Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4665

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
5,528,393	+		Psyr_4664	0.62	-0.9
5,528,394	-		Psyr_4664	0.62	-3.1
5,528,443	+		Psyr_4664	0.67	+3.4
5,528,443	+		Psyr_4664	0.67	-0.7
5,528,444	-		Psyr_4664	0.67	-0.7
5,528,444	-		Psyr_4664	0.67	+3.8
5,528,444	-		Psyr_4664	0.67	+1.6
5,528,547	+		Psyr_4664	0.76	-0.4
5,528,548	-		Psyr_4664	0.76	-1.3
5,528,549	+		Psyr_4664	0.76	+0.0
5,528,549	+		Psyr_4664	0.76	+2.5
5,528,549	+		Psyr_4664	0.76	+1.6
5,528,549	+		Psyr_4664	0.76	-0.3
5,528,549	+		Psyr_4664	0.76	-0.7
5,528,549	+		Psyr_4664	0.76	-2.0
5,528,549	+		Psyr_4664	0.76	-2.5
5,528,549	+		Psyr_4664	0.76	+0.8
5,528,549	+		Psyr_4664	0.76	-1.5
5,528,550	-		Psyr_4664	0.76	+2.3
5,528,550	-		Psyr_4664	0.76	+0.3
5,528,550	-		Psyr_4664	0.76	-0.1
5,528,550	-		Psyr_4664	0.76	+2.0
5,528,550	-		Psyr_4664	0.76	+1.2
5,528,550	-		Psyr_4664	0.76	+1.2
5,528,550	-		Psyr_4664	0.76	-2.3
5,528,585	+		Psyr_4664	0.79	-1.5
5,528,585	+		Psyr_4664	0.79	+1.5
5,528,585	+		Psyr_4664	0.79	-1.1
5,528,585	+		Psyr_4664	0.79	+0.1
5,528,585	+		Psyr_4664	0.79	-1.4
5,528,585	+		Psyr_4664	0.79	-2.5
5,528,585	+		Psyr_4664	0.79	+1.2
5,528,585	+		Psyr_4664	0.79	-0.1
5,528,585	+		Psyr_4664	0.79	-0.5
5,528,586	-		Psyr_4664	0.79	+2.6
5,528,586	-		Psyr_4664	0.79	-1.1
5,528,586	-		Psyr_4664	0.79	-1.7
5,528,586	-		Psyr_4664	0.79	-0.1
5,528,586	-		Psyr_4664	0.79	+0.9
5,528,586	-		Psyr_4664	0.79	+0.3
5,528,586	-		Psyr_4664	0.79	+3.5
5,528,586	-		Psyr_4664	0.79	-1.3
5,528,687	-		Psyr_4664	0.88	-1.0
5,528,687	-		Psyr_4664	0.88	+4.1
5,528,732	+				-0.7
5,528,732	+				+0.1
5,528,732	+				+4.6
5,528,732	+				-0.7
5,528,732	+				+1.8
5,528,732	+				-1.1
5,528,732	+				-0.6
5,528,732	+				+1.2
5,528,733	-				+1.8
5,528,733	-				+2.9
5,528,733	-				+0.3
5,528,733	-				+1.0
5,528,733	-				+0.9
5,528,733	-				-0.7
5,528,733	-				-2.0
5,528,733	-				+0.7
5,528,733	-				-0.7
5,528,733	-				-2.0
5,528,733	-				-2.1
5,528,819	-				+4.7
5,528,819	-				+2.0
5,528,918	+				+0.5
5,528,918	+				-1.1
5,528,918	+				-0.9
5,528,919	-				+0.6
5,528,919	-				-0.3
5,528,919	-				-0.7
5,528,921	+				-2.0
5,528,921	+				-2.7
5,528,921	+				-1.3
5,528,921	+				+0.4
5,528,921	+				+1.4
5,528,921	+				+0.0
5,528,921	+				-0.0
5,528,921	+				+1.2
5,528,922	-				-3.0
5,528,922	-				-2.5
5,528,922	-				-1.5
5,529,064	+				-1.3
5,529,064	+				-3.0
5,529,064	+				-0.7
5,529,064	+				-0.9
5,529,065	-				-0.8
5,529,065	-				+1.2
5,529,065	-				-1.0
5,529,065	-				-0.7
5,529,079	-				+1.9
5,529,079	-				+1.0
5,529,081	+				+0.5
5,529,081	+				-2.3
5,529,082	-				-0.7
5,529,082	-				-0.1
5,529,101	+				-1.5
5,529,101	+				+0.9
5,529,101	+				-2.3
5,529,101	+				-1.5
5,529,101	+				-0.5
5,529,101	+				-2.5
5,529,101	+				-1.0
5,529,101	+				+1.3
5,529,102	-				-0.9
5,529,102	-				+0.9
5,529,102	-				-0.1
5,529,102	-				-0.5
5,529,102	-				+3.0
5,529,102	-				+0.7
5,529,102	-				-0.6
5,529,110	+				-1.5
5,529,110	+				-0.7
5,529,121	+				+2.4
5,529,121	+				-2.5
5,529,121	+				-1.0
5,529,122	-				-1.5
5,529,122	-				-1.5
5,529,122	-				-2.1
5,529,122	-				-0.6
5,529,122	-				-3.5
