Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4812 and Psyr_4813 are separated by 39 nucleotides Psyr_4813 and Psyr_4814 are separated by 130 nucleotides Psyr_4814 and Psyr_4815 are separated by 100 nucleotides
Psyr_4812: Psyr_4812 - sorbitol-binding protein / mannitol-binding protein, at 5,707,179 to 5,708,495
_4812
Psyr_4813: Psyr_4813 - Short-chain dehydrogenase/reductase SDR, at 5,708,535 to 5,709,308
_4813
Psyr_4814: Psyr_4814 - transcriptional regulator, DeoR family, at 5,709,439 to 5,710,263
_4814
Psyr_4815: Psyr_4815 - Small GTP-binding protein domain:GTP-binding protein TypA, at 5,710,364 to 5,712,184
_4815
Position (kb) 5709
5710
5711 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5708.493 kb on + strand at 5708.493 kb on + strand at 5708.493 kb on + strand at 5708.494 kb on - strand at 5708.514 kb on + strand at 5708.515 kb on - strand at 5708.515 kb on - strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.755 kb on + strand, within Psyr_4813 at 5708.755 kb on + strand, within Psyr_4813 at 5708.844 kb on + strand, within Psyr_4813 at 5708.991 kb on + strand, within Psyr_4813 at 5708.991 kb on + strand, within Psyr_4813 at 5708.992 kb on - strand, within Psyr_4813 at 5708.992 kb on - strand, within Psyr_4813 at 5709.258 kb on + strand at 5709.258 kb on + strand at 5709.259 kb on - strand at 5709.259 kb on - strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.322 kb on + strand at 5709.322 kb on + strand at 5709.322 kb on + strand at 5709.323 kb on - strand at 5709.323 kb on - strand at 5709.323 kb on - strand at 5709.383 kb on + strand at 5709.426 kb on + strand at 5709.426 kb on + strand at 5709.426 kb on + strand at 5709.427 kb on - strand at 5709.427 kb on - strand at 5709.427 kb on - strand at 5709.427 kb on - strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.769 kb on + strand, within Psyr_4814 at 5709.769 kb on + strand, within Psyr_4814 at 5709.769 kb on + strand, within Psyr_4814 at 5709.769 kb on + strand, within Psyr_4814 at 5709.769 kb on + strand, within Psyr_4814 at 5709.769 kb on + strand, within Psyr_4814 at 5709.770 kb on - strand, within Psyr_4814 at 5710.114 kb on + strand, within Psyr_4814 at 5710.115 kb on - strand, within Psyr_4814 at 5710.128 kb on + strand, within Psyr_4814 at 5710.128 kb on + strand, within Psyr_4814 at 5710.128 kb on + strand, within Psyr_4814 at 5710.128 kb on + strand, within Psyr_4814 at 5710.128 kb on + strand, within Psyr_4814 at 5710.129 kb on - strand, within Psyr_4814 at 5710.129 kb on - strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.132 kb on + strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.133 kb on - strand, within Psyr_4814 at 5710.261 kb on + strand at 5710.261 kb on + strand at 5710.261 kb on + strand at 5710.261 kb on + strand at 5710.309 kb on - strand at 5710.362 kb on - strand at 5710.