Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4033

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
4,803,245	+		Psyr_4032	0.69	+1.2
4,803,308	+		Psyr_4032	0.71	+1.0
4,803,408	+		Psyr_4032	0.75	+1.8
4,803,409	-		Psyr_4032	0.75	+0.7
4,803,409	-		Psyr_4032	0.75	+1.4
4,803,587	+		Psyr_4032	0.81	-1.3
4,803,648	+		Psyr_4032	0.84	+1.6
4,803,674	+		Psyr_4032	0.85	-2.6
4,803,674	+		Psyr_4032	0.85	-3.4
4,803,675	-		Psyr_4032	0.85	-1.6
4,803,675	-		Psyr_4032	0.85	-1.2
4,803,737	+		Psyr_4032	0.87	-0.8
4,803,738	-		Psyr_4032	0.87	+1.5
4,804,068	+				+0.7
4,804,069	-				+4.0
4,804,116	+				-1.3
4,804,125	+				+1.4
4,804,125	+				+0.2
4,804,126	-				+0.4
4,804,181	+				-1.8
4,804,181	+				-0.0
4,804,181	+				-0.0
4,804,181	+				+1.4
4,804,181	+				-0.0
4,804,181	+				-0.0
4,804,181	+				+2.7
4,804,181	+				+3.6
4,804,182	-				+3.1
4,804,182	-				+0.3
4,804,182	-				+2.4
4,804,190	+				+0.7
4,804,191	-				+2.6
4,804,231	+				-2.7
4,804,231	+				+0.9
4,804,231	+				-2.6
4,804,231	+				+2.5
4,804,232	-				-0.4
4,804,232	-				+0.4
4,804,232	-				-2.6
4,804,232	-				+0.7
4,804,232	-				+1.7
4,804,232	-				-1.1
4,804,232	-				+1.5
4,804,235	+				+0.4
4,804,235	+				-2.1
4,804,235	+				+2.3
4,804,235	+				-2.8
4,804,235	+				+1.4
4,804,235	+				+3.1
4,804,236	-				+2.4
4,804,240	+				-1.0
4,804,241	-				-0.5
4,804,241	-				-1.0
4,804,241	-				-1.3
4,804,241	-				+2.1
4,804,307	+				+1.5
4,804,308	-				+2.3
4,804,308	-				-2.6
4,804,316	+				+1.6
4,804,404	+				-0.3
4,804,404	+				+0.7
4,804,405	-				+1.5
4,804,405	-				+2.0
4,804,443	-				-1.0
4,804,458	+				+0.6
4,804,504	-				-2.6
4,804,504	-				+2.1
4,804,543	-		Psyr_4033	0.11	-0.3
4,804,583	+		Psyr_4033	0.13	-0.8
4,804,583	+		Psyr_4033	0.13	-0.3
4,804,583	+		Psyr_4033	0.13	+2.5
4,804,583	+		Psyr_4033	0.13	+0.2
4,804,584	-		Psyr_4033	0.13	-0.8
4,804,585	+		Psyr_4033	0.13	-0.8
4,804,585	+		Psyr_4033	0.13	+0.4
4,804,585	+		Psyr_4033	0.13	-1.3
4,804,585	+		Psyr_4033	0.13	+2.4
4,804,585	+		Psyr_4033	0.13	-1.4
4,804,586	-		Psyr_4033	0.13	-0.3
4,804,586	-		Psyr_4033	0.13	+1.7
4,804,586	-		Psyr_4033	0.13	+4.0
4,804,592	-		Psyr_4033	0.13	+0.5
4,804,638	+		Psyr_4033	0.14	+2.5
4,804,690	-		Psyr_4033	0.16	+0.7
4,804,719	-		Psyr_4033	0.17	-1.7
4,804,783	+		Psyr_4033	0.20	-2.3
4,804,783	+		Psyr_4033	0.20	+0.7
4,804,784	-		Psyr_4033	0.20	-1.3
4,804,850	+		Psyr_4033	0.22	+4.1
4,804,850	+		Psyr_4033	0.22	-2.8
4,804,850	+		Psyr_4033	0.22	-1.8
