Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0873

Experiment: apoplastic; Green bean; 13 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0872 and Psyr_0873 overlap by 4 nucleotidesPsyr_0873 and Psyr_0874 are separated by 201 nucleotidesPsyr_0874 and Psyr_0875 are separated by 2 nucleotides Psyr_0872: Psyr_0872 - Alkaline phosphatase, at 994,272 to 995,843 _0872 Psyr_0873: Psyr_0873 - GCN5-related N-acetyltransferase, at 995,840 to 996,403 _0873 Psyr_0874: Psyr_0874 - outer membrane transport energization protein ExbD, at 996,605 to 997,012 _0874 Psyr_0875: Psyr_0875 - outer membrane transport energization protein TonB, at 997,015 to 997,779 _0875 Position (kb) 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 994.975 kb on + strand, within Psyr_0872at 994.975 kb on + strand, within Psyr_0872at 994.976 kb on - strand, within Psyr_0872at 994.979 kb on + strand, within Psyr_0872at 994.979 kb on + strand, within Psyr_0872at 994.980 kb on - strand, within Psyr_0872at 995.033 kb on - strand, within Psyr_0872at 995.033 kb on - strandat 995.033 kb on - strand, within Psyr_0872at 995.113 kb on + strand, within Psyr_0872at 995.114 kb on - strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.198 kb on - strand, within Psyr_0872at 995.283 kb on + strand, within Psyr_0872at 995.284 kb on - strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.296 kb on + strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.297 kb on - strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.302 kb on + strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.303 kb on - strand, within Psyr_0872at 995.365 kb on + strand, within Psyr_0872at 995.518 kb on - strand, within Psyr_0872at 995.518 kb on - strand, within Psyr_0872at 995.518 kb on - strand, within Psyr_0872at 995.577 kb on + strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.578 kb on - strand, within Psyr_0872at 995.686 kb on - strandat 995.784 kb on + strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.785 kb on - strandat 995.866 kb on - strandat 995.935 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.946 kb on + strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 995.947 kb on - strand, within Psyr_0873at 996.058 kb on + strand, within Psyr_0873at 996.383 kb on - strandat 996.481 kb on + strandat 996.481 kb on + strandat 996.482 kb on - strandat 996.482 kb on - strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.497 kb on + strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.498 kb on - strandat 996.503 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.514 kb on + strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.515 kb on - strandat 996.525 kb on + strandat 996.525 kb on + strandat 996.525 kb on + strandat 996.525 kb on + strandat 996.536 kb on + strandat 996.536 kb on + strandat 996.537 kb on - strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.567 kb on + strandat 996.568 kb on - strandat 996.568 kb on - strandat 996.568 kb on - strandat 996.583 kb on - strandat 996.625 kb on + strandat 996.696 kb on + strand, within Psyr_0874at 996.702 kb on + strand, within Psyr_0874at 996.703 kb on - strand, within Psyr_0874at 996.703 kb on - strand, within Psyr_0874at 996.819 kb on + strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 996.820 kb on - strand, within Psyr_0874at 996.910 kb on + strand, within Psyr_0874at 996.911 kb on - strand, within Psyr_0874at 996.952 kb on + strand, within Psyr_0874at 996.952 kb on + strand, within Psyr_0874at 996.953 kb on - strand, within Psyr_0874at 996.953 kb on - strand, within Psyr_0874at 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.018 kb on + strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.019 kb on - strandat 997.034 kb on + strandat 997.034 kb on + strandat 997.034 kb on + strandat 997.035 kb on - strandat 997.035 kb on - strandat 997.035 kb on - strandat 997.344 kb on + strand, within Psyr_0875at 997.344 kb on + strand, within Psyr_0875at 997.345 kb on - strand, within Psyr_0875

