Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4266

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
5,086,445	+		Psyr_4265	0.78	+1.5
5,086,445	+		Psyr_4265	0.78	+1.2
5,086,445	+		Psyr_4265	0.78	-0.4
5,086,445	+		Psyr_4265	0.78	+0.1
5,086,445	+		Psyr_4265	0.78	+2.5
5,086,445	+		Psyr_4265	0.78	-2.0
5,086,445	+		Psyr_4265	0.78	+1.1
5,086,445	+		Psyr_4265	0.78	-0.8
5,086,446	-		Psyr_4265	0.78	-0.9
5,086,446	-		Psyr_4265	0.78	-2.2
5,086,446	-		Psyr_4265	0.78	-0.2
5,086,484	+		Psyr_4265	0.79	+0.8
5,086,577	+		Psyr_4265	0.81	-0.8
5,086,577	+		Psyr_4265	0.81	-2.0
5,086,577	+		Psyr_4265	0.81	-1.8
5,086,577	+		Psyr_4265	0.81	-2.0
5,086,578	-		Psyr_4265	0.81	+4.6
5,086,578	-		Psyr_4265	0.81	+1.3
5,086,578	-		Psyr_4265	0.81	-1.2
5,086,578	-		Psyr_4265	0.81	-0.5
5,086,854	+		Psyr_4265	0.88	-1.9
5,086,854	+		Psyr_4265	0.88	+0.6
5,086,855	-		Psyr_4265	0.88	+0.5
5,086,855	-		Psyr_4265	0.88	+3.1
5,086,855	-		Psyr_4265	0.88	+0.4
5,086,855	-		Psyr_4265	0.88	-0.2
5,086,855	-		Psyr_4265	0.88	+1.1
5,086,855	-		Psyr_4265	0.88	+4.8
5,086,945	-				-1.8
5,087,003	+				-0.2
5,087,018	+				-2.2
5,087,019	-				-1.7
5,087,019	-				+2.5
5,087,222	+				+2.8
5,087,356	+				-1.5
5,087,356	+				+0.6
5,087,356	+				+0.2
5,087,356	+				+1.0
5,087,356	+				+2.1
5,087,356	+				+0.4
5,087,357	-				+0.0
5,087,357	-				+0.8
5,087,362	+				-1.4
5,087,363	-				+0.8
5,087,363	-				+0.1
5,087,363	-				+0.2
5,087,363	-				-0.8
5,087,363	-				+0.6
5,087,363	-				-1.8
5,087,409	+				-0.9
5,087,436	-				+2.3
5,087,450	+				-0.2
5,087,450	+				+0.8
5,087,450	+				+2.1
5,087,451	-				-0.9
5,087,451	-				-1.2
5,087,451	-				-2.4
5,087,451	-				-1.2
5,087,540	+		Psyr_4266	0.10	-0.3
5,087,540	+		Psyr_4266	0.10	+0.6
5,087,541	-		Psyr_4266	0.10	+1.4
5,087,814	+		Psyr_4266	0.38	-0.1
5,087,815	-		Psyr_4266	0.38	+1.7
5,087,839	+		Psyr_4266	0.40	+2.7
5,087,979	+		Psyr_4266	0.54	-2.2
5,087,979	+		Psyr_4266	0.54	-1.5
5,087,980	-		Psyr_4266	0.54	+0.8
5,087,980	-		Psyr_4266	0.54	-3.6
5,087,980	-		Psyr_4266	0.54	-1.2
5,088,021	+		Psyr_4266	0.59	+1.7
5,088,022	-		Psyr_4266	0.59	+1.5
5,088,173	+		Psyr_4266	0.74	+1.5
5,088,214	+		Psyr_4266	0.78	+0.3
5,088,214	+		Psyr_4266	0.78	+0.9
5,088,214	+		Psyr_4266	0.78	+0.8
5,088,214	+		Psyr_4266	0.78	+2.1
5,088,214	+		Psyr_4266	0.78	+2.0
5,088,215	-		Psyr_4266	0.78	+4.2
5,088,300	+		Psyr_4266	0.87	-1.2
5,088,300	+		Psyr_4266	0.87	+1.5
5,088,300	+		Psyr_4266	0.87	+1.5
5,088,300	+		Psyr_4266	0.87	-1.8
5,088,300	+		Psyr_4266	0.87	+0.3
5,088,300	+		Psyr_4266	0.87	-2.0
5,088,300	+		Psyr_4266	0.87	-1.4
5,088,300	+		Psyr_4266	0.87	+1.1
5,088,300	+		Psyr_4266	0.87	+1.2
