Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4865

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
5,772,881	+		Psyr_4864	0.39	-2.4
5,772,881	+		Psyr_4864	0.39	-2.5
5,772,881	+		Psyr_4864	0.39	-0.7
5,772,881	+		Psyr_4864	0.39	-0.7
5,772,881	+		Psyr_4864	0.39	-3.0
5,772,881	+		Psyr_4864	0.39	-1.5
5,772,882	-		Psyr_4864	0.39	-2.5
5,772,882	-		Psyr_4864	0.39	-0.7
5,772,882	-		Psyr_4864	0.39	-1.2
5,772,882	-		Psyr_4864	0.39	+0.5
5,772,882	-		Psyr_4864	0.39	-2.9
5,772,882	-		Psyr_4864	0.39	-2.0
5,772,899	+		Psyr_4864	0.41	+0.6
5,772,899	+		Psyr_4864	0.41	+0.6
5,772,899	+		Psyr_4864	0.41	+1.8
5,772,900	-		Psyr_4864	0.41	-3.9
5,772,900	-		Psyr_4864	0.41	+1.8
5,772,900	-		Psyr_4864	0.41	+0.8
5,772,908	+		Psyr_4864	0.41	+1.3
5,772,908	+		Psyr_4864	0.41	-0.4
5,772,909	-		Psyr_4864	0.42	+0.2
5,772,909	-		Psyr_4864	0.42	-1.2
5,772,909	-		Psyr_4864	0.42	-1.4
5,772,909	-		Psyr_4864	0.42	-0.7
5,772,948	-		Psyr_4864	0.45	+0.6
5,772,948	-		Psyr_4864	0.45	+2.3
5,772,986	+		Psyr_4864	0.49	-0.2
5,772,986	+		Psyr_4864	0.49	+3.2
5,772,986	+		Psyr_4864	0.49	-3.1
5,772,986	+		Psyr_4864	0.49	-1.6
5,772,986	+		Psyr_4864	0.49	-1.6
5,772,987	-		Psyr_4864	0.49	-0.2
5,772,987	-		Psyr_4864	0.49	+1.8
5,772,987	-		Psyr_4864	0.49	+3.2
5,772,987	-		Psyr_4864	0.49	-0.3
5,772,987	-		Psyr_4864	0.49	-2.5
5,772,987	-		Psyr_4864	0.49	-1.6
5,772,987	-		Psyr_4864	0.49	+5.3
5,773,034	-		Psyr_4864	0.53	-3.2
5,773,176	-		Psyr_4864	0.66	+0.3
5,773,235	+		Psyr_4864	0.71	+2.7
5,773,235	+		Psyr_4864	0.71	-2.2
5,773,235	+		Psyr_4864	0.71	-0.2
5,773,235	+		Psyr_4864	0.71	+0.6
5,773,236	-		Psyr_4864	0.71	+0.4
5,773,236	-		Psyr_4864	0.71	+2.3
5,773,236	-		Psyr_4864	0.71	-0.2
5,773,385	+		Psyr_4864	0.85	-1.5
5,773,386	-		Psyr_4864	0.85	+3.2
5,773,386	-		Psyr_4864	0.85	-1.5
5,773,386	-		Psyr_4864	0.85	+0.4
5,773,442	+				+0.6
5,773,442	+				+2.1
5,773,442	+				+2.6
5,773,442	+				-1.2
5,773,443	-				-0.5
5,773,457	+				+1.5
5,773,457	+				+0.8
5,773,457	+				-0.2
5,773,457	+				-1.7
5,773,457	+				-1.7
5,773,457	+				-0.2
5,773,457	+				+0.3
5,773,457	+				-0.2
5,773,457	+				+0.3
5,773,457	+				+3.7
5,773,457	+				-0.4
5,773,457	+				-3.5
5,773,458	-				-2.2
5,773,458	-				+1.0
5,773,458	-				-1.7
5,773,458	-				-1.0
5,773,458	-				-2.2
5,773,458	-				-1.0
5,773,458	-				+0.5
5,773,458	-				-1.2
5,773,458	-				+0.0
5,773,458	-				+0.1
5,773,458	-				-1.7
5,773,458	-				-1.2
5,773,461	+				+1.5
5,773,461	+				+0.8
5,773,461	+				-2.1
5,773,461	+				+0.3
5,773,461	+				-0.4
5,773,461	+				-2.3
5,773,461	+				+0.4
5,773,461	+				-2.0
5,773,461	+				-2.6
5,773,461	+				-1.2
5,773,461	+				-0.7
5,773,461	+				-2.0
5,773,461	+				-1.0
5,773,462	-				-0.2
5,773,462	-				-2.2
5,773,462	-				-0.7
5,773,462	-				-1.2
5,773,462	-				-1.2
5,773,462	-				-1.5
5,773,462	-				-0.7
5,773,462	-				-0.7
