Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1432

Experiment: apoplastic; Green bean; 13 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 13 days
1,619,954	+				+2.1
1,619,954	+				+0.2
1,619,954	+				-0.9
1,619,954	+				-2.5
1,619,954	+				-1.4
1,619,954	+				-0.9
1,619,955	-				+1.5
1,619,955	-				-0.9
1,619,955	-				-1.3
1,619,955	-				-0.7
1,619,956	+				+0.6
1,619,986	-				-1.4
1,620,048	+				-1.3
1,620,065	+				+2.8
1,620,065	+				+3.9
1,620,066	-				-0.5
1,620,066	-				-0.6
1,620,066	-				+0.5
1,620,092	+				-0.9
1,620,101	-				-0.1
1,620,136	+				-2.1
1,620,136	+				+3.2
1,620,137	-				+0.2
1,620,137	-				-1.4
1,620,137	-				-0.7
1,620,137	-				-0.4
1,620,177	+				-2.2
1,620,178	-				+1.1
1,620,178	-				-0.9
1,620,178	-				+1.0
1,620,191	+				-1.2
1,620,191	+				-0.7
1,620,191	+				+0.2
1,620,277	+				-2.8
1,620,277	+				-1.4
1,620,277	+				-1.1
1,620,277	+				+0.4
1,620,277	+				+2.5
1,620,277	+				-1.2
1,620,278	-				+1.2
1,620,278	-				-2.9
1,620,278	-				+1.0
1,620,278	-				-0.8
1,620,283	-				+0.2
1,620,296	+				-0.4
1,620,299	+				-0.4
1,620,299	+				+2.5
1,620,300	-				-0.7
1,620,300	-				+1.9
1,620,305	-				+0.9
1,620,314	+				+2.1
1,620,315	-				+0.2
1,620,329	+				+0.1
1,620,329	+				+2.7
1,620,330	-				+2.1
1,620,330	-				+3.3
1,620,381	+				+2.2
1,620,381	+				-2.5
1,620,381	+				-1.0
1,620,392	-		Psyr_1431	0.13	-2.5
1,620,412	+		Psyr_1431	0.20	-1.9
1,620,447	+		Psyr_1431	0.32	+0.8
1,620,447	+		Psyr_1431	0.32	-0.9
1,620,448	-		Psyr_1431	0.33	-1.8
1,620,448	-		Psyr_1431	0.33	+0.3
1,620,448	-		Psyr_1431	0.33	+0.6
1,620,498	+		Psyr_1431	0.50	-1.9
1,620,556	+		Psyr_1431	0.70	-0.4
1,620,556	+		Psyr_1431	0.70	+1.6
1,620,557	-		Psyr_1431	0.70	+0.2
1,620,557	-		Psyr_1431	0.70	+1.3
1,620,557	-		Psyr_1431	0.70	-0.9
1,620,559	+		Psyr_1431	0.71	-1.8
1,620,559	+		Psyr_1431	0.71	+2.5
1,620,560	-		Psyr_1431	0.71	+1.1
1,620,673	+				+1.2
1,620,673	+				-0.9
1,620,673	+				-0.1
1,620,673	+				-0.4
1,620,674	-				-1.2
1,620,674	-				+1.1
1,620,674	-				-1.2
1,620,674	-				-2.4
1,620,674	-				-2.7
1,620,727	-				-2.8
1,620,799	+				-0.8
1,620,799	+				+1.3
1,620,800	-				-0.9
1,620,800	-				+0.8
1,620,954	+				-3.0
1,620,954	+				-3.0
1,620,954	+				-2.9
1,620,954	+				+3.1
1,620,954	+				+1.7
1,620,954	+				-1.7
1,620,954	+				+1.5
1,620,955	-				-0.7
1,620,955	-				+0.7
1,620,958	+				-1.3
1,620,958	+				-0.8
1,620,958	+				-0.3
1,620,959	-				-1.7
1,620,959	-				-1.7
1,620,959	-				-2.2
1,620,959	-				+0.7
1,620,972	+		Psyr_1432	0.11	-3.3
1,621,048	+		Psyr_1432	0.35	-0.9
1,621,113	-		Psyr_1432	0.54	-2.2
1,621,113	-		Psyr_1432	0.54	+1.5
1,621,161	+		Psyr_1432	0.69	-1.3
1,621,162	-		Psyr_1432	0.69	-2.9
1,621,214	+		Psyr_1432	0.85	+0.8
1,621,214	+		Psyr_1432	0.85	-0.1
1,621,214	+		Psyr_1432	0.85	+2.9
1,621,214	+		Psyr_1432	0.85	-0.3
1,621,214	+		Psyr_1432	0.85	+2.4
