Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4307

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
5,131,273	-		Psyr_4305	0.71	-0.8
5,131,408	+				-1.6
5,131,408	+				-2.4
5,131,408	+				-1.6
5,131,408	+				-1.8
5,131,408	+				-1.1
5,131,408	+				+0.7
5,131,409	-				+1.9
5,131,409	-				+2.1
5,131,409	-				-1.6
5,131,409	-				+0.7
5,131,409	-				+0.7
5,131,409	-				+0.5
5,131,409	-				+1.1
5,131,438	+				-0.3
5,131,438	+				-1.8
5,131,438	+				-1.3
5,131,438	+				+3.7
5,131,438	+				+3.0
5,131,438	+				-0.2
5,131,439	-				+2.1
5,131,439	-				-1.8
5,131,439	-				+0.7
5,131,439	-				+1.2
5,131,439	-				-1.3
5,131,439	-				-1.3
5,131,442	+				+1.7
5,131,443	-				+3.2
5,131,443	-				-2.7
5,131,605	-		Psyr_4306	0.79	+1.4
5,131,638	-				-0.4
5,131,697	-				-2.1
5,131,730	-				+1.1
5,131,730	-				-1.9
5,131,731	+				+2.4
5,131,731	+				-0.5
5,131,731	+				-0.3
5,131,732	-				-1.3
5,131,759	-				-3.2
5,131,759	-				+4.1
5,131,759	-				-0.6
5,131,759	-				+0.1
5,131,759	-				-0.6
5,131,762	+				-2.7
5,131,830	-				+1.5
5,131,830	-				-0.3
5,131,830	-				+2.7
5,131,913	-				-1.7
5,131,913	-				-1.4
5,131,922	+				-0.7
5,131,922	+				+1.7
5,131,922	+				+0.9
5,131,922	+				+0.1
5,131,922	+				+1.1
5,131,929	+				+1.5
5,131,929	+				-2.1
5,131,929	+				+0.7
5,131,930	-				+1.4
5,131,955	+				+1.8
5,131,955	+				+1.6
5,131,955	+				+2.5
5,131,955	+				-2.2
5,131,955	+				+0.7
5,131,956	-				-0.7
5,131,956	-				-1.3
5,131,956	-				+0.3
5,131,956	-				-1.6
5,131,956	-				+2.3
5,131,956	-				+0.7
5,131,963	-				-2.1
5,131,963	-				-0.9
5,131,968	-				-1.9
5,132,105	-				+1.2
5,132,138	+				-1.4
5,132,138	+				-0.0
5,132,139	-				-0.9
5,132,139	-				-2.4
5,132,166	+				-0.9
5,132,166	+				-0.9
5,132,166	+				-1.7
5,132,167	-				+3.7
5,132,167	-				-0.8
5,132,167	-				+2.7
5,132,168	+				-2.3
5,132,169	-				+1.2
5,132,169	-				+1.3
5,132,169	-				-2.3
5,132,169	-				-2.1
5,132,169	-				-2.6
5,132,169	-				+0.7
5,132,172	+				+1.5
5,132,172	+				+0.5
5,132,172	+				-0.0
5,132,173	-				-0.3
5,132,173	-				+2.7
5,132,173	-				-1.6
5,132,173	-				+1.7
5,132,173	-				+1.8
5,132,173	-				+2.0
5,132,174	+				-1.3
5,132,190	+				-0.4
5,132,190	+				-0.1
5,132,190	+				+1.3
5,132,191	-				-3.6
5,132,193	+				-2.1
5,132,193	+				-1.6
5,132,194	-				+1.7
5,132,194	-				-1.6
5,132,194	-				-2.7
5,132,194	-				+1.7
5,132,229	+				+0.4
5,132,230	-				-1.5
5,132,281	+				-1.9
5,132,281	+				-1.3
5,132,281	+				+2.1
5,132,282	-				+2.6
5,132,309	-		Psyr_4307	0.10	+0.7
5,132,332	-		Psyr_4307	0.13	-1.9
5,132,333	+		Psyr_4307	0.13	-1.6
