Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5055

Experiment: apoplastic; Green bean; 13 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5054 and Psyr_5055 are separated by 119 nucleotidesPsyr_5055 and Psyr_5056 are separated by 54 nucleotides Psyr_5054: Psyr_5054 - Protein of unknown function UPF0187, at 5,996,327 to 5,997,214 _5054 Psyr_5055: Psyr_5055 - YeeE/YedE, at 5,997,334 to 5,998,545 _5055 Psyr_5056: Psyr_5056 - transcriptional regulator, GntR family, at 5,998,600 to 6,000,162 _5056 Position (kb) 5997 5998 5999Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5996.589 kb on + strand, within Psyr_5054at 5996.589 kb on + strand, within Psyr_5054at 5996.589 kb on + strand, within Psyr_5054at 5996.589 kb on + strand, within Psyr_5054at 5996.589 kb on + strand, within Psyr_5054at 5996.590 kb on - strand, within Psyr_5054at 5996.590 kb on - strand, within Psyr_5054at 5996.596 kb on - strand, within Psyr_5054at 5996.608 kb on + strand, within Psyr_5054at 5996.608 kb on + strand, within Psyr_5054at 5996.609 kb on - strand, within Psyr_5054at 5996.617 kb on + strand, within Psyr_5054at 5996.618 kb on - strand, within Psyr_5054at 5996.734 kb on + strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.735 kb on - strand, within Psyr_5054at 5996.859 kb on + strand, within Psyr_5054at 5996.859 kb on + strand, within Psyr_5054at 5996.859 kb on + strand, within Psyr_5054at 5996.860 kb on - strand, within Psyr_5054at 5996.860 kb on - strand, within Psyr_5054at 5997.003 kb on + strand, within Psyr_5054at 5997.003 kb on + strand, within Psyr_5054at 5997.004 kb on - strand, within Psyr_5054at 5997.004 kb on - strand, within Psyr_5054at 5997.004 kb on - strand, within Psyr_5054at 5997.004 kb on - strand, within Psyr_5054at 5997.096 kb on + strand, within Psyr_5054at 5997.096 kb on + strand, within Psyr_5054at 5997.097 kb on - strand, within Psyr_5054at 5997.097 kb on - strand, within Psyr_5054at 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.158 kb on + strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.159 kb on - strandat 5997.163 kb on - strandat 5997.163 kb on - strandat 5997.236 kb on + strandat 5997.249 kb on + strandat 5997.249 kb on + strandat 5997.260 kb on - strandat 5997.312 kb on + strandat 5997.417 kb on - strandat 5997.473 kb on + strand, within Psyr_5055at 5997.473 kb on + strand, within Psyr_5055at 5997.474 kb on - strand, within Psyr_5055at 5997.809 kb on + strand, within Psyr_5055at 5997.809 kb on + strand, within Psyr_5055at 5998.388 kb on + strand, within Psyr_5055at 5998.388 kb on + strand, within Psyr_5055at 5998.389 kb on - strand, within Psyr_5055at 5998.389 kb on - strand, within Psyr_5055at 5998.389 kb on - strand, within Psyr_5055at 5998.531 kb on - strandat 5998.550 kb on - strandat 5998.564 kb on + strandat 5998.564 kb on + strandat 5998.571 kb on - strandat 5998.581 kb on + strandat 5998.582 kb on - strandat 5998.582 kb on - strandat 5998.583 kb on + strandat 5998.583 kb on + strandat 5998.583 kb on + strandat 5998.583 kb on + strandat 5998.584 kb on - strandat 5998.584 kb on - strandat 5998.584 kb on - strandat 5998.584 kb on - strandat 5998.584 kb on - strandat 5998.676 kb on - strandat 5998.725 kb on - strandat 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.924 kb on + strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.925 kb on - strand, within Psyr_5056at 5998.982 kb on - strand, within Psyr_5056at 5999.054 kb on + strand, within Psyr_5056at 5999.054 kb on + strand, within Psyr_5056at 5999.102 kb on + strand, within Psyr_5056at 5999.102 kb on + strand, within Psyr_5056at 5999.102 kb on + strand, within Psyr_5056at 5999.102 kb on + strand, within Psyr_5056at 5999.177 kb on + strand, within Psyr_5056at 5999.178 kb on - strand, within Psyr_5056at 5999.288 kb on + strand, within Psyr_5056at 5999.288 kb on + strand, within Psyr_5056at 5999.289 kb on - strand, within Psyr_5056at 5999.289 kb on - strand, within Psyr_5056at 5999.289 kb on - strand, within Psyr_5056at 5999.537 kb on + strand, within Psyr_5056at 5999.538 kb on - strand, within Psyr_5056at 5999.538 kb on - strand, within Psyr_5056

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days
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5,996,589 + Psyr_5054 0.30 -3.6
5,996,589 + Psyr_5054 0.30 +0.3
5,996,589 + Psyr_5054 0.30 -0.1
5,996,589 + Psyr_5054 0.30 -1.9
5,996,589 + Psyr_5054 0.30 +2.1
5,996,590 - Psyr_5054 0.30 +1.6
5,996,590 - Psyr_5054 0.30 +1.3
5,996,596 - Psyr_5054 0.30 +2.2
5,996,608 + Psyr_5054 0.32 +0.7
5,996,608 + Psyr_5054 0.32 -2.6
5,996,609 - Psyr_5054 0.32 +0.0
5,996,617 + Psyr_5054 0.33 -0.4
5,996,618 - Psyr_5054 0.33 +0.9
5,996,734 + Psyr_5054 0.46 +2.1
5,996,735 - Psyr_5054 0.46 +1.9
5,996,735 - Psyr_5054 0.46 +3.9
5,996,735 - Psyr_5054 0.46 -1.1
5,996,735 - Psyr_5054 0.46 +3.0
5,996,735 - Psyr_5054 0.46 +0.4
5,996,859 + Psyr_5054 0.60 -2.1
5,996,859 + Psyr_5054 0.60 -1.6
5,996,859 + Psyr_5054 0.60 +1.2
5,996,860 - Psyr_5054 0.60 +4.6
5,996,860 - Psyr_5054 0.60 +1.9
5,997,003 + Psyr_5054 0.76 +2.8
5,997,003 + Psyr_5054 0.76 +1.0
5,997,004 - Psyr_5054 0.76 -0.6
5,997,004 - Psyr_5054 0.76 +1.9
5,997,004 - Psyr_5054 0.76 -0.9
5,997,004 - Psyr_5054 0.76 +0.7
5,997,096 + Psyr_5054 0.87 +1.4
5,997,096 + Psyr_5054 0.87 -1.7
5,997,097 - Psyr_5054 0.87 -2.9
5,997,097 - Psyr_5054 0.87 -1.1
5,997,158 + +3.0
5,997,158 + +0.1
5,997,158 + -2.3
5,997,158 + -2.6
5,997,158 + -1.1
5,997,158 + -1.1
5,997,158 + +2.0
5,997,158 + -2.3
5,997,158 + +2.5
5,997,158 + -2.5
5,997,158 + +1.6
5,997,158 + +0.9
5,997,159 - -2.0
5,997,159 - -0.7
5,997,159 - -0.5
5,997,159 - -1.1
