Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1926

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
2,198,378	+		Psyr_1925	0.22	-1.2
2,198,404	-		Psyr_1925	0.24	-0.5
2,198,404	-		Psyr_1925	0.24	+2.3
2,198,404	-		Psyr_1925	0.24	+1.9
2,198,404	-		Psyr_1925	0.24	+2.3
2,198,579	-		Psyr_1925	0.38	-0.5
2,198,579	-		Psyr_1925	0.38	+2.3
2,198,607	+		Psyr_1925	0.40	-2.1
2,198,646	-		Psyr_1925	0.43	+1.4
2,198,758	+		Psyr_1925	0.52	-1.1
2,198,759	-		Psyr_1925	0.52	+0.9
2,198,867	+		Psyr_1925	0.60	+0.6
2,198,867	+		Psyr_1925	0.60	-2.5
2,198,867	+		Psyr_1925	0.60	+1.1
2,198,867	+		Psyr_1925	0.60	-1.1
2,198,868	-		Psyr_1925	0.60	-1.1
2,198,868	-		Psyr_1925	0.60	-0.4
2,198,868	-		Psyr_1925	0.60	+0.5
2,198,869	+		Psyr_1925	0.60	-1.5
2,198,870	-		Psyr_1925	0.60	+4.5
2,198,938	+		Psyr_1925	0.66	+0.3
2,198,939	-		Psyr_1925	0.66	-0.3
2,199,033	+		Psyr_1925	0.73	-1.9
2,199,033	+		Psyr_1925	0.73	+1.0
2,199,033	+		Psyr_1925	0.73	-0.1
2,199,034	-		Psyr_1925	0.73	+2.7
2,199,106	+		Psyr_1925	0.79	-0.7
2,199,298	+				+2.1
2,199,298	+				-0.5
2,199,298	+				+0.5
2,199,299	-				+3.5
2,199,299	-				+2.1
2,199,302	-				-1.8
2,199,302	-				+0.5
2,199,302	-				+0.4
2,199,302	-				+0.7
2,199,334	-				-0.2
2,199,341	+				+2.1
2,199,341	+				+3.0
2,199,341	+				+0.5
2,199,346	+				+1.3
2,199,347	-				+0.5
2,199,384	+				+0.5
2,199,384	+				+1.2
2,199,384	+				-1.3
2,199,403	+				-2.3
2,199,403	+				-0.5
2,199,403	+				+0.2
2,199,404	-				+0.9
2,199,404	-				-0.5
2,199,404	-				-1.0
2,199,460	-		Psyr_1926	0.12	+2.1
2,199,590	+		Psyr_1926	0.30	+0.9
2,199,604	-		Psyr_1926	0.32	-0.7
2,199,631	+		Psyr_1926	0.36	+0.1
2,199,632	-		Psyr_1926	0.36	-1.0
2,199,708	-		Psyr_1926	0.47	-1.0
2,199,708	-		Psyr_1926	0.47	-0.3
2,199,708	-		Psyr_1926	0.47	+1.4
2,199,782	+		Psyr_1926	0.57	+0.3
2,199,817	+		Psyr_1926	0.62	-1.9
2,199,817	+		Psyr_1926	0.62	-1.5
2,199,817	+		Psyr_1926	0.62	+3.0
2,199,817	+		Psyr_1926	0.62	-0.5
2,199,817	+		Psyr_1926	0.62	-2.9
2,199,818	-		Psyr_1926	0.62	+1.6
2,199,818	-		Psyr_1926	0.62	-0.9
2,199,818	-		Psyr_1926	0.62	-2.3
2,199,821	+		Psyr_1926	0.62	-1.5
2,199,821	+		Psyr_1926	0.62	-0.7
2,199,821	+		Psyr_1926	0.62	-0.5
2,199,872	+		Psyr_1926	0.70	-1.8
2,199,873	-		Psyr_1926	0.70	+1.0
2,199,943	+		Psyr_1926	0.80	-1.0
2,200,100	+				+0.1
2,200,107	-				-1.0
2,200,107	-				+0.5
2,200,177	+		Psyr_1927	0.18	+1.9
2,200,177	+		Psyr_1927	0.18	-0.0
2,200,177	+		Psyr_1927	0.18	-1.8
2,200,178	-		Psyr_1927	0.19	+0.9
2,200,178	-		Psyr_1927	0.19	+0.5
2,200,178	-		Psyr_1927	0.19	+0.5
2,200,178	-		Psyr_1927	0.19	+2.0
2,200,268	-		Psyr_1927	0.39	+0.7
2,200,271	+		Psyr_1927	0.39	+0.5
2,200,272	-		Psyr_1927	0.40	-1.0
2,200,272	-		Psyr_1927	0.40	+0.7
2,200,272	-		Psyr_1927	0.40	+2.3
2,200,323	-		Psyr_1927	0.51	+3.2
2,200,323	-		Psyr_1927	0.51	-2.9
2,200,326	+		Psyr_1927	0.52	-0.5
2,200,326	+		Psyr_1927	0.52	-0.6
2,200,327	-		Psyr_1927	0.52	-0.7
2,200,341	+		Psyr_1927	0.55	-0.0
2,200,341	+		Psyr_1927	0.55	+2.1
2,200,341	+		Psyr_1927	0.55	+1.7
2,200,341	+		Psyr_1927	0.55	-2.6
2,200,341	+		Psyr_1927	0.55	-0.5
