Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3313 and Psyr_3314 are separated by 65 nucleotides Psyr_3314 and Psyr_3315 are separated by 83 nucleotides
Psyr_3313: Psyr_3313 - C4-dicarboxylate transporter/malic acid transport protein, at 3,965,087 to 3,966,247
_3313
Psyr_3314: Psyr_3314 - conserved hypothetical protein, at 3,966,313 to 3,967,245
_3314
Psyr_3315: Psyr_3315 - conserved hypothetical protein, at 3,967,329 to 3,967,673
_3315
Position (kb)
3966
3967
3968 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3965.315 kb on + strand, within Psyr_3313 at 3965.315 kb on + strand, within Psyr_3313 at 3965.315 kb on + strand, within Psyr_3313 at 3965.315 kb on + strand, within Psyr_3313 at 3965.315 kb on + strand, within Psyr_3313 at 3965.315 kb on + strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.316 kb on - strand, within Psyr_3313 at 3965.334 kb on + strand, within Psyr_3313 at 3965.693 kb on + strand, within Psyr_3313 at 3965.693 kb on + strand, within Psyr_3313 at 3965.693 kb on + strand, within Psyr_3313 at 3965.693 kb on + strand, within Psyr_3313 at 3965.693 kb on + strand, within Psyr_3313 at 3965.693 kb on + strand, within Psyr_3313 at 3965.694 kb on - strand, within Psyr_3313 at 3965.694 kb on - strand, within Psyr_3313 at 3965.694 kb on - strand, within Psyr_3313 at 3965.694 kb on - strand, within Psyr_3313 at 3965.694 kb on - strand, within Psyr_3313 at 3965.694 kb on - strand, within Psyr_3313 at 3965.694 kb on - strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3965.697 kb on + strand, within Psyr_3313 at 3966.059 kb on + strand, within Psyr_3313 at 3966.059 kb on + strand, within Psyr_3313 at 3966.059 kb on + strand, within Psyr_3313 at 3966.060 kb on - strand, within Psyr_3313 at 3966.060 kb on - strand, within Psyr_3313 at 3966.168 kb on + strand at 3966.169 kb on - strand at 3966.172 kb on + strand at 3966.172 kb on + strand at 3966.172 kb on + strand at 3966.172 kb on + strand at 3966.172 kb on + strand at 3966.172 kb on + strand at 3966.172 kb on + strand at 3966.172 kb on + strand at 3966.173 kb on - strand at 3966.173 kb on - strand at 3966.173 kb on - strand at 3966.261 kb on + strand at 3966.261 kb on + strand at 3966.262 kb on - strand at 3966.262 kb on - strand at 3966.262 kb on - strand at 3966.291 kb on - strand at 3966.392 kb on - strand at 3966.443 kb on - strand, within Psyr_3314 at 3966.443 kb on - strand, within Psyr_3314 at 3966.496 kb on + strand, within Psyr_3314 at 3966.496 kb on + strand, within Psyr_3314 at 3966.574 kb on + strand, within Psyr_3314 at 3966.574 kb on + strand, within Psyr_3314 at 3966.694 kb on + strand, within Psyr_3314 at 3966.902 kb on - strand, within Psyr_3314 at 3966.902 