Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03050

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03040 and ABZR87_RS03045 are separated by 22 nucleotidesABZR87_RS03045 and ABZR87_RS03050 are separated by 172 nucleotidesABZR87_RS03050 and ABZR87_RS03055 are separated by 113 nucleotides ABZR87_RS03040: ABZR87_RS03040 - carbohydrate ABC transporter permease, at 637,903 to 638,736 _RS03040 ABZR87_RS03045: ABZR87_RS03045 - DUF2160 domain-containing protein, at 638,759 to 639,040 _RS03045 ABZR87_RS03050: ABZR87_RS03050 - ABC transporter substrate-binding protein, at 639,213 to 640,958 _RS03050 ABZR87_RS03055: ABZR87_RS03055 - glycerol kinase GlpK, at 641,072 to 642,568 _RS03055 Position (kb) 639 640 641Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 638.300 kb on - strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.701 kb on + strandat 638.701 kb on + strandat 638.702 kb on - strandat 638.702 kb on - strandat 638.936 kb on + strand, within ABZR87_RS03045at 638.936 kb on + strand, within ABZR87_RS03045at 638.936 kb on + strand, within ABZR87_RS03045at 638.937 kb on - strand, within ABZR87_RS03045at 638.937 kb on - strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 639.116 kb on + strandat 639.117 kb on - strandat 639.117 kb on - strandat 639.190 kb on + strandat 639.191 kb on - strandat 639.191 kb on - strandat 639.208 kb on + strandat 639.208 kb on + strandat 639.209 kb on - strandat 639.209 kb on - strandat 639.209 kb on - strandat 639.462 kb on + strand, within ABZR87_RS03050at 639.462 kb on + strand, within ABZR87_RS03050at 639.463 kb on - strand, within ABZR87_RS03050at 639.463 kb on - strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.631 kb on - strand, within ABZR87_RS03050at 639.631 kb on - strand, within ABZR87_RS03050at 639.663 kb on + strand, within ABZR87_RS03050at 639.663 kb on + strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.759 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.792 kb on + strand, within ABZR87_RS03050at 639.852 kb on + strand, within ABZR87_RS03050at 639.852 kb on + strand, within ABZR87_RS03050at 639.852 kb on + strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.853 kb on - strand, within ABZR87_RS03050at 639.891 kb on + strand, within ABZR87_RS03050at 639.891 kb on + strand, within ABZR87_RS03050at 639.892 kb on - strand, within ABZR87_RS03050at 639.892 kb on - strand, within ABZR87_RS03050at 639.892 kb on - strand, within ABZR87_RS03050at 639.934 kb on + strand, within ABZR87_RS03050at 639.935 kb on - strand, within ABZR87_RS03050at 640.162 kb on - strand, within ABZR87_RS03050at 640.162 kb on - strand, within ABZR87_RS03050at 640.162 kb on - strand, within ABZR87_RS03050at 640.162 kb on - strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.197 kb on + strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.285 kb on - strand, within ABZR87_RS03050at 640.476 kb on + strand, within ABZR87_RS03050at 640.476 kb on + strand, within ABZR87_RS03050at 640.477 kb on - strand, within ABZR87_RS03050at 640.566 kb on + strand, within ABZR87_RS03050at 640.566 kb on + strand, within ABZR87_RS03050at 640.566 kb on + strand, within ABZR87_RS03050at 640.567 kb on - strand, within ABZR87_RS03050at 640.567 kb on - strand, within ABZR87_RS03050at 640.590 kb on + strand, within ABZR87_RS03050at 640.590 kb on + strand, within ABZR87_RS03050at 640.611 kb on + strand, within ABZR87_RS03050at 640.612 kb on - strand, within ABZR87_RS03050at 640.612 kb on - strand, within ABZR87_RS03050at 640.915 kb on - strandat 640.915 kb on - strandat 640.915 kb on - strandat 640.999 kb on + strandat 641.000 kb on - strandat 641.020 kb on - strandat 641.071 kb on + strandat 641.078 kb on + strandat 641.078 kb on + strandat 641.078 kb on + strandat 641.078 kb on + strandat 641.079 kb on - strandat 641.079 kb on - strandat 641.436 kb on + strand, within ABZR87_RS03055at 641.436 kb on + strand, within ABZR87_RS03055at 641.436 kb on + strand, within ABZR87_RS03055at 641.436 kb on + strand, within ABZR87_RS03055at 641.437 kb on - strand, within ABZR87_RS03055at 641.437 kb on - strand, within ABZR87_RS03055at 641.437 kb on - strand, within ABZR87_RS03055at 641.468 kb on + strand, within ABZR87_RS03055at 641.469 kb on - strand, within ABZR87_RS03055at 641.613 kb on + strand, within ABZR87_RS03055at 641.614 kb on - strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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638,300 - ABZR87_RS03040 0.48 +0.3
638,431 + ABZR87_RS03040 0.63 -0.9
638,431 + ABZR87_RS03040 0.63 -1.5
638,431 + ABZR87_RS03040 0.63 +2.4
638,444 - ABZR87_RS03040 0.65 -1.2
638,444 - ABZR87_RS03040 0.65 +1.5
638,529 + ABZR87_RS03040 0.75 -2.3
638,529 + ABZR87_RS03040 0.75 -0.6
638,529 + ABZR87_RS03040 0.75 -1.5
638,530 - ABZR87_RS03040 0.75 -0.1
638,530 - ABZR87_RS03040 0.75 -2.1
638,530 - ABZR87_RS03040 0.75 -0.7
638,530 - ABZR87_RS03040 0.75 +2.8
638,701 + -2.2
638,701 + -2.1
638,702 - +0.1
638,702 - +4.2
638,936 + ABZR87_RS03045 0.63 +0.3
638,936 + ABZR87_RS03045 0.63 -0.1
638,936 + ABZR87_RS03045 0.63 +0.9
638,937 - ABZR87_RS03045 0.63 -0.6
638,937 - ABZR87_RS03045 0.63 +1.1
638,938 + ABZR87_RS03045 0.63 +2.0
638,938 + ABZR87_RS03045 0.63 -1.4
638,938 + ABZR87_RS03045 0.63 +1.0
638,939 - ABZR87_RS03045 0.64 -0.5
638,939 - ABZR87_RS03045 0.64 -1.5
638,939 - ABZR87_RS03045 0.64 +0.6
638,939 - ABZR87_RS03045 0.64 -1.3
639,116 + +0.0
639,117 - +3.6
639,117 - +1.3
639,190 + -1.9
639,191 - -1.1
639,191 - -1.7
639,208 + +0.2
639,208 + +0.8
639,209 - -0.8
639,209 - +0.5
639,209 - -0.9
639,462 + ABZR87_RS03050 0.14 -0.6
639,462 + ABZR87_RS03050 0.14 -0.0
639,463 - ABZR87_RS03050 0.14 -0.9
639,463 - ABZR87_RS03050 0.14 -1.2
639,588 + ABZR87_RS03050 0.21 -1.4
639,588 + ABZR87_RS03050 0.21 -0.3
639,588 + ABZR87_RS03050 0.21 -0.4
639,588 + ABZR87_RS03050 0.21 +0.7
639,588 + ABZR87_RS03050 0.21 -2.0
639,589 - ABZR87_RS03050 0.22 -2.6
639,589 - ABZR87_RS03050 0.22 -1.3
639,589 - ABZR87_RS03050 0.22 -0.9
639,589 - ABZR87_RS03050 0.22 -2.0
639,589 - ABZR87_RS03050 0.22 -2.0
639,630 + ABZR87_RS03050 0.24 -0.9
639,630 + ABZR87_RS03050 0.24 -0.1
639,630 + ABZR87_RS03050 0.24 +0.7
639,631 - ABZR87_RS03050 0.24 -1.2
639,631 - ABZR87_RS03050 0.24 -1.2