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days
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994,975 + Psyr_0872 0.45 -3.4
994,975 + Psyr_0872 0.45 +0.2
994,976 - Psyr_0872 0.45 +0.8
994,979 + Psyr_0872 0.45 -2.2
994,979 + Psyr_0872 0.45 +1.5
994,980 - Psyr_0872 0.45 -2.6
995,033 - Psyr_0872 0.48 -0.2
995,033 - -0.8
995,033 - Psyr_0872 0.48 -3.0
995,113 + Psyr_0872 0.53 +1.4
995,114 - Psyr_0872 0.54 -0.2
995,198 - Psyr_0872 0.59 -1.2
995,198 - Psyr_0872 0.59 -2.2
995,198 - Psyr_0872 0.59 -0.6
995,283 + Psyr_0872 0.64 +0.2
995,284 - Psyr_0872 0.64 -2.8
995,296 + Psyr_0872 0.65 -1.7
995,296 + Psyr_0872 0.65 -0.8
995,296 + Psyr_0872 0.65 -2.0
995,296 + Psyr_0872 0.65 -2.4
995,297 - Psyr_0872 0.65 -1.8
995,297 - Psyr_0872 0.65 +2.8
995,297 - Psyr_0872 0.65 +2.1
995,297 - Psyr_0872 0.65 -1.2
995,297 - Psyr_0872 0.65 +0.2
995,297 - Psyr_0872 0.65 -2.7
995,297 - Psyr_0872 0.65 +0.8
995,297 - Psyr_0872 0.65 +2.8
995,297 - Psyr_0872 0.65 -0.8
995,297 - Psyr_0872 0.65 +0.1
995,297 - Psyr_0872 0.65 -2.4
995,302 + Psyr_0872 0.66 -1.2
995,302 + Psyr_0872 0.66 -0.2
995,303 - Psyr_0872 0.66 -2.2
995,303 - Psyr_0872 0.66 -0.0
995,303 - Psyr_0872 0.66 -1.8
995,365 + Psyr_0872 0.70 -0.2
995,518 - Psyr_0872 0.79 +0.8
995,518 - Psyr_0872 0.79 -0.7
995,518 - Psyr_0872 0.79 +1.9
995,577 + Psyr_0872 0.83 -0.2
995,578 - Psyr_0872 0.83 +0.3
995,578 - Psyr_0872 0.83 +0.8
995,578 - Psyr_0872 0.83 -0.7
995,686 - -1.8
995,784 + -1.6
995,785 - +0.0
995,785 - +0.8
995,785 - -1.2
995,785 - -2.4
995,785 - +0.4
995,785 - +2.5
995,785 - -0.1
995,785 - +1.6
995,866 - -1.6
995,935 + Psyr_0873 0.17 -0.5
995,946 + Psyr_0873 0.19 +0.8
995,946 + Psyr_0873 0.19 -1.0
995,946 + Psyr_0873 0.19 -1.4
995,946 + Psyr_0873 0.19 -0.4
995,946 + Psyr_0873 0.19 +1.1
995,946 + Psyr_0873 0.19 -3.0
995,946 + Psyr_0873 0.19 -0.0
995,946 + Psyr_0873 0.19 +1.1
995,947 - Psyr_0873 0.19 +1.8
995,947 - Psyr_0873 0.19 -1.2
995,947 - Psyr_0873 0.19 +1.0
996,058 + Psyr_0873 0.39 +0.5
996,383 - -0.8
996,481 + -0.8
996,481 + +3.7
996,482 - -1.2
996,482 - +1.8
996,497 + -3.0
996,497 + +2.4
996,497 + +0.2
996,497 + +0.2
996,498 - -1.2
996,498 - -1.6
996,498 - +1.6
996,498 - +3.6
996,498 - -2.4
996,498 - -3.1
996,498 - +0.0
996,498 - -0.2
996,503 + -2.2
996,514 + +0.0
996,514 + -1.5
996,514 + -1.2
996,514 + -0.9
996,514 + -2.2
996,514 + +0.3
996,514 + +0.8
996,514 + +1.8
996,514 + -1.6
996,514 + -0.2
996,514 + +2.7
996,514 + -0.8
996,514 + -0.2
996,514 + -0.2
996,514 + +5.0
996,515 - +0.8
996,515 - +1.9
996,515 - +1.6
996,515 - +1.5
996,515 - +1.0
996,515 - +0.4
996,515 - +0.4
996,525 + -0.2
996,525 + -0.8
996,525 + -1.2
996,525 + +3.0
996,536 + +0.1
996,536 + +0.1
996,537 - -2.2
996,567 + +1.3
996,567 + +2.4
996,567 + +0.5
996,567 + +0.5
996,568 - -2.0
996,568 - +0.0
996,568 - -0.0
996,583 - -1.8
996,625 + -1.4
996,696 + Psyr_0874 0.22 -1.3
996,702 + Psyr_0874 0.24 -2.4
996,703 - Psyr_0874 0.24 +3.2
996,703 - Psyr_0874 0.24 -3.0
996,819 + Psyr_0874 0.52 -1.8
996,820 - Psyr_0874 0.53 +1.1
996,820 - Psyr_0874 0.53 -1.5
996,910 + Psyr_0874 0.75 -0.2
996,911 - Psyr_0874 0.75 +2.3
996,952 + Psyr_0874 0.85 +1.8
996,952 + Psyr_0874 0.85 -2.4
996,953 - Psyr_0874 0.85 +1.1
996,953 - Psyr_0874 0.85 -0.2
997,018 + +2.3
997,018 + +2.1
997,018 + +1.1
997,018 + -1.2
997,019 - +1.8
997,019 - +1.5
997,019 - +0.1
997,019 - +3.9
997,019 - +0.3
997,034 + +4.8
997,034 + +0.8
997,034 + +2.4
997,035 - +0.8
997,035 - +1.9
997,035 - +0.8
997,344 + Psyr_0875 0.43 +0.2
997,344 + Psyr_0875 0.43 +0.6
997,345 - Psyr_0875 0.43 -2.2

Or see this region's nucleotide sequence