5,132,333	+		Psyr_4307	0.13	-0.6
5,132,334	-		Psyr_4307	0.13	-1.3
5,132,417	-		Psyr_4307	0.22	-2.1
5,132,453	+		Psyr_4307	0.26	+1.9
5,132,454	-		Psyr_4307	0.26	+1.1
5,132,515	-		Psyr_4307	0.32	+0.3
5,132,526	+		Psyr_4307	0.33	-1.0
5,132,545	+		Psyr_4307	0.35	-1.6
5,132,545	+		Psyr_4307	0.35	+0.3
5,132,545	+		Psyr_4307	0.35	-1.3
5,132,545	+		Psyr_4307	0.35	-0.9
5,132,545	+		Psyr_4307	0.35	+1.8
5,132,545	+		Psyr_4307	0.35	-3.1
5,132,545	+		Psyr_4307	0.35	-0.8
5,132,545	+		Psyr_4307	0.35	+2.6
5,132,545	+		Psyr_4307	0.35	-2.1
5,132,545	+		Psyr_4307	0.35	-0.9
5,132,545	+		Psyr_4307	0.35	-0.9
5,132,545	+		Psyr_4307	0.35	-0.3
5,132,545	+		Psyr_4307	0.35	+0.7
5,132,545	+		Psyr_4307	0.35	+0.9
5,132,545	+		Psyr_4307	0.35	+0.6
5,132,545	+		Psyr_4307	0.35	+1.1
5,132,545	+		Psyr_4307	0.35	+4.1
5,132,546	-		Psyr_4307	0.35	+1.7
5,132,546	-		Psyr_4307	0.35	+0.1
5,132,546	-		Psyr_4307	0.35	+1.5
5,132,546	-		Psyr_4307	0.35	-0.4
5,132,546	-		Psyr_4307	0.35	-0.0
5,132,546	-		Psyr_4307	0.35	-2.1
5,132,546	-		Psyr_4307	0.35	+2.1
5,132,546	-		Psyr_4307	0.35	-0.6
5,132,546	-		Psyr_4307	0.35	+0.7
5,132,546	-		Psyr_4307	0.35	+0.3
5,132,546	-		Psyr_4307	0.35	-0.7
5,132,546	-		Psyr_4307	0.35	+0.7
5,132,546	-		Psyr_4307	0.35	-2.1
5,132,546	-		Psyr_4307	0.35	-1.3
5,132,546	-		Psyr_4307	0.35	+1.5
5,132,546	-		Psyr_4307	0.35	+0.3
5,132,674	-		Psyr_4307	0.49	-2.7
5,132,714	+		Psyr_4307	0.53	-3.6
5,132,714	+		Psyr_4307	0.53	+1.0
5,132,715	-		Psyr_4307	0.54	-2.1
5,132,758	+		Psyr_4307	0.58	+2.2
5,132,758	+		Psyr_4307	0.58	-1.9
5,132,759	-		Psyr_4307	0.58	-2.1
5,132,759	-		Psyr_4307	0.58	-0.5
5,132,762	+		Psyr_4307	0.59	-1.1
5,132,762	+		Psyr_4307	0.59	+1.7
5,132,762	+		Psyr_4307	0.59	-3.4
5,132,762	+		Psyr_4307	0.59	-0.3
5,132,762	+		Psyr_4307	0.59	-2.4
5,132,763	-		Psyr_4307	0.59	-0.3
5,132,763	-		Psyr_4307	0.59	+0.6
5,132,763	-		Psyr_4307	0.59	+0.4
5,132,763	-		Psyr_4307	0.59	+1.3
5,132,780	+		Psyr_4307	0.60	-3.1
5,132,781	-		Psyr_4307	0.61	+1.2
5,132,806	+		Psyr_4307	0.63	+0.1
5,132,807	-		Psyr_4307	0.63	-3.1
5,132,807	-		Psyr_4307	0.63	+0.1
5,132,807	-		Psyr_4307	0.63	-1.3
5,132,827	-		Psyr_4307	0.65	-0.9
5,132,827	-		Psyr_4307	0.65	+1.9
5,132,854	-		Psyr_4307	0.68	-0.6
5,132,861	+		Psyr_4307	0.69	+3.7
5,132,867	+		Psyr_4307	0.70	+0.4
5,132,883	+		Psyr_4307	0.71	+0.2
5,132,883	+		Psyr_4307	0.71	+0.1
5,132,883	+		Psyr_4307	0.71	+1.5
5,132,883	+		Psyr_4307	0.71	-1.3
5,132,883	+		Psyr_4307	0.71	+0.9
5,132,883	+		Psyr_4307	0.71	+0.9
5,132,883	+		Psyr_4307	0.71	-4.0
5,132,884	-		Psyr_4307	0.72	+1.1
5,132,884	-		Psyr_4307	0.72	+1.1
5,132,884	-		Psyr_4307	0.72	-0.3