4,804,850	+		Psyr_4033	0.22	+0.3
4,804,850	+		Psyr_4033	0.22	-1.0
4,804,850	+		Psyr_4033	0.22	-0.8
4,804,850	+		Psyr_4033	0.22	-0.3
4,804,850	+		Psyr_4033	0.22	+0.3
4,804,851	-		Psyr_4033	0.22	+3.7
4,804,851	-		Psyr_4033	0.22	+5.4
4,804,851	-		Psyr_4033	0.22	+2.1
4,804,851	-		Psyr_4033	0.22	-2.7
4,804,851	-		Psyr_4033	0.22	+0.7
4,804,851	-		Psyr_4033	0.22	-2.1
4,804,851	-		Psyr_4033	0.22	-0.8
4,804,851	-		Psyr_4033	0.22	-1.3
4,804,851	-		Psyr_4033	0.22	+3.5
4,804,851	-		Psyr_4033	0.22	+1.0
4,804,851	-		Psyr_4033	0.22	-1.3
4,804,851	-		Psyr_4033	0.22	+1.8
4,804,907	+		Psyr_4033	0.24	-1.8
4,804,907	+		Psyr_4033	0.24	-0.1
4,804,930	+		Psyr_4033	0.25	+3.5
4,804,930	+		Psyr_4033	0.25	-2.1
4,804,967	+		Psyr_4033	0.26	-1.6
4,804,968	-		Psyr_4033	0.26	-0.3
4,804,968	-		Psyr_4033	0.26	-0.8
4,805,074	+		Psyr_4033	0.30	+0.5
4,805,097	+		Psyr_4033	0.31	+3.5
4,805,098	-		Psyr_4033	0.31	-1.6
4,805,100	-		Psyr_4033	0.31	-1.8
4,805,100	-		Psyr_4033	0.31	+0.2
4,805,105	+		Psyr_4033	0.31	-1.0
4,805,105	+		Psyr_4033	0.31	+2.4
4,805,138	-		Psyr_4033	0.32	+3.1
4,805,154	+		Psyr_4033	0.33	-0.8
4,805,154	+		Psyr_4033	0.33	-3.4
4,805,155	-		Psyr_4033	0.33	-0.1
4,805,155	-		Psyr_4033	0.33	+0.7
4,805,155	-		Psyr_4033	0.33	-0.8
4,805,203	+		Psyr_4033	0.35	+1.7
4,805,203	+		Psyr_4033	0.35	+1.9
4,805,204	-		Psyr_4033	0.35	+1.1
4,805,206	+		Psyr_4033	0.35	-1.6
4,805,206	+		Psyr_4033	0.35	-0.3
4,805,221	+		Psyr_4033	0.35	-1.8
4,805,221	+		Psyr_4033	0.35	-1.3
4,805,221	+		Psyr_4033	0.35	-0.3
4,805,222	-		Psyr_4033	0.35	+3.3
4,805,224	+		Psyr_4033	0.35	+1.2
4,805,224	+		Psyr_4033	0.35	+1.1
4,805,273	-		Psyr_4033	0.37	+0.5
4,805,273	-		Psyr_4033	0.37	-1.1
4,805,330	-		Psyr_4033	0.39	-0.8
4,805,330	-		Psyr_4033	0.39	-1.6
4,805,623	+		Psyr_4033	0.49	+4.1
4,805,623	+		Psyr_4033	0.49	+0.7
4,805,623	+		Psyr_4033	0.49	-1.6
4,805,624	-		Psyr_4033	0.49	+1.5
4,805,629	+		Psyr_4033	0.50	-0.0
4,805,629	+		Psyr_4033	0.50	-1.6
4,805,629	+		Psyr_4033	0.50	+0.4
4,805,629	+		Psyr_4033	0.50	-1.1
4,805,630	-		Psyr_4033	0.50	+2.9
4,805,630	-		Psyr_4033	0.50	+1.9
4,805,630	-		Psyr_4033	0.50	-2.4
4,805,630	-		Psyr_4033	0.50	+2.8
4,805,885	-		Psyr_4033	0.59	+1.5
4,805,891	-		Psyr_4033	0.59	+0.7
4,805,891	-		Psyr_4033	0.59	+2.6
4,805,891	-		Psyr_4033	0.59	-2.0
4,805,891	-		Psyr_4033	0.59	+0.7
4,805,903	-		Psyr_4033	0.59	-1.6
4,805,903	-		Psyr_4033	0.59	-1.3
4,805,903	-		Psyr_4033	0.59	+2.7
4,805,903	-		Psyr_4033	0.59	+1.1
