Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01150

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01145 and ABZR87_RS01150 are separated by 26 nucleotidesABZR87_RS01150 and ABZR87_RS01155 are separated by 51 nucleotidesABZR87_RS01155 and ABZR87_RS01160 overlap by 4 nucleotides ABZR87_RS01145: ABZR87_RS01145 - glycolate oxidase subunit GlcE, at 238,382 to 239,515 _RS01145 ABZR87_RS01150: ABZR87_RS01150 - glycolate oxidase subunit GlcF, at 239,542 to 240,786 _RS01150 ABZR87_RS01155: ABZR87_RS01155 - CidA/LrgA family protein, at 240,838 to 241,215 _RS01155 ABZR87_RS01160: ABZR87_RS01160 - LrgB family protein, at 241,212 to 241,943 _RS01160 Position (kb) 239 240 241Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 238.568 kb on + strand, within ABZR87_RS01145at 238.568 kb on + strand, within ABZR87_RS01145at 238.568 kb on + strand, within ABZR87_RS01145at 238.569 kb on - strand, within ABZR87_RS01145at 239.501 kb on + strandat 239.501 kb on + strandat 239.502 kb on - strandat 239.502 kb on - strandat 239.502 kb on - strandat 239.527 kb on + strandat 239.527 kb on + strandat 239.528 kb on - strandat 239.653 kb on + strandat 239.653 kb on + strandat 239.654 kb on - strandat 239.654 kb on - strandat 239.698 kb on + strand, within ABZR87_RS01150at 239.698 kb on + strand, within ABZR87_RS01150at 239.698 kb on + strand, within ABZR87_RS01150at 239.698 kb on + strand, within ABZR87_RS01150at 239.699 kb on - strand, within ABZR87_RS01150at 239.699 kb on - strand, within ABZR87_RS01150at 239.699 kb on - strand, within ABZR87_RS01150at 239.812 kb on + strand, within ABZR87_RS01150at 239.813 kb on - strand, within ABZR87_RS01150at 239.813 kb on - strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.086 kb on + strand, within ABZR87_RS01150at 240.087 kb on - strand, within ABZR87_RS01150at 240.196 kb on + strand, within ABZR87_RS01150at 240.196 kb on + strand, within ABZR87_RS01150at 240.328 kb on + strand, within ABZR87_RS01150at 240.328 kb on + strand, within ABZR87_RS01150at 240.358 kb on + strand, within ABZR87_RS01150at 240.359 kb on - strand, within ABZR87_RS01150at 240.607 kb on + strand, within ABZR87_RS01150at 240.607 kb on + strand, within ABZR87_RS01150at 240.607 kb on + strand, within ABZR87_RS01150at 240.608 kb on - strand, within ABZR87_RS01150at 240.608 kb on - strand, within ABZR87_RS01150at 240.805 kb on + strandat 240.805 kb on + strandat 240.805 kb on + strandat 240.805 kb on + strandat 240.805 kb on + strandat 240.806 kb on - strandat 240.806 kb on - strandat 240.806 kb on - strandat 240.806 kb on - strandat 240.807 kb on + strandat 240.895 kb on + strand, within ABZR87_RS01155at 240.895 kb on + strand, within ABZR87_RS01155at 240.895 kb on + strand, within ABZR87_RS01155at 240.895 kb on + strand, within ABZR87_RS01155at 240.896 kb on - strand, within ABZR87_RS01155at 240.952 kb on + strand, within ABZR87_RS01155at 240.952 kb on + strand, within ABZR87_RS01155at 240.952 kb on + strand, within ABZR87_RS01155at 240.952 kb on + strand, within ABZR87_RS01155at 240.952 kb on + strand, within ABZR87_RS01155at 240.952 kb on + strand, within ABZR87_RS01155at 240.953 kb on - strand, within ABZR87_RS01155at 240.953 kb on - strand, within ABZR87_RS01155at 240.953 kb on - strand, within