5,088,300	+		Psyr_4266	0.87	+3.0
5,088,301	-		Psyr_4266	0.87	+0.1
5,088,301	-		Psyr_4266	0.87	-2.2
5,088,301	-		Psyr_4266	0.87	-0.2
5,088,301	-		Psyr_4266	0.87	-1.2
5,088,301	-		Psyr_4266	0.87	-0.4
5,088,301	-		Psyr_4266	0.87	+0.2
5,088,301	-		Psyr_4266	0.87	+3.8
5,088,301	-		Psyr_4266	0.87	-1.5
5,088,301	-		Psyr_4266	0.87	-2.2
5,088,301	-		Psyr_4266	0.87	+0.5
5,088,301	-		Psyr_4266	0.87	-1.5
5,088,301	-		Psyr_4266	0.87	+0.8
5,088,301	-		Psyr_4266	0.87	-0.8
5,088,301	-		Psyr_4266	0.87	-0.8
5,088,301	-		Psyr_4266	0.87	-1.2
5,088,301	-		Psyr_4266	0.87	+2.3
5,088,326	+		Psyr_4266	0.89	+2.2
5,088,326	+		Psyr_4266	0.89	-2.8
5,088,327	-		Psyr_4266	0.89	+0.7
5,088,327	-		Psyr_4266	0.89	-0.4
5,088,327	-		Psyr_4266	0.89	+0.8
5,088,327	-		Psyr_4266	0.89	+0.3
5,088,327	-		Psyr_4266	0.89	+1.1
5,088,366	+				-2.0
5,088,366	+				+0.7
5,088,366	+				+2.3
5,088,366	+				-0.8
5,088,367	-				+3.2
5,088,409	+				-1.4
5,088,409	+				+0.2
5,088,410	-				-1.5
5,088,410	-				+2.0
5,088,410	-				-0.2
5,088,445	+				+3.2
5,088,469	+				-1.5
5,088,469	+				+2.5
5,088,512	+				+1.5
5,088,512	+				+0.3
5,088,513	-				+2.1
5,088,525	-				+1.3
5,088,537	-				+2.0
5,088,537	-				+0.4
5,088,712	+		Psyr_4267	0.16	-2.4
5,088,712	+		Psyr_4267	0.16	-0.8
5,088,712	+		Psyr_4267	0.16	+0.3
5,088,797	-		Psyr_4267	0.25	-2.2
5,089,010	+		Psyr_4267	0.49	+1.8
5,089,010	+		Psyr_4267	0.49	-2.6
5,089,010	+		Psyr_4267	0.49	-0.2
5,089,010	+		Psyr_4267	0.49	-2.8
5,089,011	-		Psyr_4267	0.49	-2.6
5,089,011	-		Psyr_4267	0.49	+2.2
5,089,105	+		Psyr_4267	0.60	-1.6
5,089,105	+		Psyr_4267	0.60	-0.8
5,089,105	+		Psyr_4267	0.60	+0.8
5,089,105	+		Psyr_4267	0.60	-2.0
5,089,105	+		Psyr_4267	0.60	+1.9
5,089,105	+		Psyr_4267	0.60	-0.8
5,089,106	-		Psyr_4267	0.60	+1.2
5,089,106	-		Psyr_4267	0.60	+1.0
5,089,106	-		Psyr_4267	0.60	-1.0
5,089,153	-		Psyr_4267	0.65	+1.4
5,089,154	+		Psyr_4267	0.65	-2.4
5,089,155	-		Psyr_4267	0.65	+0.2
5,089,155	-		Psyr_4267	0.65	-2.2
5,089,155	-		Psyr_4267	0.65	-0.4
5,089,155	-		Psyr_4267	0.65	-1.5
5,089,155	-		Psyr_4267	0.65	+0.8
5,089,198	+		Psyr_4267	0.70	+1.6
5,089,261	+		Psyr_4267	0.77	+2.9
5,089,261	+		Psyr_4267	0.77	-0.3
5,089,261	+		Psyr_4267	0.77	-2.2
5,089,262	-		Psyr_4267	0.77	-1.8
5,089,262	-		Psyr_4267	0.77	+3.0
5,089,262	-		Psyr_4267	0.77	-0.5
5,089,262	-		Psyr_4267	0.77	-1.2
5,089,262	-		Psyr_4267	0.77	-2.0
5,089,348	+		Psyr_4267	0.87	+1.4
5,089,348	+		Psyr_4267	0.87	-2.2
5,089,348	+		Psyr_4267	0.87	-2.4
5,089,349	-		Psyr_4267	0.87	+1.7
5,089,349	-		Psyr_4267	0.87	+2.7
5,089,393	+				-0.7
5,089,394	-				-0.2
5,089,394	-				-1.3
5,089,429	+				-1.2
5,089,430	-				+1.5
5,089,430	-				+1.4