Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4899

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
5,809,488	+		Psyr_4898	0.37	-2.8
5,809,489	-		Psyr_4898	0.37	-2.3
5,809,517	-		Psyr_4898	0.40	-1.0
5,809,535	-		Psyr_4898	0.41	-0.7
5,809,535	-		Psyr_4898	0.41	-2.3
5,809,563	+		Psyr_4898	0.43	-1.4
5,809,563	+		Psyr_4898	0.43	-0.6
5,809,564	-		Psyr_4898	0.43	-0.7
5,809,564	-		Psyr_4898	0.43	+2.6
5,809,564	-		Psyr_4898	0.43	-2.1
5,809,564	-		Psyr_4898	0.43	-0.7
5,809,564	-		Psyr_4898	0.43	-2.3
5,809,600	-		Psyr_4898	0.46	-1.4
5,809,795	-		Psyr_4898	0.63	-3.5
5,809,893	+		Psyr_4898	0.71	-0.5
5,809,893	+		Psyr_4898	0.71	+1.1
5,809,893	+		Psyr_4898	0.71	+0.9
5,809,894	-		Psyr_4898	0.71	-0.7
5,809,894	-		Psyr_4898	0.71	-2.1
5,809,913	+		Psyr_4898	0.72	-0.1
5,809,913	+		Psyr_4898	0.72	-1.9
5,809,913	+		Psyr_4898	0.72	-0.5
5,809,913	+		Psyr_4898	0.72	+1.1
5,809,914	-		Psyr_4898	0.73	-0.7
5,809,914	-		Psyr_4898	0.73	-0.7
5,809,914	-		Psyr_4898	0.73	+2.3
5,809,914	-		Psyr_4898	0.73	-2.3
5,809,914	-		Psyr_4898	0.73	+0.9
5,810,019	+		Psyr_4898	0.81	-2.3
5,810,046	+		Psyr_4898	0.84	-3.4
5,810,047	-		Psyr_4898	0.84	-1.9
5,810,097	-		Psyr_4898	0.88	-1.1
5,810,134	-				+1.5
5,810,136	+				-0.1
5,810,136	+				-2.7
5,810,136	+				-2.3
5,810,136	+				+0.5
5,810,137	-				-2.6
5,810,137	-				-1.4
5,810,137	-				-1.1
5,810,137	-				+2.9
5,810,137	-				+0.5
5,810,220	+				-0.7
5,810,220	+				-1.9
5,810,221	-				-1.1
5,810,281	-				+2.0
5,810,285	+				+1.6
5,810,285	+				-0.1
5,810,285	+				+2.8
5,810,285	+				+1.3
5,810,285	+				+0.1
5,810,286	-				+0.9
5,810,286	-				+8.0
5,810,286	-				-0.4
5,810,286	-				-2.1
5,810,286	-				-0.4
5,810,286	-				-0.1
5,810,286	-				+0.4
5,810,294	-				+1.8
5,810,294	-				+3.0
5,810,321	+				+1.1
5,810,321	+				-1.4
5,810,321	+				-1.1
5,810,321	+				+0.4
5,810,321	+				-0.4
5,810,322	-				+0.2
5,810,322	-				+1.9
5,810,322	-				-0.7
5,810,322	-				-1.1
5,810,322	-				-1.9
5,810,322	-				+2.2
5,810,322	-				-2.6
5,810,322	-				+0.8
5,810,322	-				-0.4
5,810,322	-				+1.0
5,810,325	+				-1.4
5,810,325	+				-0.6
5,810,325	+				+1.4
5,810,325	+				-2.6
5,810,325	+				-0.7
5,810,325	+				-0.5
5,810,325	+				+2.2
5,810,325	+				+0.5
5,810,325	+				+1.9
5,810,325	+				+0.9
5,810,326	-				+1.0
5,810,326	-				-3.2
5,810,326	-				+2.0
5,810,326	-				+2.2
