Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0767

Experiment: apoplastic; Green bean; 13 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0765 and Psyr_0766 are separated by 56 nucleotidesPsyr_0766 and Psyr_0767 are separated by 132 nucleotidesPsyr_0767 and Psyr_0768 are separated by 168 nucleotidesPsyr_0768 and Psyr_0769 are separated by 201 nucleotidesPsyr_0769 and Psyr_0770 are separated by 14 nucleotides Psyr_0765: Psyr_0765 - conserved hypothetical protein, at 871,719 to 872,288 _0765 Psyr_0766: Psyr_0766 - Protein of unknown function DUF1440, at 872,345 to 872,839 _0766 Psyr_0767: Psyr_0767 - transcriptional regulator, LysR family, at 872,972 to 873,892 _0767 Psyr_0768: Psyr_0768 - conserved hypothetical protein, at 874,061 to 874,216 _0768 Psyr_0769: Psyr_0769 - conserved hypothetical membrane-anchored protein, at 874,418 to 874,861 _0769 Psyr_0770: Psyr_0770 - conserved hypothetical protein, at 874,876 to 875,334 _0770 Position (kb) 872 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 871.987 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.149 kb on + strand, within Psyr_0765at 872.149 kb on + strand, within Psyr_0765at 872.150 kb on - strand, within Psyr_0765at 872.150 kb on - strand, within Psyr_0765at 872.150 kb on - strand, within Psyr_0765at 872.196 kb on - strand, within Psyr_0765at 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.276 kb on - strandat 872.276 kb on - strandat 872.278 kb on - strandat 872.278 kb on - strandat 872.278 kb on - strandat 872.278 kb on - strandat 872.303 kb on + strandat 872.576 kb on + strand, within Psyr_0766at 872.577 kb on - strand, within Psyr_0766at 872.577 kb on - strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.641 kb on - strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.662 kb on - strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.859 kb on - strandat 872.859 kb on - strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.928 kb on + strandat 872.956 kb on - strandat 872.999 kb on + strandat 873.312 kb on - strand, within Psyr_0767at 873.439 kb on + strand, within Psyr_0767at 873.446 kb on - strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.754 kb on - strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 874.075 kb on + strandat 874.076 kb on - strandat 874.076 kb on - strandat 874.076 kb on - strandat 874.076 kb on - strandat 874.076 kb on - strandat 874.165 kb on + strand, within Psyr_0768at 874.214 kb on + strandat 874.214 kb on + strandat 874.215 kb on - strandat 874.431 kb on - strandat 874.440 kb on - strandat 874.440 kb on - strandat 874.440 kb on - strandat 874.658 kb on + strand, within Psyr_0769at 874.658 kb on + strand, within Psyr_0769at 874.658 kb on + strand, within Psyr_0769at 874.659 kb on - strand, within Psyr_0769at 874.659 kb on - strand, within Psyr_0769at 874.772 kb on - strand, within Psyr_0769at 874.772 kb on - strand, within Psyr_0769at 874.830 kb on + strandat 874.830 kb on + strandat 874.831 kb on - strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.862 kb on - strandat 874.862 kb on - strandat 874.862 kb on - strandat 874.884 kb on - strandat 874.884 kb on - strandat 874.887 kb on + strandat 874.887 kb on + strandat 874.887 kb on + strandat 874.887 kb on + strandat 874.888 kb on - strandat 874.888 kb on - strandat 874.888 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days
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871,987 + Psyr_0765 0.47 +2.4
872,071 + Psyr_0765 0.62 +0.5
872,071 + Psyr_0765 0.62 +2.0
872,071 + Psyr_0765 0.62 -1.2
872,071 + Psyr_0765 0.62 -0.8
872,072 - Psyr_0765 0.62 +0.6
872,072 - Psyr_0765 0.62 +1.2
872,072 - Psyr_0765 0.62 +0.1
872,072 - Psyr_0765 0.62 +0.4
872,149 + Psyr_0765 0.75 -2.4
872,149 + Psyr_0765 0.75 +1.8
872,150 - Psyr_0765 0.76 -0.7
872,150 - Psyr_0765 0.76 -0.8
872,150 - Psyr_0765 0.76 +1.4
872,196 - Psyr_0765 0.84 -0.2
872,275 + +1.9
872,275 + +4.8
872,275 + +0.0
872,275 + -0.5
872,275 + -2.4
872,275 + -2.0
872,275 + +0.7
