Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01065 and ABZR87_RS01070 are separated by 102 nucleotides ABZR87_RS01070 and ABZR87_RS01075 are separated by 261 nucleotides ABZR87_RS01075 and ABZR87_RS01080 are separated by 224 nucleotides
ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662
_RS01065
ABZR87_RS01070: ABZR87_RS01070 - hypothetical protein, at 214,765 to 215,211
_RS01070
ABZR87_RS01075: ABZR87_RS01075 - MprA protease, GlyGly-CTERM protein-sorting domain-containing form, at 215,473 to 217,122
_RS01075
ABZR87_RS01080: ABZR87_RS01080 - S8 family serine peptidase, at 217,347 to 219,401
_RS01080
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 214.669 kb on - strand at 214.669 kb on - strand at 214.669 kb on - strand at 214.734 kb on + strand at 214.734 kb on + strand at 214.915 kb on - strand, within ABZR87_RS01070 at 215.066 kb on + strand, within ABZR87_RS01070 at 215.066 kb on + strand, within ABZR87_RS01070 at 215.067 kb on - strand, within ABZR87_RS01070 at 215.067 kb on - strand, within ABZR87_RS01070 at 215.295 kb on + strand at 215.295 kb on + strand at 215.295 kb on + strand at 215.296 kb on - strand at 215.296 kb on - strand at 215.296 kb on - strand at 215.387 kb on + strand at 215.387 kb on + strand at 215.388 kb on - strand at 215.403 kb on + strand at 215.403 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.597 kb on - strand at 215.597 kb on - strand at 215.827 kb on + strand, within ABZR87_RS01075 at 215.827 kb on + strand, within ABZR87_RS01075 at 215.827 kb on + strand, within ABZR87_RS01075 at 215.828 kb on - strand, within ABZR87_RS01075 at 215.828 kb on - strand, within ABZR87_RS01075 at 215.828 kb on - strand, within ABZR87_RS01075 at 215.828 kb on - strand, within ABZR87_RS01075 at 215.828 kb on - strand, within ABZR87_RS01075 at 215.828 kb on - strand, within ABZR87_RS01075 at 215.828 kb on - strand, within ABZR87_RS01075 at 216.002 kb on - strand, within ABZR87_RS01075 at 216.043 kb on + strand, within ABZR87_RS01075 at 216.044 kb on - strand, within ABZR87_RS01075 at 216.044 kb on - strand, within ABZR87_RS01075 at 216.044 kb on - strand, within ABZR87_RS01075 at 216.584 kb on - strand, within ABZR87_RS01075 at 216.747 kb on + strand, within ABZR87_RS01075 at 216.748 kb on - strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.938 kb on - strand, within ABZR87_RS01075 at 216.938 kb on - strand, within ABZR87_RS01075 at 216.938 kb on - strand, within ABZR87_RS01075 at 217.014 kb on + strand at 217.088 kb on + strand at 217.131 kb on + strand at 217.131 kb on + strand at 217.131 kb on + strand at 217.132 kb on - strand at 217.132 kb on - strand at 217.132 kb on - strand at 217.132 kb on - strand at 217.221 kb on + strand at 217.222 kb on - strand at 217.222 kb on - strand at 217.243 kb on + strand at 217.244 kb on - strand at 217.244 kb on - strand at 217.252 kb on + strand at 217.252 kb on + strand at 217.253 kb on - strand at 217.256 kb on + strand at 217.407 kb on + strand at 217.407 kb on + strand at 217.407 kb on + strand at 217.408 kb on - strand at 217.408 kb on - strand at 217.408 kb on - strand at 217.487 kb on + strand at 217.487 kb on + strand at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.603 kb on - strand, within ABZR87_RS01080 at 217.603 kb on - strand, within ABZR87_RS01080 at 217.646 kb on + strand, within ABZR87_RS01080 at 217.713 kb on + strand, within ABZR87_RS01080 at 217.713 kb on + strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.844 