5,810,326	-				-1.3
5,810,326	-				-0.7
5,810,326	-				-1.7
5,810,326	-				+1.2
5,810,326	-				-1.7
5,810,326	-				+0.9
5,810,326	-				+0.3
5,810,326	-				-1.5
5,810,339	+				-2.6
5,810,339	+				-2.1
5,810,340	-				-2.1
5,810,340	-				+0.0
5,810,358	-				-1.7
5,810,461	-				-0.8
5,810,655	+		Psyr_4899	0.12	+0.7
5,810,655	+		Psyr_4899	0.12	-0.7
5,810,655	+		Psyr_4899	0.12	+0.6
5,810,655	+		Psyr_4899	0.12	-0.7
5,810,655	+		Psyr_4899	0.12	+0.5
5,810,655	+		Psyr_4899	0.12	+1.2
5,810,655	+		Psyr_4899	0.12	-2.3
5,810,655	+		Psyr_4899	0.12	+1.9
5,810,655	+		Psyr_4899	0.12	+3.1
5,810,656	-		Psyr_4899	0.12	+0.5
5,810,656	-		Psyr_4899	0.12	+2.2
5,810,656	-		Psyr_4899	0.12	+1.5
5,810,656	-		Psyr_4899	0.12	+0.7
5,810,656	-		Psyr_4899	0.12	+1.4
5,810,656	-		Psyr_4899	0.12	+1.5
5,810,693	-		Psyr_4899	0.14	+1.2
5,810,702	+		Psyr_4899	0.15	+0.9
5,810,724	+		Psyr_4899	0.16	-0.7
5,810,724	+		Psyr_4899	0.16	-1.9
5,810,725	-		Psyr_4899	0.16	-2.5
5,810,725	-		Psyr_4899	0.16	+1.9
5,810,725	-		Psyr_4899	0.16	+1.4
5,810,725	-		Psyr_4899	0.16	+1.5
5,810,725	-		Psyr_4899	0.16	+1.9
5,810,725	-		Psyr_4899	0.16	+2.6
5,810,725	-		Psyr_4899	0.16	-1.1
5,810,725	-		Psyr_4899	0.16	+1.2
5,810,725	-		Psyr_4899	0.16	+3.5
5,810,725	-		Psyr_4899	0.16	+0.9
5,810,725	-		Psyr_4899	0.16	-0.1
5,810,725	-		Psyr_4899	0.16	+1.3
5,810,739	+		Psyr_4899	0.17	+3.3
5,810,775	+		Psyr_4899	0.19	-0.7
5,810,775	+		Psyr_4899	0.19	+0.2
5,810,776	-		Psyr_4899	0.19	-0.7
5,810,787	+		Psyr_4899	0.20	-0.1
5,810,787	+		Psyr_4899	0.20	-2.8
5,810,787	+		Psyr_4899	0.20	+0.1
5,810,787	+		Psyr_4899	0.20	+1.6
5,810,787	+		Psyr_4899	0.20	-2.4
5,810,788	-		Psyr_4899	0.20	-0.4
5,810,788	-		Psyr_4899	0.20	-1.1
5,810,788	-		Psyr_4899	0.20	+0.7
5,810,788	-		Psyr_4899	0.20	+1.6
5,810,890	-		Psyr_4899	0.26	+0.9
5,810,919	+		Psyr_4899	0.28	-2.6
5,810,919	+		Psyr_4899	0.28	-1.6
5,810,919	+		Psyr_4899	0.28	+0.6
5,810,920	-		Psyr_4899	0.28	+2.5
5,810,920	-		Psyr_4899	0.28	-1.1
5,810,997	+		Psyr_4899	0.32	-1.2
5,810,998	-		Psyr_4899	0.32	-1.3
5,810,998	-		Psyr_4899	0.32	+4.4
5,811,030	+		Psyr_4899	0.34	-1.1
5,811,030	+		Psyr_4899	0.34	+2.0
5,811,030	+		Psyr_4899	0.34	+1.8
5,811,030	+		Psyr_4899	0.34	+2.9
5,811,030	+		Psyr_4899	0.34	+2.0
5,811,030	+		Psyr_4899	0.34	+1.3
5,811,030	+		Psyr_4899	0.34	-1.1
5,811,030	+		Psyr_4899	0.34	+0.9
