Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01755

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01750 and ABZR87_RS01755 are separated by 39 nucleotidesABZR87_RS01755 and ABZR87_RS01760 overlap by 4 nucleotidesABZR87_RS01760 and ABZR87_RS01765 are separated by 45 nucleotides ABZR87_RS01750: ABZR87_RS01750 - sigma-54 dependent transcriptional regulator, at 372,038 to 373,663 _RS01750 ABZR87_RS01755: ABZR87_RS01755 - ATP-binding protein, at 373,703 to 375,742 _RS01755 ABZR87_RS01760: ABZR87_RS01760 - PP0621 family protein, at 375,739 to 376,005 _RS01760 ABZR87_RS01765: ABZR87_RS01765 - cytochrome c biogenesis protein CcsA, at 376,051 to 376,962 _RS01765 Position (kb) 373 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 372.750 kb on + strand, within ABZR87_RS01750at 372.750 kb on + strand, within ABZR87_RS01750at 372.751 kb on - strand, within ABZR87_RS01750at 373.011 kb on + strand, within ABZR87_RS01750at 373.347 kb on + strand, within ABZR87_RS01750at 373.347 kb on + strand, within ABZR87_RS01750at 373.348 kb on - strand, within ABZR87_RS01750at 373.704 kb on + strandat 373.705 kb on - strandat 373.861 kb on + strandat 373.861 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.881 kb on + strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.882 kb on - strandat 373.951 kb on + strand, within ABZR87_RS01755at 374.010 kb on + strand, within ABZR87_RS01755at 374.011 kb on - strand, within ABZR87_RS01755at 374.049 kb on + strand, within ABZR87_RS01755at 374.346 kb on - strand, within ABZR87_RS01755at 374.694 kb on + strand, within ABZR87_RS01755at 374.694 kb on + strand, within ABZR87_RS01755at 374.695 kb on - strand, within ABZR87_RS01755at 375.039 kb on + strand, within ABZR87_RS01755at 375.039 kb on + strand, within ABZR87_RS01755at 375.135 kb on + strand, within ABZR87_RS01755at 375.135 kb on + strand, within ABZR87_RS01755at 375.135 kb on + strand, within ABZR87_RS01755at 375.135 kb on + strand, within ABZR87_RS01755at 375.135 kb on + strand, within ABZR87_RS01755at 375.136 kb on - strand, within ABZR87_RS01755at 375.136 kb on - strand, within ABZR87_RS01755at 375.136 kb on - strand, within ABZR87_RS01755at 375.136 kb on - strand, within ABZR87_RS01755at 375.159 kb on + strand, within ABZR87_RS01755at 375.159 kb on + strand, within ABZR87_RS01755at 375.159 kb on + strand, within ABZR87_RS01755at 375.159 kb on + strand, within ABZR87_RS01755at 375.160 kb on - strand, within ABZR87_RS01755at 375.160 kb on - strand, within ABZR87_RS01755at 375.160 kb on - strand, within ABZR87_RS01755at 375.160 kb on - strand, within ABZR87_RS01755at 375.160 kb on - strand, within ABZR87_RS01755at 375.171 kb on + strand, within ABZR87_RS01755at 375.171 kb on + strand, within ABZR87_RS01755at 375.172 kb on - strand, within ABZR87_RS01755at 375.366 kb on + strand, within ABZR87_RS01755at 375.366 kb on + strand, within ABZR87_RS01755at 375.366 kb on + strand, within ABZR87_RS01755at 375.366 kb on + strand, within ABZR87_RS01755at 375.366 kb on + strand, within ABZR87_RS01755at 375.367 kb on - strand, within ABZR87_RS01755at 375.367 kb on - strand, within