5,529,126	-				+1.0
5,529,133	+				+1.7
5,529,134	-				-2.6
5,529,144	-				-1.5
5,529,144	-				-1.0
5,529,168	+				-2.0
5,529,168	+				+0.5
5,529,168	+				-0.1
5,529,168	+				-0.7
5,529,168	+				-2.7
5,529,169	-				-0.2
5,529,169	-				-0.6
5,529,169	-				+1.6
5,529,179	+				+4.1
5,529,180	-				-2.0
5,529,197	+				+1.8
5,529,198	-				+0.9
5,529,198	-				+0.9
5,529,198	-				+2.3
5,529,220	+				-0.7
5,529,220	+				-1.0
5,529,220	+				-2.3
5,529,221	-				+0.1
5,529,221	-				-2.8
5,529,221	-				-2.0
5,529,221	-				-0.1
5,529,221	-				-1.5
5,529,221	-				-2.3
5,529,221	-				-0.3
5,529,221	-				+0.9
5,529,221	-				-0.9
5,529,251	+				+2.7
5,529,251	+				-2.3
5,529,251	+				+0.3
5,529,447	+		Psyr_4665	0.12	+0.2
5,529,448	-		Psyr_4665	0.13	+0.9
5,529,448	-		Psyr_4665	0.13	+4.0
5,529,568	+		Psyr_4665	0.24	-2.0
5,529,608	+		Psyr_4665	0.27	-3.0
5,529,609	-		Psyr_4665	0.27	-0.7
5,529,646	+		Psyr_4665	0.31	-1.0
5,529,646	+		Psyr_4665	0.31	-1.4
5,529,647	-		Psyr_4665	0.31	-2.7
5,529,647	-		Psyr_4665	0.31	+0.5
5,529,647	-		Psyr_4665	0.31	-0.5
5,529,682	+		Psyr_4665	0.34	+0.4
5,529,757	+		Psyr_4665	0.41	+1.2
5,529,757	+		Psyr_4665	0.41	+0.3
5,529,758	-		Psyr_4665	0.41	-1.7
5,529,758	-		Psyr_4665	0.41	+2.1
5,529,758	-		Psyr_4665	0.41	+2.3
5,529,847	+		Psyr_4665	0.50	+0.2
5,529,847	+		Psyr_4665	0.50	+1.2
5,529,847	+		Psyr_4665	0.50	+1.9
5,529,848	-		Psyr_4665	0.50	-0.3
5,529,848	-		Psyr_4665	0.50	+2.7
5,529,869	-		Psyr_4665	0.52	+0.3
5,529,907	+		Psyr_4665	0.55	+2.3
5,530,104	+		Psyr_4665	0.73	+0.2
5,530,387	+				-1.6
5,530,388	-				-0.3
5,530,619	+		Psyr_4666	0.47	-0.2
5,530,619	+		Psyr_4666	0.47	-0.7
5,530,619	+		Psyr_4666	0.47	+1.1
5,530,619	+		Psyr_4666	0.47	-2.1
5,530,619	+		Psyr_4666	0.47	-0.4
5,530,619	+		Psyr_4666	0.47	+2.7
5,530,619	+		Psyr_4666	0.47	+0.8
5,530,619	+		Psyr_4666	0.47	-0.5
5,530,619	+		Psyr_4666	0.47	+2.7
5,530,620	-		Psyr_4666	0.48	+1.8
5,530,620	-		Psyr_4666	0.48	-0.7
5,530,620	-		Psyr_4666	0.48	+2.9
5,530,620	-		Psyr_4666	0.48	-0.2
5,530,620	-		Psyr_4666	0.48	-2.0
5,530,620	-		Psyr_4666	0.48	-3.4
5,530,620	-		Psyr_4666	0.48	+0.9
5,530,620	-		Psyr_4666	0.48	-3.1
5,530,620	-		Psyr_4666	0.48	+0.8
5,530,620	-		Psyr_4666	0.48	-0.2
5,530,620	-		Psyr_4666	0.48	-1.0
5,530,724	+		Psyr_4666	0.70	+1.5
5,530,725	-		Psyr_4666	0.70	+1.3
5,530,725	-		Psyr_4666	0.70	+1.3
5,530,725	-		Psyr_4666	0.70	-3.1
5,530,725	-		Psyr_4666	0.70	-1.5
5,530,725	-		Psyr_4666	0.70	-1.2
5,530,725	-		Psyr_4666	0.70	-0.5
5,530,725	-		Psyr_4666	0.70	-2.7
5,530,770	+		Psyr_4666	0.80	+0.4
5,530,873	+				-1.5
5,530,873	+				-0.6
5,530,873	+				-2.5
5,530,874	-				-2.3
5,530,874	-				+1.8
5,530,952	+				+1.5
5,530,952	+				+0.2
5,530,952	+				-1.5
5,530,955	+				-3.5
5,530,975	-				-0.3
5,531,161	-				+1.8
5,531,194	+		Psyr_4667	0.11	-1.5
5,531,230	+		Psyr_4667	0.13	-1.2
5,531,230	+		Psyr_4667	0.13	-1.5
5,531,231	-		Psyr_4667	0.13	-0.7
5,531,231	-		Psyr_4667	0.13	-1.3
5,531,347	+		Psyr_4667	0.20	+0.6
5,531,347	+		Psyr_4667	0.20	-0.7
5,531,347	+		Psyr_4667	0.20	-0.9
5,531,348	-		Psyr_4667	0.20	+0.8
5,531,348	-		Psyr_4667	0.20	+0.4
5,531,348	-		Psyr_4667	0.20	+1.5
5,531,348	-		Psyr_4667	0.20	-1.2