5,811,031	-		Psyr_4899	0.34	+1.6
5,811,031	-		Psyr_4899	0.34	-1.1
5,811,031	-		Psyr_4899	0.34	-1.7
5,811,031	-		Psyr_4899	0.34	+0.2
5,811,031	-		Psyr_4899	0.34	+3.2
5,811,031	-		Psyr_4899	0.34	+2.0
5,811,031	-		Psyr_4899	0.34	+0.9
5,811,031	-		Psyr_4899	0.34	+0.3
5,811,031	-		Psyr_4899	0.34	-1.1
5,811,031	-		Psyr_4899	0.34	-1.7
5,811,031	-		Psyr_4899	0.34	+2.5
5,811,031	-		Psyr_4899	0.34	-1.3
5,811,031	-		Psyr_4899	0.34	-2.3
5,811,203	+		Psyr_4899	0.45	-1.7
5,811,203	+		Psyr_4899	0.45	-1.4
5,811,204	-		Psyr_4899	0.45	+2.1
5,811,254	+		Psyr_4899	0.48	+1.9
5,811,441	+		Psyr_4899	0.59	-0.7
5,811,441	+		Psyr_4899	0.59	+1.9
5,811,441	+		Psyr_4899	0.59	+0.3
5,811,442	-		Psyr_4899	0.59	+1.3
5,811,442	-		Psyr_4899	0.59	+4.1
5,811,442	-		Psyr_4899	0.59	+1.3
5,811,442	-		Psyr_4899	0.59	-1.9
5,811,442	-		Psyr_4899	0.59	+1.6
5,811,442	-		Psyr_4899	0.59	+2.0
5,811,442	-		Psyr_4899	0.59	-2.8
5,811,442	-		Psyr_4899	0.59	-1.7
5,811,442	-		Psyr_4899	0.59	+2.8
5,811,628	+		Psyr_4899	0.70	-0.6
5,811,628	+		Psyr_4899	0.70	+1.4
5,811,628	+		Psyr_4899	0.70	-1.1
5,811,628	+		Psyr_4899	0.70	+1.9
5,811,628	+		Psyr_4899	0.70	-1.2
5,811,628	+		Psyr_4899	0.70	-0.7
5,811,629	-		Psyr_4899	0.70	+2.7
5,811,629	-		Psyr_4899	0.70	-1.2
5,811,629	-		Psyr_4899	0.70	+2.4
5,811,629	-		Psyr_4899	0.70	-1.1
5,811,630	+		Psyr_4899	0.70	-1.6
5,811,630	+		Psyr_4899	0.70	-0.9
5,811,630	+		Psyr_4899	0.70	+0.5
5,811,630	+		Psyr_4899	0.70	-0.5
5,811,630	+		Psyr_4899	0.70	-0.9
5,811,630	+		Psyr_4899	0.70	+3.6
5,811,630	+		Psyr_4899	0.70	+0.9
5,811,630	+		Psyr_4899	0.70	-0.1
5,811,630	+		Psyr_4899	0.70	-0.9
5,811,631	-		Psyr_4899	0.71	+1.3
5,811,631	-		Psyr_4899	0.71	-2.3
5,811,631	-		Psyr_4899	0.71	+1.5
5,811,631	-		Psyr_4899	0.71	+0.4
5,811,697	+		Psyr_4899	0.74	+2.0
5,811,697	+		Psyr_4899	0.74	-0.1
5,811,697	+		Psyr_4899	0.74	-2.0
5,811,698	-		Psyr_4899	0.75	-2.4
5,811,698	-		Psyr_4899	0.75	+1.6
5,811,698	-		Psyr_4899	0.75	-2.1
5,811,698	-		Psyr_4899	0.75	+2.5
5,811,699	+		Psyr_4899	0.75	+0.4
5,811,699	+		Psyr_4899	0.75	+1.3
5,811,699	+		Psyr_4899	0.75	-1.3
5,811,699	+		Psyr_4899	0.75	-3.4
5,811,700	-		Psyr_4899	0.75	-1.3
5,811,700	-		Psyr_4899	0.75	+1.9
5,811,700	-		Psyr_4899	0.75	+0.3
5,811,837	+		Psyr_4899	0.83	+2.8
5,811,837	+		Psyr_4899	0.83	-0.1
5,811,837	+		Psyr_4899	0.83	-1.7
5,811,837	+		Psyr_4899	0.83	-1.9