4,806,013	+		Psyr_4033	0.63	+0.4
4,806,013	+		Psyr_4033	0.63	+1.7
4,806,013	+		Psyr_4033	0.63	-1.1
4,806,014	-		Psyr_4033	0.63	+1.4
4,806,014	-		Psyr_4033	0.63	-0.3
4,806,026	-		Psyr_4033	0.64	-3.0
4,806,100	-		Psyr_4033	0.66	-2.3
4,806,100	-		Psyr_4033	0.66	-1.3
4,806,265	+		Psyr_4033	0.72	+0.3
4,806,545	-		Psyr_4033	0.82	-1.4
4,806,605	+		Psyr_4033	0.84	+2.9
4,806,631	+		Psyr_4033	0.85	+1.3
4,806,631	+		Psyr_4033	0.85	+0.7
4,806,631	+		Psyr_4033	0.85	+0.7
4,806,631	+		Psyr_4033	0.85	+2.6
4,806,694	+		Psyr_4033	0.87	-2.0
4,806,695	-		Psyr_4033	0.87	-1.3
4,806,695	-		Psyr_4033	0.87	+2.3
4,806,739	-		Psyr_4033	0.89	-0.0
4,806,856	+				-1.3
4,806,856	+				+2.1
4,806,856	+				+1.2
4,806,857	-				-1.6
4,806,857	-				-1.3
4,806,857	-				-1.8
4,806,919	+				-1.6
4,806,920	-				+2.2
4,806,920	-				+1.7
4,806,967	+				-1.0
4,807,026	-				-3.6
4,807,091	+				-0.8
4,807,091	+				-1.8
4,807,091	+				+0.5
4,807,170	-				-0.5
4,807,171	+				+0.7
4,807,171	+				-3.6
4,807,172	-				-0.3
4,807,172	-				+1.2
4,807,172	-				-1.8
4,807,205	-				-0.3
4,807,253	+				+0.2
4,807,333	+				+0.7
4,807,333	+				+0.7
4,807,334	-				-2.1
4,807,481	+				-1.6
4,807,481	+				+2.7
4,807,481	+				-0.7
4,807,481	+				-2.6
4,807,481	+				+2.3
4,807,482	-				-2.1
4,807,482	-				-0.1
4,807,482	-				+2.3
4,807,622	-		Psyr_4034	0.11	-0.8
4,807,691	-		Psyr_4034	0.13	-0.3
4,807,716	+		Psyr_4034	0.14	-0.3
4,807,717	-		Psyr_4034	0.14	-0.6
4,807,857	-		Psyr_4034	0.19	-1.3
4,807,882	+		Psyr_4034	0.19	+1.5
4,807,883	-		Psyr_4034	0.20	+2.0
4,807,883	-		Psyr_4034	0.20	-2.4
4,807,886	+		Psyr_4034	0.20	-0.7
4,807,886	+		Psyr_4034	0.20	-0.8
4,807,886	+		Psyr_4034	0.20	+1.3
4,807,886	+		Psyr_4034	0.20	+1.6
4,807,886	+		Psyr_4034	0.20	+2.5
4,807,886	+		Psyr_4034	0.20	+0.0
4,807,887	-		Psyr_4034	0.20	-1.6
4,807,887	-		Psyr_4034	0.20	+0.7
4,807,887	-		Psyr_4034	0.20	+2.5
4,807,887	-		Psyr_4034	0.20	+0.0
4,807,902	+		Psyr_4034	0.20	+0.0
4,807,903	-		Psyr_4034	0.20	+1.3
4,807,903	-		Psyr_4034	0.20	+0.5
4,807,903	-		Psyr_4034	0.20	+1.9
4,807,937	+		Psyr_4034	0.21	+1.3
4,807,937	+		Psyr_4034	0.21	+1.2
4,807,938	-		Psyr_4034	0.21	+2.3
4,807,938	-		Psyr_4034	0.21	-2.6
4,807,938	-		Psyr_4034	0.21	+0.3
4,807,938	-		Psyr_4034	0.21	+0.7
4,807,938	-		Psyr_4034	0.21	-1.3
4,807,942	-		Psyr_4034	0.22	-1.6
4,807,942	-		Psyr_4034	0.22	+3.6
4,807,983	+		Psyr_4034	0.23	-0.5
4,807,983	+		Psyr_4034	0.23	-2.6
4,807,984	-		Psyr_4034	0.23	-1.3