kb on + strand, within ABZR87_RS01080 at 217.845 kb on - strand, within ABZR87_RS01080 at 217.845 kb on - strand, within ABZR87_RS01080 at 217.862 kb on + strand, within ABZR87_RS01080 at 217.862 kb on + strand, within ABZR87_RS01080 at 217.862 kb on + strand, within ABZR87_RS01080 at 217.947 kb on - strand, within ABZR87_RS01080 at 217.984 kb on - strand, within ABZR87_RS01080 at 218.075 kb on + strand, within ABZR87_RS01080 at 218.075 kb on + strand, within ABZR87_RS01080 at 218.076 kb on - strand, within ABZR87_RS01080 at 218.076 kb on - strand, within ABZR87_RS01080 at 218.076 kb on - strand, within ABZR87_RS01080
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 214,669 - +0.6 214,669 - -0.6 214,669 - -0.6 214,734 + +1.4 214,734 + -0.3 214,915 - ABZR87_RS01070 0.34 -1.3 215,066 + ABZR87_RS01070 0.67 -0.5 215,066 + ABZR87_RS01070 0.67 -1.8 215,067 - ABZR87_RS01070 0.68 +0.5 215,067 - ABZR87_RS01070 0.68 +0.2 215,295 + +0.1 215,295 + +0.1 215,295 + -1.0 215,296 - -0.3 215,296 - +1.0 215,296 - +12.7 215,387 + -2.1 215,387 + +1.4 215,388 - -0.3 215,403 + -0.1 215,403 + -1.4 215,596 + -0.1 215,596 + +1.0 215,596 + -1.5 215,596 + -0.1 215,596 + -1.6 215,596 + -1.9 215,597 - -2.7 215,597 - -0.0 215,827 + ABZR87_RS01075 0.21 +0.9 215,827 + ABZR87_RS01075 0.21 -1.6 215,827 + ABZR87_RS01075 0.21 -0.2 215,828 - ABZR87_RS01075 0.22 -2.1 215,828 - ABZR87_RS01075 0.22 -1.7 215,828 - ABZR87_RS01075 0.22 -1.1 215,828 - ABZR87_RS01075 0.22 +0.6 215,828 - ABZR87_RS01075 0.22 +1.5 215,828 - ABZR87_RS01075 0.22 -2.4 215,828 - ABZR87_RS01075 0.22 -0.3 216,002 - ABZR87_RS01075 0.32 -2.8 216,043 + ABZR87_RS01075 0.35 +4.5 216,044 - ABZR87_RS01075 0.35 +2.2 216,044 - ABZR87_RS01075 0.35 -0.0 216,044 - ABZR87_RS01075 0.35 +0.8 216,584 - ABZR87_RS01075 0.67 -2.2 216,747 + ABZR87_RS01075 0.77 -0.3 216,748 - ABZR87_RS01075 0.77 -0.3 216,937 + ABZR87_RS01075 0.89 -0.8 216,937 + ABZR87_RS01075 0.89 -3.3 216,937 + ABZR87_RS01075 0.89 +0.4 216,937 + ABZR87_RS01075 0.89 -2.5 216,938 - ABZR87_RS01075 0.89 +0.9 216,938 - ABZR87_RS01075 0.89 -1.9 216,938 - ABZR87_RS01075 0.89 +0.2 217,014 + +0.6 217,088 + -0.4 217,131 + -0.7 217,131 + -1.5 217,131 + -1.2 217,132 - -0.8 217,132 - +1.0 217,132 - +1.4 217,132 - +0.8 217,221 + -1.6 217,222 - +0.4 217,222 - +0.6 217,243 + -1.3 217,244 - +0.7 217,244 - +2.2 217,252 + +0.4 217,252 + -1.9 217,253 - +1.1 217,256 + -0.6 217,407 + +0.8 217,407 + -2.7 217,407 + -0.4 217,408 - +0.0 217,408 - -2.0 217,408 - +0.2 217,487 + -1.3 217,487 + -2.0 217,602 + ABZR87_RS01080 0.12 +1.2 217,602 + ABZR87_RS01080 0.12 -0.3 217,602 + ABZR87_RS01080 0.12 +0.2 217,602 + ABZR87_RS01080 0.12 +0.5 217,602 + ABZR87_RS01080 0.12 -0.4 217,603 - ABZR87_RS01080 0.12 +0.3 217,603 - ABZR87_RS01080 0.12 -1.6 217,646 + ABZR87_RS01080 0.15 +3.1 217,713 + ABZR87_RS01080 0.18 -0.2 217,713 + ABZR87_RS01080 0.18 +0.0 217,714 - ABZR87_RS01080 0.18 -1.6 217,714 - ABZR87_RS01080 0.18 -0.4 217,714 - ABZR87_RS01080 0.18 +1.0 217,714 - ABZR87_RS01080 0.18 -0.6 217,844 + ABZR87_RS01080 0.24 -0.4 217,845 - ABZR87_RS01080 0.24 +1.7 217,845 - ABZR87_RS01080 0.24 +0.7 217,862 + ABZR87_RS01080 0.25 +0.6 217,862 + ABZR87_RS01080 0.25 -1.6 217,862 + ABZR87_RS01080 0.25 +0.5 217,947 - ABZR87_RS01080 0.29 -1.8 217,984 - ABZR87_RS01080 0.31 -1.5 218,075 + ABZR87_RS01080 0.35 +0.4 218,075 + ABZR87_RS01080 0.35 +0.8 218,076 - ABZR87_RS01080 0.35 +0.9 218,076 - ABZR87_RS01080 0.35 -1.7 218,076 - ABZR87_RS01080 0.35 -0.7
Or see this region's nucleotide sequence