Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02275

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02265 and ABZR87_RS02270 are separated by 19 nucleotidesABZR87_RS02270 and ABZR87_RS02275 are separated by 22 nucleotidesABZR87_RS02275 and ABZR87_RS02280 are separated by 121 nucleotides ABZR87_RS02265: ABZR87_RS02265 - Grx4 family monothiol glutaredoxin, at 485,970 to 486,281 _RS02265 ABZR87_RS02270: ABZR87_RS02270 - UbiX family flavin prenyltransferase, at 486,301 to 486,924 _RS02270 ABZR87_RS02275: ABZR87_RS02275 - hypothetical protein, at 486,947 to 487,117 _RS02275 ABZR87_RS02280: ABZR87_RS02280 - hypothetical protein, at 487,239 to 487,979 _RS02280 Position (kb) 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 486.165 kb on + strand, within ABZR87_RS02265at 486.165 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.195 kb on + strand, within ABZR87_RS02265at 486.196 kb on - strand, within ABZR87_RS02265at 486.196 kb on - strand, within ABZR87_RS02265at 486.196 kb on - strand, within ABZR87_RS02265at 486.196 kb on - strand, within ABZR87_RS02265at 486.196 kb on - strand, within ABZR87_RS02265at 486.196 kb on - strand, within ABZR87_RS02265at 486.196 kb on - strand, within ABZR87_RS02265at 486.197 kb on + strand, within ABZR87_RS02265at 486.197 kb on + strand, within ABZR87_RS02265at 486.197 kb on + strand, within ABZR87_RS02265at 486.197 kb on + strand, within ABZR87_RS02265at 486.243 kb on + strand, within ABZR87_RS02265at 486.243 kb on + strand, within ABZR87_RS02265at 486.244 kb on - strand, within ABZR87_RS02265at 486.244 kb on - strand, within ABZR87_RS02265at 486.244 kb on - strand, within ABZR87_RS02265at 486.244 kb on - strand, within ABZR87_RS02265at 486.244 kb on - strand, within ABZR87_RS02265at 486.923 kb on - strandat 486.923 kb on - strandat 486.960 kb on + strandat 486.960 kb on + strandat 486.961 kb on - strandat 486.961 kb on - strandat 486.961 kb on - strandat 486.969 kb on + strand, within ABZR87_RS02275at 486.969 kb on + strand, within ABZR87_RS02275at 486.969 kb on + strand, within ABZR87_RS02275at 486.969 kb on + strand, within ABZR87_RS02275at 486.970 kb on - strand, within ABZR87_RS02275at 486.970 kb on - strand, within ABZR87_RS02275at 486.970 kb on - strand, within ABZR87_RS02275at 486.991 kb on - strand, within ABZR87_RS02275at 486.999 kb on + strand, within ABZR87_RS02275at 487.002 kb on + strand, within ABZR87_RS02275at 487.002 kb on + strand, within ABZR87_RS02275at 487.003 kb on - strand, within ABZR87_RS02275at 487.003 kb on - strand, within ABZR87_RS02275at 487.026 kb on + strand, within ABZR87_RS02275at 487.026 kb on + strand, within ABZR87_RS02275at 487.026 kb on + strand, within ABZR87_RS02275at 487.027 kb on - strand, within ABZR87_RS02275at 487.027 kb on - strand, within ABZR87_RS02275at 487.121 kb on + strandat 487.121 kb on + strandat 487.122 kb on - strandat 487.122 kb on - strandat 487.122 kb on - strandat 487.122 kb on - strandat 487.122 kb on - strandat 487.160 kb on + strandat 487.160 kb on + strandat 487.160 kb on + strandat 487.160 kb on + strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.161 kb on - strandat 487.162 kb on + strandat 487.162 kb on + strandat 487.162 kb on + strandat 487.162 kb on + strandat 487.162 kb on + strandat 487.162 kb on + strandat 487.162 kb on + strandat 487.163 kb on - strandat 487.163 kb on - strandat 487.163 kb on - strandat 487.163 kb on - strandat 487.163 kb on - strandat 487.198 kb on + strandat 487.198 kb on + strandat 487.199 kb on - strandat 487.199 kb on - strandat 487.207 kb on + strandat 487.208 kb on - strandat 487.218 kb on + strandat 487.219 kb on - strandat 487.234 kb on + strandat 487.234 kb on + strandat 487.235 kb on - strandat 487.235 kb on - strandat 487.235 kb on - strandat 487.235 kb on - strandat 487.235 kb on - strandat 487.247 kb on + strandat 487.247 kb on + strandat 487.248 kb on - strandat 487.248 kb on - strandat 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.732 kb on + strand, within ABZR87_RS02280at 487.733 kb on - strand, within ABZR87_RS02280at 487.764 kb on + strand, within ABZR87_RS02280at 487.764 kb on + strand, within ABZR87_RS02280at 487.764 kb on + strand, within ABZR87_RS02280at 487.765 kb on - strand, within ABZR87_RS02280at 488.113 kb on + strandat 488.113 kb on + strandat 488.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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486,165 + ABZR87_RS02265 0.62 +2.0