5,773,462	-				-1.3
5,773,462	-				-1.2
5,773,542	+				-0.2
5,773,542	+				-1.2
5,773,543	-				-1.2
5,773,563	+				-1.5
5,773,564	-				-1.0
5,773,564	-				+3.7
5,773,619	+				-1.6
5,773,620	-				+1.7
5,773,620	-				-0.2
5,773,620	-				-0.7
5,773,620	-				-2.5
5,773,626	+				-3.2
5,773,627	-				-0.4
5,773,627	-				-0.8
5,773,627	-				+0.6
5,773,657	-				+0.8
5,773,721	+				+1.0
5,773,721	+				+1.6
5,773,721	+				-0.9
5,773,722	-				-2.2
5,773,734	+				-3.5
5,773,734	+				+1.5
5,773,734	+				-0.9
5,773,735	-				-0.4
5,773,735	-				+1.7
5,773,735	-				+0.7
5,773,796	+				+4.8
5,773,796	+				-1.2
5,773,796	+				+2.2
5,773,797	-				+1.2
5,773,797	-				+0.2
5,773,797	-				-1.7
5,773,797	-				-0.2
5,773,955	+		Psyr_4865	0.21	-0.7
5,773,955	+		Psyr_4865	0.21	-1.7
5,773,955	+		Psyr_4865	0.21	-1.2
5,773,956	-		Psyr_4865	0.21	-0.0
5,773,956	-		Psyr_4865	0.21	-1.2
5,773,956	-		Psyr_4865	0.21	-0.2
5,773,956	-		Psyr_4865	0.21	-0.2
5,774,003	+		Psyr_4865	0.26	-2.6
5,774,003	+		Psyr_4865	0.26	+2.8
5,774,003	+		Psyr_4865	0.26	+1.8
5,774,003	+		Psyr_4865	0.26	+0.4
5,774,003	+		Psyr_4865	0.26	+2.1
5,774,003	+		Psyr_4865	0.26	+2.1
5,774,003	+		Psyr_4865	0.26	+1.1
5,774,004	-		Psyr_4865	0.26	+1.6
5,774,004	-		Psyr_4865	0.26	-1.7
5,774,004	-		Psyr_4865	0.26	-2.6
5,774,004	-		Psyr_4865	0.26	+1.8
5,774,004	-		Psyr_4865	0.26	-0.6
5,774,036	+		Psyr_4865	0.29	+1.8
5,774,037	-		Psyr_4865	0.29	+2.2
5,774,037	-		Psyr_4865	0.29	-2.0
5,774,087	+		Psyr_4865	0.33	-3.1
5,774,087	+		Psyr_4865	0.33	+2.4
5,774,087	+		Psyr_4865	0.33	-2.2
5,774,087	+		Psyr_4865	0.33	-1.7
5,774,087	+		Psyr_4865	0.33	-0.2
5,774,088	-		Psyr_4865	0.34	-0.2
5,774,088	-		Psyr_4865	0.34	+0.6
5,774,088	-		Psyr_4865	0.34	+2.4
5,774,088	-		Psyr_4865	0.34	-0.8
5,774,091	+		Psyr_4865	0.34	+1.2
5,774,092	-		Psyr_4865	0.34	+1.2
5,774,092	-		Psyr_4865	0.34	+1.9
5,774,147	+		Psyr_4865	0.39	-2.0
5,774,147	+		Psyr_4865	0.39	-2.0
5,774,147	+		Psyr_4865	0.39	+0.2
5,774,147	+		Psyr_4865	0.39	-2.6
5,774,147	+		Psyr_4865	0.39	-1.2
5,774,147	+		Psyr_4865	0.39	+1.0
5,774,147	+		Psyr_4865	0.39	+3.1
5,774,147	+		Psyr_4865	0.39	+1.8
5,774,147	+		Psyr_4865	0.39	-1.5
5,774,147	+		Psyr_4865	0.39	+1.9
5,774,148	-		Psyr_4865	0.39	-0.6
5,774,148	-		Psyr_4865	0.39	-1.2
5,774,148	-		Psyr_4865	0.39	+0.2
5,774,148	-		Psyr_4865	0.39	-0.5
5,774,148	-		Psyr_4865	0.39	-1.1
5,774,148	-		Psyr_4865	0.39	+3.2
5,774,148	-		Psyr_4865	0.39	-0.1
5,774,148	-		Psyr_4865	0.39	+0.3
5,774,165	+		Psyr_4865	0.41	-0.5
5,774,252	+		Psyr_4865	0.48	+1.2
5,774,252	+		Psyr_4865	0.48	-0.2
5,774,252	+		Psyr_4865	0.48	+0.4
5,774,253	-		Psyr_4865	0.49	-0.2
5,774,253	-		Psyr_4865	0.49	-2.2
5,774,314	+		Psyr_4865	0.54	-1.2
5,774,430	+		Psyr_4865	0.65	-1.7
5,774,430	+		Psyr_4865	0.65	+4.7
5,774,430	+		Psyr_4865	0.65	-1.2
5,774,430	+		Psyr_4865	0.65	-0.2
