strand, within ABZR87_RS04170 at 874.024 kb on - strand, within ABZR87_RS04170 at 874.117 kb on - strand at 874.158 kb on + strand at 874.159 kb on - strand at 874.216 kb on + strand at 874.217 kb on - strand at 874.217 kb on - strand at 874.270 kb on + strand at 874.270 kb on + strand at 874.270 kb on + strand at 874.270 kb on + strand at 874.271 kb on - strand at 874.271 kb on - strand at 874.305 kb on + strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.423 kb on - strand, within ABZR87_RS04175 at 874.423 kb on - strand, within ABZR87_RS04175 at 874.637 kb on + strand at 874.637 kb on + strand at 874.638 kb on - strand at 874.638 kb on - strand at 874.638 kb on - strand at 874.871 kb on + strand, within ABZR87_RS04180 at 874.937 kb on + strand, within ABZR87_RS04180 at 874.938 kb on - strand, within ABZR87_RS04180 at 875.097 kb on + strand, within ABZR87_RS04180 at 875.097 kb on + strand, within ABZR87_RS04180 at 875.097 kb on + strand, within ABZR87_RS04180 at 875.098 kb on - strand, within ABZR87_RS04180 at 875.171 kb on + strand, within ABZR87_RS04180 at 875.172 kb on - strand, within ABZR87_RS04180 at 875.273 kb on + strand, within ABZR87_RS04180 at 875.400 kb on + strand at 875.400 kb on + strand at 875.522 kb on + strand, within ABZR87_RS04185 at 875.522 kb on + strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.541 kb on + strand, within ABZR87_RS04185 at 875.542 kb on - strand, within ABZR87_RS04185 at 875.542 kb on - strand, within ABZR87_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 873,263 + ABZR87_RS04165 0.71 +2.6 873,264 - ABZR87_RS04165 0.71 +0.4 873,422 + ABZR87_RS04165 0.87 -0.7 873,422 + ABZR87_RS04165 0.87 +2.8 873,423 - ABZR87_RS04165 0.87 +0.5 873,423 - ABZR87_RS04165 0.87 +0.7 873,532 - +1.2 873,532 - +1.2 873,532 - -1.7 873,717 - ABZR87_RS04170 0.34 -0.6 873,741 + ABZR87_RS04170 0.38 -0.6 873,741 + ABZR87_RS04170 0.38 -0.9 873,741 + ABZR87_RS04170 0.38 +2.6 873,742 - ABZR87_RS04170 0.38 -0.0 873,742 - ABZR87_RS04170 0.38 -1.8 873,744 + ABZR87_RS04170 0.39 -0.2 873,744 + ABZR87_RS04170 0.39 -0.3 873,745 - ABZR87_RS04170 0.39 -0.1 873,745 - ABZR87_RS04170 0.39 +0.1 873,849 + ABZR87_RS04170 0.58 -2.3 873,849 + ABZR87_RS04170 0.58 -0.5 873,849 + ABZR87_RS04170 0.58 -1.4 873,849 + ABZR87_RS04170 0.58 -0.8 873,850 - ABZR87_RS04170 0.58 -0.4 873,850 - ABZR87_RS04170 0.58 -2.4 873,850 - ABZR87_RS04170 0.58 -1.1 874,024 - ABZR87_RS04170 0.89 +2.2 874,024 - ABZR87_RS04170 0.89 +1.2 874,117 - -0.5 874,158 + -1.6 874,159 - +2.2 874,216 + -0.6 874,217 - +1.4 874,217 - +0.1 874,270 + +0.2 874,270 + +0.4 874,270 + -2.0 874,270 + -0.6 874,271 - +2.4 874,271 - -1.0 874,305 + ABZR87_RS04175 0.14 -0.4 874,306 - ABZR87_RS04175 0.15 +0.7 874,306 - ABZR87_RS04175 0.15 +1.2 874,306 - ABZR87_RS04175 0.15 -1.1 874,306 - ABZR87_RS04175 0.15 +0.5 874,306 - ABZR87_RS04175 0.15 +3.5 874,344 + ABZR87_RS04175 0.25 -2.4 874,344 + ABZR87_RS04175 0.25 -0.3 874,344 + ABZR87_RS04175 0.25 +0.4 874,344 + ABZR87_RS04175 0.25 -0.4 874,344 + ABZR87_RS04175 0.25 +0.7 874,344 + ABZR87_RS04175 0.25 -2.1 874,344 + ABZR87_RS04175 0.25 +0.4 874,344 + ABZR87_RS04175 0.25 -0.7 874,344 + ABZR87_RS04175 0.25 -1.2 874,345 - ABZR87_RS04175 0.25 +0.5 874,345 - ABZR87_RS04175 0.25 -1.4 874,345 - ABZR87_RS04175 0.25 -1.4 874,345 - ABZR87_RS04175 0.25 -2.1 874,345 - ABZR87_RS04175 0.25 -1.6 874,345 - ABZR87_RS04175 0.25 -1.0 874,345 - ABZR87_RS04175 0.25 +0.7 874,423 - ABZR87_RS04175 0.46 +0.5 874,423 - ABZR87_RS04175 0.46 -0.2 874,637 + +0.4 874,637 + +1.9 874,638 - -0.0 874,638 - +2.3 874,638 - -0.5 874,871 + ABZR87_RS04180 0.33 +0.3 874,937 + ABZR87_RS04180 0.42 -0.8 874,938 - ABZR87_RS04180 0.42 +0.3 875,097 + ABZR87_RS04180 0.63 -1.1 875,097 + ABZR87_RS04180 0.63 +4.5 875,097 + ABZR87_RS04180 0.63 -0.8 875,098 - ABZR87_RS04180 0.63 -0.5 875,171 + ABZR87_RS04180 0.73 +0.9 875,172 - ABZR87_RS04180 0.73 +0.4 875,273 + ABZR87_RS04180 0.86 -0.4 875,400 + +0.4 875,400 + -0.7 875,522 + ABZR87_RS04185 0.28 -0.5 875,522 + ABZR87_RS04185 0.28 +0.2 875,523 - ABZR87_RS04185 0.28 +0.4 875,523 - ABZR87_RS04185 0.28 -3.1 875,523 - ABZR87_RS04185 0.28 -0.9 875,523 - ABZR87_RS04185 0.28 +1.5 875,541 + ABZR87_RS04185 0.32 +0.5 875,542 - ABZR87_RS04185 0.33 -1.3 875,542 - ABZR87_RS04185 0.33 +1.0
Or see this region's nucleotide sequence