5,811,837	+		Psyr_4899	0.83	-0.6
5,811,838	-		Psyr_4899	0.83	+0.1
5,811,838	-		Psyr_4899	0.83	-1.1
5,811,838	-		Psyr_4899	0.83	+2.3
5,811,838	-		Psyr_4899	0.83	-0.3
5,811,838	-		Psyr_4899	0.83	-0.3
5,811,838	-		Psyr_4899	0.83	+0.9
5,811,838	-		Psyr_4899	0.83	-2.8
5,811,941	-		Psyr_4899	0.89	-0.3
5,812,121	+				-3.1
5,812,121	+				-2.3
5,812,122	-				+3.6
5,812,122	-				-0.4
5,812,122	-				+0.9
5,812,122	-				-1.1
5,812,123	+				+0.9
5,812,123	+				-2.3
5,812,123	+				-1.0
5,812,123	+				-1.9
5,812,123	+				-1.4
5,812,123	+				-1.1
5,812,123	+				+0.7
5,812,123	+				-1.9
5,812,123	+				+2.3
5,812,123	+				-1.4
5,812,123	+				+1.5
5,812,124	-				-0.2
5,812,124	-				+2.3
5,812,124	-				-1.9
5,812,124	-				+1.0
5,812,124	-				+1.3
5,812,124	-				-0.7
5,812,124	-				-1.1
5,812,124	-				+0.9
5,812,124	-				-0.6
5,812,124	-				-1.1
5,812,124	-				+1.6
5,812,127	+				-0.1
5,812,220	+				+1.3
5,812,262	+				-0.1
5,812,263	-				+3.9
5,812,263	-				-3.4
5,812,282	+				-0.7
5,812,282	+				+0.6
5,812,282	+				+1.6
5,812,282	+				+3.2
5,812,282	+				-0.7
5,812,283	-				-0.4
5,812,283	-				-1.7
5,812,283	-				-0.7
5,812,283	-				-2.8
5,812,283	-				-2.8
5,812,283	-				+1.9
5,812,283	-				+1.7
5,812,283	-				-1.4
5,812,283	-				-1.7
5,812,283	-				-0.6
5,812,294	+				+2.3
5,812,295	-				+4.1
5,812,295	-				-0.3
5,812,295	-				+0.7
5,812,295	-				-0.7
5,812,295	-				-2.3
5,812,305	-				+1.2
5,812,306	-				+2.2
5,812,306	-				-1.6
5,812,308	+				-2.7
5,812,309	-				-0.1
5,812,312	+				-2.1
5,812,313	-				+1.9
5,812,349	+				-2.1
5,812,350	-				-1.1
5,812,392	+				-0.3
5,812,392	+				-0.1
5,812,393	-				+2.5
5,812,393	-				+2.0
5,812,393	-				-2.8
5,812,446	+				-0.7
5,812,446	+				-2.3
5,812,446	+				+0.9
5,812,446	+				-1.9
5,812,447	-				-1.1
5,812,447	-				-1.4
5,812,448	+				+2.7
5,812,448	+				-1.4
5,812,448	+				-0.1
5,812,493	-				-1.3
5,812,576	-				-1.3
5,812,577	+				+3.4
5,812,577	+				-1.8
5,812,577	+				+0.9
5,812,577	+				-0.8
5,812,577	+				+1.0
5,812,577	+				+1.1
5,812,578	-				+4.1
5,812,578	-				-0.7
5,812,578	-				+1.3
5,812,578	-				+2.3
5,812,651	+				-2.4
5,812,652	-				-2.1
5,812,652	-				+1.3
5,812,929	+		Psyr_4900	0.14	-0.7
5,812,929	+		Psyr_4900	0.14	+5.2
5,812,930	-		Psyr_4900	0.14	+0.9
5,812,930	-		Psyr_4900	0.14	-3.1
5,812,930	-		Psyr_4900	0.14	-0.4