5,132,884	-		Psyr_4307	0.72	-1.0
5,132,884	-		Psyr_4307	0.72	-0.4
5,132,920	+		Psyr_4307	0.75	+3.1
5,132,982	+		Psyr_4307	0.82	-2.1
5,132,983	-		Psyr_4307	0.82	-0.4
5,132,983	-		Psyr_4307	0.82	-1.9
5,133,060	-				-0.9
5,133,066	-				+1.7
5,133,066	-				-0.5
5,133,093	-				-2.1
5,133,093	-				-2.1
5,133,108	+				+1.1
5,133,165	+				-1.5
5,133,166	-				-0.0
5,133,166	-				-2.6
5,133,180	+				-1.9
5,133,182	+				-0.3
5,133,182	+				+1.9
5,133,182	+				+1.3
5,133,182	+				+1.5
5,133,182	+				-2.3
5,133,182	+				+0.7
5,133,183	-				+1.4
5,133,183	-				-1.5
5,133,183	-				+3.1
5,133,183	-				-0.3
5,133,183	-				+2.9
5,133,183	-				+1.0
5,133,183	-				+1.7
5,133,183	-				-0.3
5,133,183	-				+1.1
5,133,183	-				+0.7
5,133,183	-				-2.7
5,133,183	-				-0.9
5,133,239	+				+1.2
5,133,240	-				-0.3
5,133,382	+				+1.9
5,133,382	+				-3.6
5,133,393	+				-0.9
5,133,414	+				+0.4
5,133,483	+				+1.6
5,133,491	+				-1.6
5,133,491	+				+0.7
5,133,491	+				+1.9
5,133,491	+				-3.0
5,133,491	+				-1.3
5,133,491	+				-1.6
5,133,491	+				+1.1
5,133,492	-				+1.7
5,133,492	-				+0.7
5,133,492	-				-1.3
5,133,500	+				-2.1
5,133,500	+				+0.5
5,133,501	-				-1.5
5,133,537	+				+0.3
5,133,537	+				-1.6
5,133,537	+				+1.3
5,133,537	+				+1.5
5,133,537	+				+2.2
5,133,538	-				-2.1
5,133,552	-				+1.5
5,133,563	+				-1.4
5,133,563	+				+0.4
5,133,563	+				+1.1
5,133,563	+				-2.3
5,133,563	+				-0.7
5,133,578	+				-2.3
5,133,578	+				+0.1
5,133,578	+				+0.9
5,133,578	+				-0.1
5,133,578	+				-1.6
5,133,578	+				-1.9
5,133,578	+				-2.6
5,133,578	+				-2.1
5,133,578	+				+0.4
5,133,578	+				+2.0
5,133,579	-				-2.4
5,133,579	-				+1.8
5,133,579	-				+3.1
5,133,579	-				-1.9
5,133,579	-				-0.4
5,133,579	-				-2.6
5,133,579	-				-0.6
5,133,579	-				-2.3
5,133,579	-				+2.5
5,133,579	-				-2.3
5,133,579	-				-1.9
5,133,622	+				-0.7
5,133,622	+				+2.3
5,133,622	+				+0.3
5,133,622	+				-3.2
5,133,622	+				+5.3
5,133,622	+				+0.2
5,133,623	-				-3.1
5,133,623	-				+2.9
5,133,623	-				-0.3
5,133,686	+				+1.2
5,133,686	+				-0.9
5,133,687	-				+0.1
5,133,700	+				+0.1
5,133,735	+				+0.3
5,133,736	-				+0.1
5,133,736	-				-1.6
5,133,736	-				+1.9
5,134,067	+		Psyr_4308	0.21	+0.7
5,134,067	+		Psyr_4308	0.21	+0.7
5,134,068	-		Psyr_4308	0.21	-0.8
5,134,068	-		Psyr_4308	0.21	+0.7
5,134,099	-		Psyr_4308	0.23	-0.3
5,134,099	-		Psyr_4308	0.23	-0.5
5,134,099	-		Psyr_4308	0.23	+2.0
5,134,125	+		Psyr_4308	0.25	+2.7
5,134,125	+		Psyr_4308	0.25	-2.7
5,134,125	+		Psyr_4308	0.25	+2.4
5,134,126	-		Psyr_4308	0.25	+1.8
5,134,126	-		Psyr_4308	0.25	+1.7
5,134,126	-		Psyr_4308	0.25	-0.9