2,200,341	+		Psyr_1927	0.55	+2.1
2,200,341	+		Psyr_1927	0.55	-1.0
2,200,341	+		Psyr_1927	0.55	+2.5
2,200,341	+		Psyr_1927	0.55	-0.5
2,200,341	+		Psyr_1927	0.55	-2.5
2,200,341	+		Psyr_1927	0.55	+0.5
2,200,341	+		Psyr_1927	0.55	-3.0
2,200,342	-		Psyr_1927	0.55	-1.5
2,200,342	-		Psyr_1927	0.55	+1.8
2,200,342	-		Psyr_1927	0.55	-1.5
2,200,342	-		Psyr_1927	0.55	+0.1
2,200,342	-		Psyr_1927	0.55	+2.1
2,200,343	+		Psyr_1927	0.55	-0.8
2,200,372	+		Psyr_1927	0.62	+0.1
2,200,413	+		Psyr_1927	0.71	-0.5
2,200,413	+		Psyr_1927	0.71	-1.2
2,200,413	+		Psyr_1927	0.71	+3.0
2,200,414	-		Psyr_1927	0.71	+0.7
2,200,415	+		Psyr_1927	0.72	+2.6
2,200,416	-		Psyr_1927	0.72	+1.4
2,200,416	-		Psyr_1927	0.72	+0.4
2,200,416	-		Psyr_1927	0.72	+0.5
2,200,416	-		Psyr_1927	0.72	-2.9
2,200,448	+		Psyr_1927	0.79	+0.7
2,200,448	+		Psyr_1927	0.79	-2.8
2,200,448	+		Psyr_1927	0.79	+1.4
2,200,448	+		Psyr_1927	0.79	+3.3
2,200,448	+		Psyr_1927	0.79	-1.7
2,200,448	+		Psyr_1927	0.79	+0.5
2,200,448	+		Psyr_1927	0.79	-0.0
2,200,449	-		Psyr_1927	0.79	-0.3
2,200,449	-		Psyr_1927	0.79	-0.2
2,200,449	-		Psyr_1927	0.79	-2.5
2,200,449	-		Psyr_1927	0.79	+2.3
2,200,449	-		Psyr_1927	0.79	+4.7
2,200,449	-		Psyr_1927	0.79	-1.0
2,200,449	-		Psyr_1927	0.79	-1.0
2,200,449	-		Psyr_1927	0.79	-1.0
2,200,449	-		Psyr_1927	0.79	-1.8
2,200,449	-		Psyr_1927	0.79	+1.2
2,200,473	+		Psyr_1927	0.85	-0.5
2,200,473	+		Psyr_1927	0.85	+1.5
2,200,473	+		Psyr_1927	0.85	-1.0
2,200,473	+		Psyr_1927	0.85	-0.2
2,200,473	+		Psyr_1927	0.85	+0.1
2,200,473	+		Psyr_1927	0.85	+1.9
2,200,474	-		Psyr_1927	0.85	+1.3
2,200,474	-		Psyr_1927	0.85	-1.0
2,200,474	-		Psyr_1927	0.85	+1.2
2,200,474	-		Psyr_1927	0.85	+0.4
2,200,474	-		Psyr_1927	0.85	-0.0
2,200,474	-		Psyr_1927	0.85	+2.5
2,200,474	-		Psyr_1927	0.85	+0.8
2,200,490	+		Psyr_1927	0.88	-3.0
2,200,491	-		Psyr_1927	0.89	-1.0
2,200,583	-				-0.0
2,200,600	+				+0.5
2,200,601	-				+0.5
2,200,601	-				+1.8
2,200,665	+				-2.0
2,200,665	+				-1.0
2,200,665	+				-3.0
2,200,665	+				+1.5
2,200,665	+				+0.2
2,200,665	+				+0.5
2,200,665	+				+1.6
2,200,665	+				-0.5
2,200,665	+				-1.0
2,200,665	+				-1.8
2,200,665	+				+2.5
2,200,665	+				-1.0
2,200,666	-				-0.7
2,200,666	-				-2.6
2,200,666	-				-1.0
2,200,666	-				+0.5
2,200,666	-				-2.5
2,200,666	-				-2.0
2,200,666	-				-1.5
2,200,666	-				-2.0
2,200,687	+				+1.7
2,200,688	-				-1.0
2,200,688	-				-0.7
2,200,714	+				-1.0
2,200,715	-				-1.0
2,200,718	+				+2.0
2,200,718	+				-1.5
2,200,718	+				-1.8
2,200,718	+				+1.7
2,200,718	+				+0.2
2,200,719	-				-1.3
2,200,719	-				+0.9
2,200,719	-				-0.5
2,200,719	-				+0.5
2,200,719	-				+2.5
2,200,719	-				+2.2
2,200,720	+				-3.0
2,200,720	+				-2.0
2,200,720	+				-1.0
2,200,720	+				+0.5
2,200,721	-				-0.5
2,200,721	-				+0.9
2,200,893	+				-1.0
2,200,893	+				-0.2
2,200,893	+				+0.3
2,200,894	-				+2.1
2,200,894	-				+4.7
2,201,033	+		Psyr_1928	0.23	+1.6
2,201,033	+		Psyr_1928	0.23	-2.0
2,201,034	-		Psyr_1928	0.23	-2.8
2,201,034	-		Psyr_1928	0.23	-1.0
2,201,034	-		Psyr_1928	0.23	+3.5