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 5,708,493 + +0.3 5,708,493 + +1.2 5,708,493 + +1.0 5,708,494 - -1.3 5,708,514 + +2.0 5,708,515 - -1.1 5,708,515 - -0.0 5,708,610 + +2.7 5,708,610 + -0.5 5,708,610 + +2.6 5,708,610 + +0.1 5,708,610 + +1.9 5,708,610 + -0.9 5,708,611 - +0.8 5,708,611 - -2.3 5,708,611 - -2.7 5,708,611 - -0.1 5,708,611 - -0.7 5,708,611 - -2.3 5,708,611 - -1.2 5,708,611 - -1.1 5,708,611 - +0.9 5,708,611 - -1.9 5,708,611 - -3.7 5,708,755 + Psyr_4813 0.28 -1.9 5,708,755 + Psyr_4813 0.28 +0.9 5,708,844 + Psyr_4813 0.40 -2.3 5,708,991 + Psyr_4813 0.59 +2.8 5,708,991 + Psyr_4813 0.59 -2.3 5,708,992 - Psyr_4813 0.59 +0.9 5,708,992 - Psyr_4813 0.59 -0.4 5,709,258 + +0.3 5,709,258 + -0.5 5,709,259 - -1.1 5,709,259 - +5.8 5,709,276 + -1.9 5,709,276 + +0.9 5,709,276 + -0.5 5,709,276 + -0.7 5,709,276 + +1.9 5,709,276 + -2.9 5,709,276 + +1.2 5,709,277 - -2.9 5,709,277 - +1.3 5,709,277 - -1.5 5,709,277 - -0.6 5,709,277 - -0.1 5,709,277 - +0.6 5,709,277 - -1.1 5,709,277 - -2.5 5,709,277 - +1.2 5,709,277 - +3.6 5,709,277 - -2.1 5,709,277 - +3.4 5,709,277 - +4.0 5,709,322 + -1.7 5,709,322 + +0.7 5,709,322 + -0.1 5,709,323 - +0.9 5,709,323 - -2.5 5,709,323 - +1.1 5,709,383 + -1.9 5,709,426 + -0.5 5,709,426 + -1.1 5,709,426 + -0.2 5,709,427 - -2.0 5,709,427 - -0.2 5,709,427 - -2.6 5,709,427 - -1.2 5,709,480 + -1.2 5,709,480 + -1.2 5,709,480 + -2.3 5,709,480 + +0.0 5,709,480 + -2.6 5,709,480 + +0.8 5,709,480 + -0.6 5,709,480 + +0.7 5,709,480 + +1.3 5,709,480 + +0.8 5,709,480 + +3.6 5,709,480 + +2.4 5,709,480 + +0.4 5,709,480 + -0.2 5,709,480 + -1.2 5,709,480 + -1.7 5,709,480 + +0.4 5,709,480 + +0.8 5,709,481 - -2.2 5,709,481 - -0.2 5,709,481 - -1.5 5,709,481 - +0.4 5,709,481 - -2.3 5,709,481 - +1.4 5,709,481 - -2.7 5,709,481 - -2.0 5,709,481 - -0.2 5,709,481 - +1.4 5,709,481 - -1.7 5,709,481 - +1.1 5,709,481 - -0.2 5,709,481 - -1.6 5,709,481 - +0.8 5,709,769 + Psyr_4814 0.40 -1.5 5,709,769 + Psyr_4814 0.40 -0.5 5,709,769 + Psyr_4814 0.40 +0.8 5,709,769 + Psyr_4814 0.40 -2.2 5,709,769 + Psyr_4814 0.40 -1.2 5,709,769 + Psyr_4814 0.40 -2.3 5,709,770 - Psyr_4814 0.40 +3.2 5,710,114 + Psyr_4814 0.82 -2.3 5,710,115 - Psyr_4814 0.82 -0.7 5,710,128 + Psyr_4814 0.84 -0.7 5,710,128 + Psyr_4814 0.84 -1.0 5,710,128 + Psyr_4814 0.84 -1.2 5,710,128 + Psyr_4814 0.84 -0.4 5,710,128 + Psyr_4814 0.84 -0.8 5,710,129 - Psyr_4814 0.84 -1.2 5,710,129 - Psyr_4814 0.84 -1.3 5,710,132 + Psyr_4814 0.84 +0.2 5,710,132 + Psyr_4814 0.84 -0.6 5,710,132 + Psyr_4814 0.84 +0.7 5,710,132 + Psyr_4814 0.84 -1.5 5,710,132 + Psyr_4814 0.84 -0.2 5,710,132 + Psyr_4814 0.84 -0.2 5,710,132 + Psyr_4814 0.84 -1.2 5,710,132 + Psyr_4814 0.84 -2.7 5,710,132 + Psyr_4814 0.84 -2.3 5,710,132 + Psyr_4814 0.84 +1.5 5,710,132 + Psyr_4814 0.84 -1.0 5,710,132 + Psyr_4814 0.84 -1.5 5,710,132 + Psyr_4814 0.84 -1.0 5,710,132 + Psyr_4814 0.84 -0.7 5,710,132 + Psyr_4814 0.84 -3.7 5,710,132 + Psyr_4814 0.84 +0.8 5,710,132 + Psyr_4814 0.84 -3.1 5,710,132 + Psyr_4814 0.84 -2.9 5,710,132 + Psyr_4814 0.84 -0.2 5,710,132 + Psyr_4814 0.84 +1.3 5,710,133 - Psyr_4814 0.84 +0.6 5,710,133 - Psyr_4814 0.84 -0.7 5,710,133 - Psyr_4814 0.84 +0.8 5,710,133 - Psyr_4814 0.84 -1.7 5,710,133 - Psyr_4814 0.84 +0.3 5,710,133 - Psyr_4814 0.84 +0.9 5,710,133 - Psyr_4814 0.84 -1.5 5,710,133 - Psyr_4814 0.84 -0.2 5,710,133 - Psyr_4814 0.84 +0.5 5,710,133 - Psyr_4814 0.84 -1.7 5,710,133 - Psyr_4814 0.84 +0.3 5,710,133 - Psyr_4814 0.84 +0.3 5,710,133 - Psyr_4814 0.84 -2.6 5,710,261 + -2.2 5,710,261 + -2.2 5,710,261 + +0.5 5,710,261 + -2.7 5,710,309 - +0.2 5,710,362 - -0.7 5,710,362 - -0.3
Or see this region's nucleotide sequence