5,774,430	+		Psyr_4865	0.65	+1.8
5,774,430	+		Psyr_4865	0.65	+0.7
5,774,430	+		Psyr_4865	0.65	+0.6
5,774,430	+		Psyr_4865	0.65	-2.7
5,774,430	+		Psyr_4865	0.65	-2.6
5,774,430	+		Psyr_4865	0.65	+0.4
5,774,430	+		Psyr_4865	0.65	+1.1
5,774,430	+		Psyr_4865	0.65	-1.3
5,774,430	+		Psyr_4865	0.65	+1.9
5,774,431	-		Psyr_4865	0.65	-1.5
5,774,431	-		Psyr_4865	0.65	-3.4
5,774,431	-		Psyr_4865	0.65	-2.7
5,774,431	-		Psyr_4865	0.65	+0.2
5,774,431	-		Psyr_4865	0.65	+1.8
5,774,431	-		Psyr_4865	0.65	-0.6
5,774,431	-		Psyr_4865	0.65	-1.7
5,774,431	-		Psyr_4865	0.65	-1.5
5,774,431	-		Psyr_4865	0.65	-2.2
5,774,431	-		Psyr_4865	0.65	+0.5
5,774,431	-		Psyr_4865	0.65	+0.8
5,774,432	+		Psyr_4865	0.65	-2.2
5,774,432	+		Psyr_4865	0.65	+1.8
5,774,433	-		Psyr_4865	0.65	+0.0
5,774,433	-		Psyr_4865	0.65	-1.2
5,774,444	+		Psyr_4865	0.66	-1.2
5,774,444	+		Psyr_4865	0.66	-2.2
5,774,444	+		Psyr_4865	0.66	-1.7
5,774,444	+		Psyr_4865	0.66	+0.8
5,774,445	-		Psyr_4865	0.66	+0.8
5,774,445	-		Psyr_4865	0.66	+1.0
5,774,445	-		Psyr_4865	0.66	+0.1
5,774,452	-		Psyr_4865	0.67	+1.3
5,774,594	+		Psyr_4865	0.80	+1.7
5,774,654	+		Psyr_4865	0.85	+1.3
5,774,655	-		Psyr_4865	0.85	-0.2
5,774,711	+				-0.9
5,774,712	-				-0.9
5,774,712	-				+1.7
5,774,712	-				+0.6
5,774,712	-				+0.4
5,774,724	+				+1.1
5,774,724	+				+0.2
5,774,724	+				-0.7
5,774,725	-				-1.5
5,774,725	-				-2.0
5,774,725	-				+1.3
5,774,725	-				+0.8
5,774,726	+				+5.7
5,774,726	+				-0.3
5,774,726	+				-0.7
5,774,726	+				+2.4
5,774,726	+				-1.2
5,774,726	+				-0.2
5,774,726	+				+2.0
5,774,726	+				-0.3
5,774,726	+				+1.8
5,774,727	-				+1.3
5,774,727	-				+3.2
5,774,727	-				-0.6
5,774,821	+				-2.6
5,774,821	+				-0.6
5,774,821	+				-1.5
5,774,821	+				-2.2
5,774,821	+				-1.2
5,774,821	+				-0.2
5,774,822	-				-0.7
5,774,822	-				+1.3
5,774,832	+				+2.2
5,774,832	+				+0.7
5,774,832	+				-2.3
5,774,833	-				+1.3
5,774,833	-				+0.7
5,774,838	+				-2.7
5,775,146	-		Psyr_4866	0.14	+2.5
5,775,259	+		Psyr_4866	0.22	+1.0
5,775,259	+		Psyr_4866	0.22	+2.0
5,775,259	+		Psyr_4866	0.22	-0.4
5,775,260	-		Psyr_4866	0.22	+4.3
5,775,260	-		Psyr_4866	0.22	-0.4
5,775,358	+		Psyr_4866	0.29	-1.2
5,775,359	-		Psyr_4866	0.29	+0.1
5,775,359	-		Psyr_4866	0.29	-1.0
5,775,359	-		Psyr_4866	0.29	-0.6
5,775,359	-		Psyr_4866	0.29	-1.0
5,775,359	-		Psyr_4866	0.29	+3.2
5,775,362	+		Psyr_4866	0.29	-2.2
5,775,362	+		Psyr_4866	0.29	+0.1
5,775,362	+		Psyr_4866	0.29	+1.1
5,775,438	+		Psyr_4866	0.35	-1.5
5,775,439	-		Psyr_4866	0.35	+3.0
5,775,439	-		Psyr_4866	0.35	+0.5
5,775,443	-		Psyr_4866	0.35	-1.5
5,775,443	-		Psyr_4866	0.35	-0.2
5,775,493	+		Psyr_4866	0.39	-0.2
5,775,494	-		Psyr_4866	0.39	+0.5
5,775,494	-		Psyr_4866	0.39	+1.8
5,775,521	+		Psyr_4866	0.41	+1.3
5,775,602	-		Psyr_4866	0.47	-0.2
5,775,763	+		Psyr_4866	0.59	+2.0
5,775,764	-		Psyr_4866	0.59	+2.8