872,276 - -1.2
872,276 - -0.1
872,278 - -1.2
872,278 - -0.8
872,278 - +2.4
872,278 - -2.2
872,303 + +3.6
872,576 + Psyr_0766 0.47 -2.8
872,577 - Psyr_0766 0.47 -1.4
872,577 - Psyr_0766 0.47 -0.2
872,589 + Psyr_0766 0.49 -0.2
872,589 + Psyr_0766 0.49 +0.4
872,589 + Psyr_0766 0.49 -0.7
872,589 + Psyr_0766 0.49 -0.2
872,589 + Psyr_0766 0.49 -1.5
872,589 + Psyr_0766 0.49 -1.2
872,589 + Psyr_0766 0.49 +0.9
872,590 - Psyr_0766 0.49 -3.4
872,590 - Psyr_0766 0.49 +0.2
872,590 - Psyr_0766 0.49 -2.9
872,590 - Psyr_0766 0.49 -1.8
872,641 - Psyr_0766 0.60 +1.5
872,661 + Psyr_0766 0.64 -2.5
872,661 + Psyr_0766 0.64 +1.8
872,662 - Psyr_0766 0.64 +2.2
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 -2.0
872,667 + Psyr_0766 0.65 -1.2
872,667 + Psyr_0766 0.65 +2.1
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 -0.3
872,667 + Psyr_0766 0.65 +2.7
872,667 + Psyr_0766 0.65 -1.5
872,667 + Psyr_0766 0.65 +1.8
872,667 + Psyr_0766 0.65 +2.0
872,667 + Psyr_0766 0.65 +1.7
872,667 + Psyr_0766 0.65 -3.3
872,667 + Psyr_0766 0.65 +0.3
872,667 + Psyr_0766 0.65 +4.4
872,667 + Psyr_0766 0.65 +1.6
872,667 + Psyr_0766 0.65 +1.0
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 +2.7
872,667 + Psyr_0766 0.65 +0.2
872,667 + Psyr_0766 0.65 +2.4
872,667 + Psyr_0766 0.65 -2.2
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 +0.2
872,667 + Psyr_0766 0.65 +1.5
872,667 + Psyr_0766 0.65 -2.5
872,667 + Psyr_0766 0.65 +0.2
872,667 + Psyr_0766 0.65 +1.4
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 +2.2
872,667 + Psyr_0766 0.65 +2.8
872,667 + Psyr_0766 0.65 +1.0
872,667 + Psyr_0766 0.65 +0.8
872,667 + Psyr_0766 0.65 -0.5
872,668 - Psyr_0766 0.65 +2.9
872,668 - Psyr_0766 0.65 -1.5
872,668 - Psyr_0766 0.65 -1.2
872,668 - Psyr_0766 0.65 -1.8
872,668 - Psyr_0766 0.65 -1.8
872,668 - Psyr_0766 0.65 -1.8
872,668 - Psyr_0766 0.65 +1.3
872,668 - Psyr_0766 0.65 +1.8
872,668 - Psyr_0766 0.65 +1.6
872,668 - Psyr_0766 0.65 -2.2
872,668 - Psyr_0766 0.65 +1.8
872,668 - Psyr_0766 0.65 +0.8
872,668 - Psyr_0766 0.65 -0.2
872,668 - Psyr_0766 0.65 +4.3
872,668 - Psyr_0766 0.65 -1.0
872,668 - Psyr_0766 0.65 -2.7
872,668 - Psyr_0766 0.65 +1.6
872,668 - Psyr_0766 0.65 -1.8
872,668 - Psyr_0766 0.65 +1.2
872,668 - Psyr_0766 0.65 +0.6
872,668 - Psyr_0766 0.65 -1.8
872,668 - Psyr_0766 0.65 -0.4
872,668 - Psyr_0766 0.65 -1.8
872,668 - Psyr_0766 0.65 -1.5
872,668 - Psyr_0766 0.65 -0.8
872,668 - Psyr_0766 0.65 -0.9
872,668 - Psyr_0766 0.65 -0.2
872,668 - Psyr_0766 0.65 +1.2
872,859 - +2.0
872,859 - +1.1
872,905 + +2.4
872,905 + +0.1
872,905 + +2.4
872,905 + -2.4
872,905 + +1.8
872,906 - -1.0
872,906 - +1.8
872,906 - -1.8
872,906 - +1.4
872,928 + +3.8
872,956 - -1.8
872,999 + -2.0
873,312 - Psyr_0767 0.37 +1.0
873,439 + Psyr_0767 0.51 -1.2
873,446 - Psyr_0767 0.51 -0.8
873,753 + Psyr_0767 0.85 -1.9
873,754 - Psyr_0767 0.85 -2.5
873,779 + Psyr_0767 0.88 +1.0
873,779 + Psyr_0767 0.88 -2.4
873,779 + Psyr_0767 0.88 -1.5
873,779 + Psyr_0767 0.88 +0.6
873,780 - Psyr_0767 0.88 +3.2
873,780 - Psyr_0767 0.88 -0.8
873,780 - Psyr_0767 0.88 +0.4
873,780 - Psyr_0767 0.88 -1.2
873,780 - Psyr_0767 0.88 +2.9
873,780 - Psyr_0767 0.88 +0.8
873,780 - Psyr_0767 0.88 -2.5
873,780 - Psyr_0767 0.88 +1.5
873,780 - Psyr_0767 0.88 +0.0
874,075 + +0.5
874,076 - -1.4
874,076 - -0.2
874,076 - -1.5
874,076 - +0.3
874,076 - -1.2
874,165 + Psyr_0768 0.67 -0.2
874,214 + +1.8
874,214 + +0.2
874,215 - +1.5
874,431 - -2.5
874,440 - -0.4
874,440 - +1.5
874,440 - +0.4
874,658 + Psyr_0769 0.54 -0.9
874,658 + Psyr_0769 0.54 +1.0
874,658 + Psyr_0769 0.54 +1.0
874,659 - Psyr_0769 0.54 +2.1
874,659 - Psyr_0769 0.54 +0.8
874,772 - Psyr_0769 0.80 -1.3
874,772 - Psyr_0769 0.80 +0.4
874,830 + -2.5
874,830 + -1.2
874,831 - -0.2
874,861 + +1.8
874,861 + -2.0
874,861 + +0.0
874,861 + -2.5
874,861 + -2.2
874,862 - -0.5
874,862 - -2.0
874,862 - +1.6
874,884 - +0.5
874,884 - -0.2
874,887 + -2.0
874,887 + -0.2
874,887 + +3.9
874,887 + -0.2
874,888 - -0.5
874,888 - -0.8
874,888 - +0.4

Or see this region's nucleotide sequence