kb on - strand, within Psyr_3314 at 3966.902 kb on - strand, within Psyr_3314 at 3966.902 kb on - strand, within Psyr_3314 at 3966.939 kb on + strand, within Psyr_3314 at 3967.018 kb on + strand, within Psyr_3314 at 3967.018 kb on + strand, within Psyr_3314 at 3967.018 kb on + strand, within Psyr_3314 at 3967.018 kb on + strand, within Psyr_3314 at 3967.018 kb on + strand, within Psyr_3314 at 3967.018 kb on + strand, within Psyr_3314 at 3967.019 kb on - strand, within Psyr_3314 at 3967.019 kb on - strand, within Psyr_3314 at 3967.019 kb on - strand, within Psyr_3314 at 3967.019 kb on - strand, within Psyr_3314 at 3967.019 kb on - strand, within Psyr_3314 at 3967.021 kb on + strand, within Psyr_3314 at 3967.022 kb on - strand at 3967.075 kb on + strand, within Psyr_3314 at 3967.075 kb on + strand, within Psyr_3314 at 3967.105 kb on + strand, within Psyr_3314 at 3967.106 kb on - strand, within Psyr_3314 at 3967.106 kb on - strand, within Psyr_3314 at 3967.106 kb on - strand, within Psyr_3314 at 3967.111 kb on + strand, within Psyr_3314 at 3967.111 kb on + strand, within Psyr_3314 at 3967.111 kb on + strand, within Psyr_3314 at 3967.111 kb on + strand, within Psyr_3314 at 3967.111 kb on + strand, within Psyr_3314 at 3967.111 kb on + strand, within Psyr_3314 at 3967.111 kb on + strand, within Psyr_3314 at 3967.112 kb on - strand, within Psyr_3314 at 3967.112 kb on - strand, within Psyr_3314 at 3967.112 kb on - strand, within Psyr_3314 at 3967.112 kb on - strand, within Psyr_3314 at 3967.112 kb on - strand, within Psyr_3314 at 3967.112 kb on - strand, within Psyr_3314 at 3967.299 kb on + strand at 3967.356 kb on + strand at 3967.356 kb on + strand at 3967.357 kb on - strand at 3967.403 kb on + strand, within Psyr_3315 at 3967.409 kb on + strand, within Psyr_3315 at 3967.682 kb on + strand at 3967.824 kb on + strand at 3967.875 kb on - strand at 3967.875 kb on - strand at 3967.879 kb on + strand at 3967.879 kb on + strand at 3967.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 3,965,315 + Psyr_3313 0.20 -1.2 3,965,315 + Psyr_3313 0.20 -1.8 3,965,315 + Psyr_3313 0.20 -0.4 3,965,315 + Psyr_3313 0.20 -2.2 3,965,315 + Psyr_3313 0.20 +1.8 3,965,315 + Psyr_3313 0.20 -2.6 3,965,316 - Psyr_3313 0.20 -0.9 3,965,316 - Psyr_3313 0.20 +0.9 3,965,316 - Psyr_3313 0.20 +2.2 3,965,316 - Psyr_3313 0.20 -1.4 3,965,316 - Psyr_3313 0.20 -2.6 3,965,316 - Psyr_3313 0.20 +0.6 3,965,316 - Psyr_3313 0.20 -1.4 3,965,316 - Psyr_3313 0.20 -1.8 3,965,334 + Psyr_3313 0.21 -0.8 3,965,693 + Psyr_3313 0.52 +2.1 3,965,693 + Psyr_3313 0.52 -2.2 3,965,693 + Psyr_3313 0.52 -0.6 3,965,693 + Psyr_3313 0.52 +0.6 3,965,693 + Psyr_3313 0.52 -1.1 3,965,693 + Psyr_3313 0.52 -0.4 3,965,694 - Psyr_3313 