Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4082

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
4,866,951	+		Psyr_4081	0.61	-0.1
4,867,028	+		Psyr_4081	0.64	-1.2
4,867,030	+		Psyr_4081	0.65	-0.2
4,867,030	+		Psyr_4081	0.65	-2.0
4,867,030	+		Psyr_4081	0.65	+4.7
4,867,030	+		Psyr_4081	0.65	+1.4
4,867,030	+		Psyr_4081	0.65	+1.0
4,867,031	-		Psyr_4081	0.65	-3.6
4,867,031	-		Psyr_4081	0.65	+1.4
4,867,043	+		Psyr_4081	0.65	+1.4
4,867,043	+		Psyr_4081	0.65	-1.6
4,867,043	+		Psyr_4081	0.65	+2.4
4,867,043	+		Psyr_4081	0.65	-0.6
4,867,043	+		Psyr_4081	0.65	-1.0
4,867,044	-		Psyr_4081	0.65	-1.6
4,867,044	-		Psyr_4081	0.65	-0.8
4,867,044	-		Psyr_4081	0.65	+0.3
4,867,044	-		Psyr_4081	0.65	+1.9
4,867,048	+		Psyr_4081	0.65	-0.0
4,867,071	+		Psyr_4081	0.67	+2.5
4,867,072	-		Psyr_4081	0.67	+4.1
4,867,092	-		Psyr_4081	0.68	+1.6
4,867,212	+		Psyr_4081	0.73	-1.4
4,867,213	-		Psyr_4081	0.73	-3.2
4,867,237	+		Psyr_4081	0.75	+2.9
4,867,256	-		Psyr_4081	0.76	+4.3
4,867,360	+		Psyr_4081	0.81	+0.8
4,867,360	+		Psyr_4081	0.81	-0.4
4,867,360	+		Psyr_4081	0.81	-3.0
4,867,360	+		Psyr_4081	0.81	-1.8
4,867,360	+		Psyr_4081	0.81	+1.3
4,867,360	+		Psyr_4081	0.81	-2.0
4,867,361	-		Psyr_4081	0.81	-1.8
4,867,361	-		Psyr_4081	0.81	+1.3
4,867,361	-		Psyr_4081	0.81	-0.2
4,867,363	+		Psyr_4081	0.81	-1.6
4,867,363	+		Psyr_4081	0.81	+0.8
4,867,363	+		Psyr_4081	0.81	-1.1
4,867,364	-		Psyr_4081	0.81	+0.6
4,867,364	-		Psyr_4081	0.81	+0.2
4,867,364	-		Psyr_4081	0.81	+1.3
4,867,403	+		Psyr_4081	0.83	+2.1
4,867,430	+		Psyr_4081	0.84	-2.0
4,867,430	+		Psyr_4081	0.84	+0.6
4,867,431	-		Psyr_4081	0.84	-0.2
4,867,431	-		Psyr_4081	0.84	-2.6
4,867,431	-		Psyr_4081	0.84	+1.3
4,867,431	-		Psyr_4081	0.84	-0.6
4,867,431	-		Psyr_4081	0.84	-1.8
4,867,431	-		Psyr_4081	0.84	-0.2
4,867,434	+		Psyr_4081	0.84	+0.5
4,867,434	+		Psyr_4081	0.84	-2.9
4,867,435	-		Psyr_4081	0.84	+0.8
4,867,435	-		Psyr_4081	0.84	+2.3
4,867,435	-		Psyr_4081	0.84	+0.6
4,867,600	+				-0.5
4,867,601	-				+2.1
4,867,659	+				-1.1
4,867,660	-				-2.2
4,867,693	+				+0.5
4,867,693	+				-0.7
4,867,694	-				-0.2
4,867,799	+				-0.2
4,867,800	-				+2.4
4,867,803	+				+3.3
4,867,803	+				-0.7
4,867,804	-				+2.5
4,867,812	+				-2.6
4,867,813	-				+1.4
4,867,854	+				-1.6
4,867,854	+				+1.4
4,867,854	+				-2.4
4,867,854	+				-2.4
4,867,854	+				+1.8
4,867,855	-				-0.2
4,867,855	-				+1.1
4,867,855	-				-1.2
4,867,856	+				+0.6
4,867,857	-				-2.8
4,867,857	-				+2.7
4,867,860	+				-1.7
4,867,860	+				+1.0
4,867,860	+				-0.6
4,867,860	+				+0.1
4,867,860	+				-0.5
4,867,860	+				+1.8
4,867,860	+				-2.0
4,867,861	-				-3.0
4,867,896	+				-0.8
4,867,896	+				-0.8
4,867,896	+				+3.7
4,867,897	-				+0.2
4,867,932	+				-1.0