639,663 + ABZR87_RS03050 0.26 -1.9
639,663 + ABZR87_RS03050 0.26 -1.5
639,664 - ABZR87_RS03050 0.26 +0.4
639,664 - ABZR87_RS03050 0.26 -2.2
639,664 - ABZR87_RS03050 0.26 +0.4
639,664 - ABZR87_RS03050 0.26 +0.4
639,759 + ABZR87_RS03050 0.31 +1.2
639,792 + ABZR87_RS03050 0.33 +0.6
639,792 + ABZR87_RS03050 0.33 -1.1
639,792 + ABZR87_RS03050 0.33 -1.5
639,792 + ABZR87_RS03050 0.33 -0.1
639,792 + ABZR87_RS03050 0.33 -1.2
639,852 + ABZR87_RS03050 0.37 +0.4
639,852 + ABZR87_RS03050 0.37 -0.6
639,852 + ABZR87_RS03050 0.37 +0.1
639,853 - ABZR87_RS03050 0.37 +1.3
639,853 - ABZR87_RS03050 0.37 -2.5
639,853 - ABZR87_RS03050 0.37 +0.6
639,853 - ABZR87_RS03050 0.37 -0.5
639,853 - ABZR87_RS03050 0.37 +0.9
639,853 - ABZR87_RS03050 0.37 -1.1
639,891 + ABZR87_RS03050 0.39 -0.3
639,891 + ABZR87_RS03050 0.39 -1.0
639,892 - ABZR87_RS03050 0.39 -0.5
639,892 - ABZR87_RS03050 0.39 +0.1
639,892 - ABZR87_RS03050 0.39 +0.1
639,934 + ABZR87_RS03050 0.41 -2.6
639,935 - ABZR87_RS03050 0.41 -0.3
640,162 - ABZR87_RS03050 0.54 -0.0
640,162 - ABZR87_RS03050 0.54 -1.2
640,162 - ABZR87_RS03050 0.54 +0.1
640,162 - ABZR87_RS03050 0.54 -0.9
640,176 + ABZR87_RS03050 0.55 -0.4
640,176 + ABZR87_RS03050 0.55 +0.9
640,176 + ABZR87_RS03050 0.55 -1.0
640,176 + ABZR87_RS03050 0.55 -1.6
640,177 - ABZR87_RS03050 0.55 +1.0
640,177 - ABZR87_RS03050 0.55 +1.6
640,177 - ABZR87_RS03050 0.55 +0.3
640,177 - ABZR87_RS03050 0.55 +4.9
640,177 - ABZR87_RS03050 0.55 +0.0
640,177 - ABZR87_RS03050 0.55 -2.1
640,197 + ABZR87_RS03050 0.56 -0.5
640,198 - ABZR87_RS03050 0.56 +0.8
640,198 - ABZR87_RS03050 0.56 +0.3
640,198 - ABZR87_RS03050 0.56 +0.3
640,198 - ABZR87_RS03050 0.56 -0.3
640,198 - ABZR87_RS03050 0.56 -1.8
640,285 - ABZR87_RS03050 0.61 -0.4
640,476 + ABZR87_RS03050 0.72 +0.3
640,476 + ABZR87_RS03050 0.72 -0.4
640,477 - ABZR87_RS03050 0.72 -0.8
640,566 + ABZR87_RS03050 0.77 -0.2
640,566 + ABZR87_RS03050 0.77 +0.2
640,566 + ABZR87_RS03050 0.77 -0.9
640,567 - ABZR87_RS03050 0.78 -0.4
640,567 - ABZR87_RS03050 0.78 -1.2
640,590 + ABZR87_RS03050 0.79 +0.7
640,590 + ABZR87_RS03050 0.79 -1.2
640,611 + ABZR87_RS03050 0.80 +1.3
640,612 - ABZR87_RS03050 0.80 -0.1
640,612 - ABZR87_RS03050 0.80 -1.1
640,915 - -2.3
640,915 - -0.9
640,915 - -0.0
640,999 + +0.3
641,000 - -0.1
641,020 - -0.1
641,071 + +0.3
641,078 + +0.2
641,078 + +3.1
641,078 + +0.4
641,078 + +0.6
641,079 - +1.3
641,079 - -0.5
641,436 + ABZR87_RS03055 0.24 -1.5
641,436 + ABZR87_RS03055 0.24 -2.4
641,436 + ABZR87_RS03055 0.24 -0.7
641,436 + ABZR87_RS03055 0.24 -1.1
641,437 - ABZR87_RS03055 0.24 +0.5
641,437 - ABZR87_RS03055 0.24 -0.4
641,437 - ABZR87_RS03055 0.24 -0.4
641,468 + ABZR87_RS03055 0.26 +0.3
641,469 - ABZR87_RS03055 0.27 -0.1
641,613 + ABZR87_RS03055 0.36 -0.6
641,614 - ABZR87_RS03055 0.36 -0.8
641,855 + ABZR87_RS03055 0.52 +0.5
641,855 + ABZR87_RS03055 0.52 -0.7
641,855 + ABZR87_RS03055 0.52 +0.0
641,855 + ABZR87_RS03055 0.52 +0.3
641,856 - ABZR87_RS03055 0.52 +0.4
641,856 - ABZR87_RS03055 0.52 +0.1
641,856 - ABZR87_RS03055 0.52 -2.0
641,856 - ABZR87_RS03055 0.52 +0.9
641,856 - ABZR87_RS03055 0.52 -1.1

Or see this region's nucleotide sequence