5,997,159 - +0.1
5,997,159 - +1.4
5,997,159 - +1.4
5,997,159 - -1.1
5,997,159 - -1.1
5,997,159 - -0.7
5,997,159 - -1.7
5,997,159 - -2.6
5,997,159 - -0.0
5,997,159 - -3.1
5,997,159 - -1.5
5,997,159 - -1.7
5,997,159 - -0.7
5,997,163 - +1.3
5,997,163 - -0.1
5,997,236 + +1.3
5,997,249 + +1.6
5,997,249 + +4.4
5,997,260 - +1.7
5,997,312 + -1.1
5,997,417 - -0.6
5,997,473 + Psyr_5055 0.11 -0.9
5,997,473 + Psyr_5055 0.11 +0.4
5,997,474 - Psyr_5055 0.12 -1.8
5,997,809 + Psyr_5055 0.39 -0.7
5,997,809 + Psyr_5055 0.39 -0.8
5,998,388 + Psyr_5055 0.87 +1.4
5,998,388 + Psyr_5055 0.87 +1.1
5,998,389 - Psyr_5055 0.87 +3.0
5,998,389 - Psyr_5055 0.87 -2.1
5,998,389 - Psyr_5055 0.87 +1.5
5,998,531 - +1.4
5,998,550 - -1.1
5,998,564 + -2.2
5,998,564 + -1.0
5,998,571 - -1.9
5,998,581 + -2.1
5,998,582 - +3.8
5,998,582 - -1.4
5,998,583 + -0.2
5,998,583 + +1.5
5,998,583 + -0.7
5,998,583 + -0.4
5,998,584 - -2.1
5,998,584 - -0.2
5,998,584 - -0.9
5,998,584 - -0.1
5,998,584 - -3.1
5,998,676 - +1.4
5,998,725 - +1.6
5,998,924 + Psyr_5056 0.21 -1.3
5,998,924 + Psyr_5056 0.21 -1.1
5,998,924 + Psyr_5056 0.21 -0.1
5,998,924 + Psyr_5056 0.21 -2.9
5,998,924 + Psyr_5056 0.21 -2.7
5,998,924 + Psyr_5056 0.21 +1.2
5,998,924 + Psyr_5056 0.21 +1.2
5,998,924 + Psyr_5056 0.21 -1.1
5,998,924 + Psyr_5056 0.21 -1.5
5,998,924 + Psyr_5056 0.21 -1.6
5,998,924 + Psyr_5056 0.21 -2.9
5,998,924 + Psyr_5056 0.21 -1.5
5,998,924 + Psyr_5056 0.21 +0.7
5,998,924 + Psyr_5056 0.21 +0.9
5,998,924 + Psyr_5056 0.21 -0.0
5,998,924 + Psyr_5056 0.21 -1.9
5,998,924 + Psyr_5056 0.21 -2.7
5,998,924 + Psyr_5056 0.21 -0.7
5,998,924 + Psyr_5056 0.21 -0.5
5,998,924 + Psyr_5056 0.21 -0.9
5,998,924 + Psyr_5056 0.21 -1.6
5,998,924 + Psyr_5056 0.21 +1.7
5,998,924 + Psyr_5056 0.21 -0.1
5,998,924 + Psyr_5056 0.21 +1.7
5,998,925 - Psyr_5056 0.21 +1.8
5,998,925 - Psyr_5056 0.21 +1.3
5,998,925 - Psyr_5056 0.21 -4.0
5,998,925 - Psyr_5056 0.21 +1.2
5,998,925 - Psyr_5056 0.21 -0.7
5,998,925 - Psyr_5056 0.21 -1.9
5,998,925 - Psyr_5056 0.21 +2.4
5,998,925 - Psyr_5056 0.21 +0.9
5,998,925 - Psyr_5056 0.21 +2.1
5,998,925 - Psyr_5056 0.21 +2.1
5,998,925 - Psyr_5056 0.21 -1.1
5,998,925 - Psyr_5056 0.21 -1.5
5,998,925 - Psyr_5056 0.21 -0.6
5,998,925 - Psyr_5056 0.21 -0.1
5,998,982 - Psyr_5056 0.24 -2.3
5,999,054 + Psyr_5056 0.29 +4.1
5,999,054 + Psyr_5056 0.29 +0.2
5,999,102 + Psyr_5056 0.32 -0.1
5,999,102 + Psyr_5056 0.32 -0.7
5,999,102 + Psyr_5056 0.32 -2.7
5,999,102 + Psyr_5056 0.32 -0.1
5,999,177 + Psyr_5056 0.37 -1.9
5,999,178 - Psyr_5056 0.37 -1.7
5,999,288 + Psyr_5056 0.44 -2.3
5,999,288 + Psyr_5056 0.44 +2.4
5,999,289 - Psyr_5056 0.44 -1.7
5,999,289 - Psyr_5056 0.44 -0.8
5,999,289 - Psyr_5056 0.44 -0.7
5,999,537 + Psyr_5056 0.60 -1.9
5,999,538 - Psyr_5056 0.60 +0.1
5,999,538 - Psyr_5056 0.60 +1.9

Or see this region's nucleotide sequence