4,867,933	+				-0.6
4,867,944	+				-1.2
4,867,945	-				-0.2
4,867,947	+				-2.4
4,867,948	-				-0.1
4,867,952	+				+0.8
4,867,952	+				-1.6
4,867,952	+				-1.8
4,867,952	+				-0.2
4,867,953	-				+2.6
4,867,953	-				+0.4
4,867,953	-				+0.3
4,867,953	-				-0.5
4,867,953	-				-2.4
4,868,012	-				-1.8
4,868,012	-				+0.0
4,868,101	-		Psyr_4082	0.14	+0.8
4,868,101	-		Psyr_4082	0.14	-2.0
4,868,152	+		Psyr_4082	0.17	-0.8
4,868,169	-		Psyr_4082	0.19	-0.0
4,868,189	+		Psyr_4082	0.20	-1.8
4,868,190	-		Psyr_4082	0.20	-2.4
4,868,190	-		Psyr_4082	0.20	-2.3
4,868,276	+		Psyr_4082	0.25	+3.1
4,868,319	-		Psyr_4082	0.28	+0.2
4,868,376	+		Psyr_4082	0.32	+0.9
4,868,436	+		Psyr_4082	0.36	-2.6
4,868,437	-		Psyr_4082	0.36	-0.2
4,868,512	+		Psyr_4082	0.41	-1.8
4,868,521	+		Psyr_4082	0.41	-1.2
4,868,521	+		Psyr_4082	0.41	-2.4
4,868,521	+		Psyr_4082	0.41	+1.2
4,868,521	+		Psyr_4082	0.41	-1.2
4,868,522	-		Psyr_4082	0.41	-0.2
4,868,522	-		Psyr_4082	0.41	+0.5
4,868,522	-		Psyr_4082	0.41	-0.2
4,868,525	+		Psyr_4082	0.41	-1.6
4,868,630	+		Psyr_4082	0.48	+0.8
4,868,631	-		Psyr_4082	0.48	+2.5
4,868,642	+		Psyr_4082	0.49	+0.2
4,868,770	+		Psyr_4082	0.57	+1.5
4,868,770	+		Psyr_4082	0.57	+2.0
4,868,770	+		Psyr_4082	0.57	+1.6
4,868,770	+		Psyr_4082	0.57	-0.8
4,868,770	+		Psyr_4082	0.57	+0.4
4,869,194	+		Psyr_4082	0.84	-1.0
4,869,443	-				+1.2
4,869,712	+				-2.4
4,869,713	-				+1.6
4,869,713	-				-2.4
4,869,770	+				-2.6
4,869,770	+				+1.1
4,869,770	+				+0.8
4,869,770	+				-1.2
4,869,770	+				-0.2
4,869,771	-				-3.8
4,869,771	-				+1.4
4,869,815	+				-2.0
4,869,816	-				+2.9
4,869,826	+				-1.6
4,869,826	+				+2.7
4,869,826	+				-0.8
4,869,826	+				+0.2
4,869,826	+				-1.4
4,869,826	+				-2.2
4,869,826	+				-2.9
4,869,827	-				-1.6
4,869,827	-				-1.6
4,869,827	-				-1.6
4,869,827	-				+3.2
4,869,827	-				-2.2
4,869,876	-				+1.9
4,869,876	-				+3.6
4,869,878	+				-1.2
4,869,878	+				-0.8
4,869,879	-				+1.4
4,869,883	+				-2.6
4,869,884	-				-2.4
4,869,884	-				-0.8
4,869,908	+		Psyr_4084	0.10	-2.9
4,869,909	-		Psyr_4084	0.10	+1.0
4,869,941	-		Psyr_4084	0.12	+0.8
4,869,962	+		Psyr_4084	0.14	+2.5
4,869,962	+		Psyr_4084	0.14	-1.6
4,869,963	-		Psyr_4084	0.14	+1.8
4,870,026	+		Psyr_4084	0.18	-1.2
4,870,041	-		Psyr_4084	0.19	+1.4
4,870,042	+		Psyr_4084	0.19	-1.8
4,870,063	-		Psyr_4084	0.20	+1.8
4,870,095	+		Psyr_4084	0.22	-0.8
4,870,101	+		Psyr_4084	0.23	+3.3
4,870,107	+		Psyr_4084	0.23	+1.0
4,870,109	+		Psyr_4084	0.23	+3.4
4,870,110	-		Psyr_4084	0.23	+5.1
4,870,110	-		Psyr_4084	0.23	-0.1
4,870,237	-		Psyr_4084	0.31	+0.6
4,870,306	-		Psyr_4084	0.36	-2.9
4,870,364	+		Psyr_4084	0.40	+2.1
4,870,364	+		Psyr_4084	0.40	-0.0
4,870,364	+		Psyr_4084	0.40	-1.1
4,870,385	+		Psyr_4084	0.41	+0.8