0.52 +1.7 3,965,694 - Psyr_3313 0.52 +1.7 3,965,694 - Psyr_3313 0.52 +0.6 3,965,694 - Psyr_3313 0.52 +1.9 3,965,694 - Psyr_3313 0.52 +3.2 3,965,694 - Psyr_3313 0.52 -0.4 3,965,694 - Psyr_3313 0.52 +1.1 3,965,697 + Psyr_3313 0.53 -1.4 3,965,697 + Psyr_3313 0.53 +0.6 3,965,697 + Psyr_3313 0.53 -0.6 3,965,697 + Psyr_3313 0.53 -3.4 3,965,697 + Psyr_3313 0.53 +0.6 3,965,697 + Psyr_3313 0.53 -0.7 3,965,697 + Psyr_3313 0.53 +1.2 3,965,697 + Psyr_3313 0.53 -0.4 3,965,697 + Psyr_3313 0.53 +0.6 3,965,697 + Psyr_3313 0.53 +0.1 3,966,059 + Psyr_3313 0.84 -0.4 3,966,059 + Psyr_3313 0.84 +0.2 3,966,059 + Psyr_3313 0.84 -1.9 3,966,060 - Psyr_3313 0.84 -0.2 3,966,060 - Psyr_3313 0.84 -0.4 3,966,168 + +0.9 3,966,169 - -0.6 3,966,172 + -0.2 3,966,172 + +1.8 3,966,172 + -1.2 3,966,172 + -1.9 3,966,172 + +0.4 3,966,172 + -1.2 3,966,172 + +2.0 3,966,172 + -1.0 3,966,173 - -0.2 3,966,173 - -1.0 3,966,173 - -2.0 3,966,261 + -1.0 3,966,261 + +0.6 3,966,262 - -1.4 3,966,262 - -2.2 3,966,262 - +2.7 3,966,291 - -0.4 3,966,392 - +0.9 3,966,443 - Psyr_3314 0.14 -1.0 3,966,443 - Psyr_3314 0.14 +0.6 3,966,496 + Psyr_3314 0.20 -1.4 3,966,496 + Psyr_3314 0.20 +1.7 3,966,574 + Psyr_3314 0.28 +1.3 3,966,574 + Psyr_3314 0.28 -2.6 3,966,694 + Psyr_3314 0.41 -0.4 3,966,902 - Psyr_3314 0.63 -2.0 3,966,902 - Psyr_3314 0.63 +0.6 3,966,902 - Psyr_3314 0.63 -1.0 3,966,902 - Psyr_3314 0.63 -1.6 3,966,939 + Psyr_3314 0.67 -1.0 3,967,018 + Psyr_3314 0.76 +0.6 3,967,018 + Psyr_3314 0.76 +3.7 3,967,018 + Psyr_3314 0.76 +0.8 3,967,018 + Psyr_3314 0.76 -2.2 3,967,018 + Psyr_3314 0.76 -0.4 3,967,018 + Psyr_3314 0.76 -0.4 3,967,019 - Psyr_3314 0.76 -1.4 3,967,019 - Psyr_3314 0.76 +0.6 3,967,019 - Psyr_3314 0.76 -2.4 3,967,019 - Psyr_3314 0.76 -2.2 3,967,019 - Psyr_3314 0.76 +1.8 3,967,021 + Psyr_3314 0.76 -3.7 3,967,022 - +1.6 3,967,075 + Psyr_3314 0.82 +1.3 3,967,075 + Psyr_3314 0.82 +0.4 3,967,105 + Psyr_3314 0.85 -0.7 3,967,106 - Psyr_3314 0.85 -1.0 3,967,106 - Psyr_3314 0.85 -0.7 3,967,106 - Psyr_3314 0.85 -1.4 3,967,111 + Psyr_3314 0.86 -2.6 3,967,111 + Psyr_3314 0.86 -0.7 3,967,111 + Psyr_3314 0.86 +3.1 3,967,111 + Psyr_3314 0.86 -1.0 3,967,111 + Psyr_3314 0.86 +1.9 3,967,111 + Psyr_3314 0.86 -0.1 3,967,111 + Psyr_3314 0.86 -0.3 3,967,112 - Psyr_3314 0.86 +1.8 3,967,112 - Psyr_3314 0.86 -2.2 3,967,112 - Psyr_3314 0.86 +0.4 3,967,112 - Psyr_3314 0.86 -1.8 3,967,112 - Psyr_3314 0.86 -2.2 3,967,112 - Psyr_3314 0.86 -0.4 3,967,299 + -1.4 3,967,356 + -0.0 3,967,356 + +0.9 3,967,357 - +0.4 3,967,403 + Psyr_3315 0.21 -2.8 3,967,409 + Psyr_3315 0.23 +0.3 3,967,682 + -2.2 3,967,824 + +1.1 3,967,875 - +0.6 3,967,875 - +0.6 3,967,879 + -0.8 3,967,879 + +3.3 3,967,879 + +0.0
Or see this region's nucleotide sequence