ABZR87_RS01755at 375.477 kb on + strand, within ABZR87_RS01755at 375.478 kb on - strand, within ABZR87_RS01755at 375.600 kb on + strandat 375.600 kb on + strandat 375.601 kb on - strandat 375.830 kb on - strand, within ABZR87_RS01760at 376.026 kb on + strandat 376.027 kb on - strandat 376.027 kb on - strandat 376.027 kb on - strandat 376.027 kb on - strandat 376.027 kb on - strandat 376.052 kb on + strandat 376.097 kb on + strandat 376.098 kb on - strandat 376.098 kb on - strandat 376.478 kb on + strand, within ABZR87_RS01765at 376.478 kb on + strand, within ABZR87_RS01765at 376.530 kb on - strand, within ABZR87_RS01765at 376.530 kb on - strand, within ABZR87_RS01765at 376.682 kb on + strand, within ABZR87_RS01765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
372,750 + ABZR87_RS01750 0.44 -1.5
372,750 + ABZR87_RS01750 0.44 +0.4
372,751 - ABZR87_RS01750 0.44 -1.2
373,011 + ABZR87_RS01750 0.60 +0.1
373,347 + ABZR87_RS01750 0.81 -2.0
373,347 + ABZR87_RS01750 0.81 +1.1
373,348 - ABZR87_RS01750 0.81 -0.5
373,704 + -0.2
373,705 - -2.1
373,861 + +1.2
373,861 + -0.7
373,881 + +0.1
373,881 + -2.6
373,881 + -0.3
373,881 + -1.2
373,881 + +0.1
373,882 - -0.2
373,882 - +0.4
373,882 - -2.1
373,882 - +0.9
373,882 - -1.9
373,882 - -2.8
373,882 - +0.3
373,951 + ABZR87_RS01755 0.12 +0.1
374,010 + ABZR87_RS01755 0.15 -0.1
374,011 - ABZR87_RS01755 0.15 -0.7
374,049 + ABZR87_RS01755 0.17 +1.2
374,346 - ABZR87_RS01755 0.32 -1.3
374,694 + ABZR87_RS01755 0.49 -0.0
374,694 + ABZR87_RS01755 0.49 -1.5
374,695 - ABZR87_RS01755 0.49 -0.5
375,039 + ABZR87_RS01755 0.65 -0.0
375,039 + ABZR87_RS01755 0.65 -1.4
375,135 + ABZR87_RS01755 0.70 -0.9
375,135 + ABZR87_RS01755 0.70 +0.4
375,135 + ABZR87_RS01755 0.70 -2.6
375,135 + ABZR87_RS01755 0.70 +2.4
375,135 + ABZR87_RS01755 0.70 -0.1
375,136 - ABZR87_RS01755 0.70 -0.3
375,136 - ABZR87_RS01755 0.70 -0.7
375,136 - ABZR87_RS01755 0.70 +0.9
375,136 - ABZR87_RS01755 0.70 +0.5
375,159 + ABZR87_RS01755 0.71 +0.2
375,159 + ABZR87_RS01755 0.71 +0.1
375,159 + ABZR87_RS01755 0.71 -0.6
375,159 + ABZR87_RS01755 0.71 -0.3
375,160 - ABZR87_RS01755 0.71 -1.4
375,160 - ABZR87_RS01755 0.71 -0.5
375,160 - ABZR87_RS01755 0.71 +0.9
375,160 - ABZR87_RS01755 0.71 -1.2
375,160 - ABZR87_RS01755 0.71 -1.6
375,171 + ABZR87_RS01755 0.72 -0.8
375,171 + ABZR87_RS01755 0.72 -0.8
375,172 - ABZR87_RS01755 0.72 -0.2
375,366 + ABZR87_RS01755 0.82 -2.4
375,366 + ABZR87_RS01755 0.82 -0.4
375,366 + ABZR87_RS01755 0.82 -0.3
375,366 + ABZR87_RS01755 0.82 +3.6
375,366 + ABZR87_RS01755 0.82 -1.1
375,367 - ABZR87_RS01755 0.82 -0.2
375,367 - ABZR87_RS01755 0.82 +1.1
375,477 + ABZR87_RS01755 0.87 +1.1
375,478 - ABZR87_RS01755 0.87 -2.0
375,600 + -0.2
375,600 + -0.3
375,601 - -1.0
375,830 - ABZR87_RS01760 0.34 -0.4
376,026 + -1.7
376,027 - +1.0
376,027 - +0.8
376,027 - -0.7
376,027 - +0.4
376,027 - +1.5
376,052 + -2.0
376,097 + +3.6
376,098 - +0.8
376,098 - -1.0
376,478 + ABZR87_RS01765 0.47 +0.3
376,478 + ABZR87_RS01765 0.47 +1.1
376,530 - ABZR87_RS01765 0.53 +0.9
376,530 - ABZR87_RS01765 0.53 -0.9
376,682 + ABZR87_RS01765 0.69 -0.5

Or see this region's nucleotide sequence