ABZR87_RS01155at 240.953 kb on - strand, within ABZR87_RS01155at 241.115 kb on + strand, within ABZR87_RS01155at 241.116 kb on - strand, within ABZR87_RS01155at 241.116 kb on - strand, within ABZR87_RS01155at 241.251 kb on + strandat 241.252 kb on - strandat 241.300 kb on - strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.411 kb on - strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.420 kb on - strand, within ABZR87_RS01160at 241.420 kb on - strand, within ABZR87_RS01160at 241.776 kb on + strand, within ABZR87_RS01160at 241.776 kb on + strand, within ABZR87_RS01160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
238,568 + ABZR87_RS01145 0.16 -1.0
238,568 + ABZR87_RS01145 0.16 -1.6
238,568 + ABZR87_RS01145 0.16 +0.7
238,569 - ABZR87_RS01145 0.16 -0.7
239,501 + +3.0
239,501 + -1.9
239,502 - +0.1
239,502 - +1.5
239,502 - -0.8
239,527 + -0.4
239,527 + -0.1
239,528 - -1.8
239,653 + -0.2
239,653 + -0.0
239,654 - -2.1
239,654 - -0.8
239,698 + ABZR87_RS01150 0.13 +0.1
239,698 + ABZR87_RS01150 0.13 +2.5
239,698 + ABZR87_RS01150 0.13 -1.2
239,698 + ABZR87_RS01150 0.13 -1.4
239,699 - ABZR87_RS01150 0.13 -1.3
239,699 - ABZR87_RS01150 0.13 +1.5
239,699 - ABZR87_RS01150 0.13 +0.4
239,812 + ABZR87_RS01150 0.22 -2.3
239,813 - ABZR87_RS01150 0.22 -0.1
239,813 - ABZR87_RS01150 0.22 +2.2
240,086 + ABZR87_RS01150 0.44 +0.1
240,086 + ABZR87_RS01150 0.44 +0.1
240,086 + ABZR87_RS01150 0.44 +0.5
240,086 + ABZR87_RS01150 0.44 -0.6
240,086 + ABZR87_RS01150 0.44 -1.1
240,087 - ABZR87_RS01150 0.44 +0.6
240,196 + ABZR87_RS01150 0.53 +0.8
240,196 + ABZR87_RS01150 0.53 -0.1
240,328 + ABZR87_RS01150 0.63 -0.1
240,328 + ABZR87_RS01150 0.63 +0.4
240,358 + ABZR87_RS01150 0.66 -0.7
240,359 - ABZR87_RS01150 0.66 -1.1
240,607 + ABZR87_RS01150 0.86 +1.9
240,607 + ABZR87_RS01150 0.86 +1.3
240,607 + ABZR87_RS01150 0.86 -0.7
240,608 - ABZR87_RS01150 0.86 -0.3
240,608 - ABZR87_RS01150 0.86 -0.5
240,805 + -0.5
240,805 + -0.7
240,805 + +1.2
240,805 + -0.9
240,805 + -1.3
240,806 - +1.5
240,806 - -1.5
240,806 - -0.3
240,806 - +1.4
240,807 + -0.4
240,895 + ABZR87_RS01155 0.15 +0.3
240,895 + ABZR87_RS01155 0.15 -0.4
240,895 + ABZR87_RS01155 0.15 -0.1
240,895 + ABZR87_RS01155 0.15 +4.5
240,896 - ABZR87_RS01155 0.15 +0.9
240,952 + ABZR87_RS01155 0.30 -0.4
240,952 + ABZR87_RS01155 0.30 +0.6
240,952 + ABZR87_RS01155 0.30 -0.1
240,952 + ABZR87_RS01155 0.30 +2.1
240,952 + ABZR87_RS01155 0.30 +1.3
240,952 + ABZR87_RS01155 0.30 -0.3
240,953 - ABZR87_RS01155 0.30 +1.7
240,953 - ABZR87_RS01155 0.30 +0.0
240,953 - ABZR87_RS01155 0.30 -2.1
240,953 - ABZR87_RS01155 0.30 -0.4
241,115 + ABZR87_RS01155 0.73 +1.3
241,116 - ABZR87_RS01155 0.74 +2.1
241,116 - ABZR87_RS01155 0.74 +2.3
241,251 + +0.6
241,252 - -1.3
241,300 - ABZR87_RS01160 0.12 -2.1
241,410 + ABZR87_RS01160 0.27 -1.3
241,410 + ABZR87_RS01160 0.27 -1.6
241,410 + ABZR87_RS01160 0.27 -0.9
241,410 + ABZR87_RS01160 0.27 +0.7
241,411 - ABZR87_RS01160 0.27 +0.3
241,419 + ABZR87_RS01160 0.28 +0.1
241,419 + ABZR87_RS01160 0.28 -0.8
241,419 + ABZR87_RS01160 0.28 -2.4
241,419 + ABZR87_RS01160 0.28 -0.8
241,420 - ABZR87_RS01160 0.28 +0.1
241,420 - ABZR87_RS01160 0.28 -0.5
241,776 + ABZR87_RS01160 0.77 +0.1
241,776 + ABZR87_RS01160 0.77 -2.2

Or see this region's nucleotide sequence