1,621,214	+		Psyr_1432	0.85	-2.2
1,621,214	+		Psyr_1432	0.85	-2.5
1,621,215	-		Psyr_1432	0.86	-2.9
1,621,215	-		Psyr_1432	0.86	-0.8
1,621,215	-		Psyr_1432	0.86	-0.6
1,621,215	-		Psyr_1432	0.86	+0.1
1,621,215	-		Psyr_1432	0.86	+0.7
1,621,215	-		Psyr_1432	0.86	-1.2
1,621,215	-		Psyr_1432	0.86	+2.1
1,621,215	-		Psyr_1432	0.86	+2.7
1,621,215	-		Psyr_1432	0.86	+0.1
1,621,216	+		Psyr_1432	0.86	-0.2
1,621,216	+		Psyr_1432	0.86	-0.8
1,621,216	+		Psyr_1432	0.86	-1.3
1,621,216	+		Psyr_1432	0.86	-1.9
1,621,216	+		Psyr_1432	0.86	-1.7
1,621,216	+		Psyr_1432	0.86	-1.7
1,621,217	-		Psyr_1432	0.86	-0.9
1,621,217	-		Psyr_1432	0.86	-3.0
1,621,217	-		Psyr_1432	0.86	+1.2
1,621,217	-		Psyr_1432	0.86	-0.6
1,621,217	-		Psyr_1432	0.86	-2.3
1,621,217	-		Psyr_1432	0.86	-0.7
1,621,217	-		Psyr_1432	0.86	-0.9
1,621,217	-		Psyr_1432	0.86	-1.9
1,621,217	-		Psyr_1432	0.86	-0.9
1,621,260	-				-0.9
1,621,289	+				-0.3
1,621,289	+				-0.3
1,621,290	-				-1.4
1,621,293	+				+0.7
1,621,293	+				+2.7
1,621,293	+				+4.2
1,621,294	-				-1.3
1,621,294	-				-1.3
1,621,349	+				+0.5
1,621,404	+				-2.5
1,621,404	+				-0.8
1,621,405	-				+2.8
1,621,405	-				+0.7
1,621,446	+				-1.3
1,621,446	+				+3.0
1,621,446	+				+2.0
1,621,447	-				-2.2
1,621,472	-				-1.9
1,621,480	+				+1.5
1,621,481	-				-0.7
1,621,483	+				-2.3
1,621,483	+				+0.5
1,621,483	+				+0.7
1,621,484	-				-1.7
1,621,484	-				+0.3
1,621,484	-				+2.5
1,621,484	-				+2.7
1,621,484	-				+0.7
1,621,596	-				+1.8
1,621,626	+				+0.7
1,621,626	+				-1.3
1,621,626	+				+2.4
1,621,626	+				+2.2
1,621,626	+				+1.1
1,621,627	-				-1.7
1,621,627	-				-0.1
1,621,627	-				-1.9
1,621,671	-				-2.4
1,621,766	-		Psyr_1433	0.16	+0.1
1,621,766	-		Psyr_1433	0.16	-2.4
1,621,807	+		Psyr_1433	0.19	+0.6
1,621,807	+		Psyr_1433	0.19	-0.4
1,621,807	+		Psyr_1433	0.19	+1.1
1,621,807	+		Psyr_1433	0.19	-0.9
1,621,807	+		Psyr_1433	0.19	-2.4
1,621,807	+		Psyr_1433	0.19	+0.5
1,621,808	-		Psyr_1433	0.19	+0.6
1,621,808	-		Psyr_1433	0.19	+0.8
1,621,838	+		Psyr_1433	0.21	-1.3
1,621,839	-		Psyr_1433	0.21	+2.3
1,621,839	-		Psyr_1433	0.21	+3.3
1,621,839	-		Psyr_1433	0.21	+1.1
1,621,839	-		Psyr_1433	0.21	+1.0
1,621,865	-		Psyr_1433	0.23	+1.7
1,621,885	+		Psyr_1433	0.25	-0.4
1,621,886	-		Psyr_1433	0.25	+2.9
1,621,886	-		Psyr_1433	0.25	+1.1
1,621,896	+		Psyr_1433	0.25	-0.9
1,621,897	-		Psyr_1433	0.26	-1.4
1,621,902	+		Psyr_1433	0.26	+1.6
1,621,903	-		Psyr_1433	0.26	+1.6
1,621,903	-		Psyr_1433	0.26	+1.8
1,621,903	-		Psyr_1433	0.26	-1.9
1,622,022	+		Psyr_1433	0.34	+0.6
1,622,022	+		Psyr_1433	0.34	-0.4
1,622,022	+		Psyr_1433	0.34	+0.1
1,622,022	+		Psyr_1433	0.34	+0.5
1,622,022	+		Psyr_1433	0.34	-2.8
1,622,022	+		Psyr_1433	0.34	+1.8
1,622,023	-		Psyr_1433	0.34	-1.7
1,622,023	-		Psyr_1433	0.34	-1.7
1,622,023	-		Psyr_1433	0.34	+0.6
1,622,162	+		Psyr_1433	0.44	+4.7
1,622,163	-		Psyr_1433	0.44	+3.8
1,622,219	+		Psyr_1433	0.48	+1.9