486,165 + ABZR87_RS02265 0.62 +0.6
486,195 + ABZR87_RS02265 0.72 +1.7
486,195 + ABZR87_RS02265 0.72 +0.7
486,195 + ABZR87_RS02265 0.72 +0.9
486,195 + ABZR87_RS02265 0.72 +1.3
486,195 + ABZR87_RS02265 0.72 +1.0
486,195 + ABZR87_RS02265 0.72 +0.3
486,195 + ABZR87_RS02265 0.72 +0.3
486,195 + ABZR87_RS02265 0.72 -0.3
486,195 + ABZR87_RS02265 0.72 +1.4
486,195 + ABZR87_RS02265 0.72 +1.2
486,195 + ABZR87_RS02265 0.72 +1.2
486,196 - ABZR87_RS02265 0.72 -0.1
486,196 - ABZR87_RS02265 0.72 -0.3
486,196 - ABZR87_RS02265 0.72 +0.8
486,196 - ABZR87_RS02265 0.72 +1.0
486,196 - ABZR87_RS02265 0.72 +3.6
486,196 - ABZR87_RS02265 0.72 +1.0
486,196 - ABZR87_RS02265 0.72 -2.6
486,197 + ABZR87_RS02265 0.73 -0.3
486,197 + ABZR87_RS02265 0.73 +1.3
486,197 + ABZR87_RS02265 0.73 -1.2
486,197 + ABZR87_RS02265 0.73 +1.4
486,243 + ABZR87_RS02265 0.88 +0.2
486,243 + ABZR87_RS02265 0.88 +1.2
486,244 - ABZR87_RS02265 0.88 -0.9
486,244 - ABZR87_RS02265 0.88 +3.0
486,244 - ABZR87_RS02265 0.88 -0.6
486,244 - ABZR87_RS02265 0.88 +1.7
486,244 - ABZR87_RS02265 0.88 -0.3
486,923 - -1.1
486,923 - +0.1
486,960 + -0.2
486,960 + +0.6
486,961 - +0.3
486,961 - +0.5
486,961 - -2.5
486,969 + ABZR87_RS02275 0.13 +1.6
486,969 + ABZR87_RS02275 0.13 -0.1
486,969 + ABZR87_RS02275 0.13 -2.1
486,969 + ABZR87_RS02275 0.13 +0.1
486,970 - ABZR87_RS02275 0.13 +0.2
486,970 - ABZR87_RS02275 0.13 -1.9
486,970 - ABZR87_RS02275 0.13 -0.0
486,991 - ABZR87_RS02275 0.26 +0.4
486,999 + ABZR87_RS02275 0.30 +0.1
487,002 + ABZR87_RS02275 0.32 +0.9
487,002 + ABZR87_RS02275 0.32 -2.0
487,003 - ABZR87_RS02275 0.33 -0.3
487,003 - ABZR87_RS02275 0.33 -1.1
487,026 + ABZR87_RS02275 0.46 -1.5
487,026 + ABZR87_RS02275 0.46 +1.6
487,026 + ABZR87_RS02275 0.46 +0.9
487,027 - ABZR87_RS02275 0.47 -1.5
487,027 - ABZR87_RS02275 0.47 -0.6
487,121 + +1.6
487,121 + +1.4
487,122 - +0.5
487,122 - -0.3
487,122 - +0.2
487,122 - +0.6
487,122 - +0.8
487,160 + -0.6
487,160 + +1.9
487,160 + -0.5
487,160 + +1.1
487,161 - -0.5
487,161 - +0.3
487,161 - +0.1
487,161 - -1.8
487,161 - -0.3
487,161 - +0.8
487,161 - -0.4
487,161 - +1.3
487,161 - -1.4
487,161 - +1.1
487,162 + +0.1
487,162 + +0.7
487,162 + -0.7
487,162 + -0.2
487,162 + +0.4
487,162 + -1.1
487,162 + -0.2
487,163 - +0.2
487,163 - -0.2
487,163 - -1.1
487,163 - -0.2
487,163 - -0.3
487,198 + +1.7
487,198 + -0.1
487,199 - +0.8
487,199 - +0.9
487,207 + -0.6
487,208 - +0.4
487,218 + -0.8
487,219 - +0.9
487,234 + -1.4
487,234 + +1.3
487,235 - +0.1
487,235 - +0.5
487,235 - -0.3
487,235 - -1.1
487,235 - +0.1
487,247 + +0.4
487,247 + -0.1
487,248 - -1.1
487,248 - -0.2
487,432 + ABZR87_RS02280 0.26 -0.7
487,432 + ABZR87_RS02280 0.26 +0.8
487,432 + ABZR87_RS02280 0.26 -0.0
487,432 + ABZR87_RS02280 0.26 -0.3
487,432 + ABZR87_RS02280 0.26 +0.8
487,432 + ABZR87_RS02280 0.26 -2.9
487,432 + ABZR87_RS02280 0.26 +2.0
487,432 + ABZR87_RS02280 0.26 +0.5
487,432 + ABZR87_RS02280 0.26 -1.7
487,432 + ABZR87_RS02280 0.26 +1.4
487,432 + ABZR87_RS02280 0.26 +1.2
487,432 + ABZR87_RS02280 0.26 -2.5
487,432 + ABZR87_RS02280 0.26 +0.0
487,432 + ABZR87_RS02280 0.26 -0.6
487,432 + ABZR87_RS02280 0.26 -1.2
487,433 - ABZR87_RS02280 0.26 +0.0
487,433 - ABZR87_RS02280 0.26 -3.3
487,433 - ABZR87_RS02280 0.26 +0.4
487,433 - ABZR87_RS02280 0.26 -2.7
487,433 - ABZR87_RS02280 0.26 -0.6
487,433 - ABZR87_RS02280 0.26 -3.4
487,433 - ABZR87_RS02280 0.26 -0.3
487,732 + ABZR87_RS02280 0.67 -1.2
487,733 - ABZR87_RS02280 0.67 -0.8
487,764 + ABZR87_RS02280 0.71 -0.2
487,764 + ABZR87_RS02280 0.71 +0.1
487,764 + ABZR87_RS02280 0.71 -1.3
487,765 - ABZR87_RS02280 0.71 +0.7
488,113 + +0.6
488,113 + +0.0
488,114 - -0.4

Or see this region's nucleotide sequence