Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0750 and Psyr_0751 are separated by 826 nucleotides Psyr_0751 and Psyr_0752 are separated by 825 nucleotides
Psyr_0750: Psyr_0750 - conserved hypothetical protein, at 853,283 to 854,074
_0750
Psyr_0751: Psyr_0751 - ISPs1, transposase OrfB, at 854,901 to 855,206
_0751
Psyr_0752: Psyr_0752 - conserved hypothetical protein, at 856,032 to 856,478
_0752
Position (kb) 854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 853.975 kb on - strand, within Psyr_0750 at 854.011 kb on - strand at 854.148 kb on - strand at 854.185 kb on - strand at 854.185 kb on - strand at 854.185 kb on - strand at 854.195 kb on + strand at 854.195 kb on + strand at 854.245 kb on - strand at 854.293 kb on - strand at 854.298 kb on - strand at 854.298 kb on - strand at 854.300 kb on + strand at 854.335 kb on - strand at 854.335 kb on - strand at 854.335 kb on - strand at 854.416 kb on + strand at 854.416 kb on + strand at 854.417 kb on - strand at 854.417 kb on - strand at 854.417 kb on - strand at 854.417 kb on - strand at 854.481 kb on - strand at 854.481 kb on - strand at 854.481 kb on - strand at 854.502 kb on - strand at 854.507 kb on + strand at 854.507 kb on + strand at 854.507 kb on + strand at 854.508 kb on - strand at 854.508 kb on - strand at 854.508 kb on - strand at 854.520 kb on + strand at 854.528 kb on + strand at 854.569 kb on + strand at 854.570 kb on - strand at 854.578 kb on + strand at 854.581 kb on + strand at 854.591 kb on + strand at 854.591 kb on + strand at 854.592 kb on - strand at 854.592 kb on - strand at 854.592 kb on - strand at 854.592 kb on - strand at 854.593 kb on + strand at 854.594 kb on - strand at 854.594 kb on - strand at 854.599 kb on + strand at 854.599 kb on + strand at 854.599 kb on + strand at 854.600 kb on - strand at 854.600 kb on - strand at 854.600 kb on - strand at 854.600 kb on - strand at 854.619 kb on - strand at 854.624 kb on + strand at 854.831 kb on + strand at 854.831 kb on + strand at 854.831 kb on + strand at 854.831 kb on + strand at 854.832 kb on - strand at 854.832 kb on - strand at 854.832 kb on - strand at 854.905 kb on + strand at 854.905 kb on + strand at 854.906 kb on - strand at 854.906 kb on - strand at 854.906 kb on - strand at 854.974 kb on + strand, within Psyr_0751 at 854.974 kb on + strand, within Psyr_0751 at 854.975 kb on - strand, within Psyr_0751 at 854.975 kb on - strand, within Psyr_0751 at 855.049 kb on - strand, within Psyr_0751 at 855.049 kb on - strand, within Psyr_0751 at 855.111 kb on - strand, within Psyr_0751 at 855.134 kb on + strand, within Psyr_0751 at 855.134 kb on + strand, within Psyr_0751 at 855.135 kb on - strand, within Psyr_0751 at 855.135 kb on - strand, within Psyr_0751 at 855.140 kb on + strand, within Psyr_0751 at 855.234 kb on - strand at 855.234 kb on - strand at 855.258 kb on + strand at 855.259 kb on - strand at 855.259 kb on - strand at 855.303 kb on + strand at 855.303 kb on + strand at 855.303 kb on + strand at 855.304 kb on - strand at 855.328 kb on + strand at 855.329 kb on - strand at 855.502 kb on - strand at 855.523 kb on + strand at 855.548 kb on + strand at 855.554 kb on - strand at 855.560 kb on - strand at 855.566 kb on + strand at 855.567 kb on - strand at 855.570 kb on - strand at 855.570 kb on - strand at 855.581 kb on + strand at 855.581 kb on + strand at 855.581 kb on + strand at 855.582 kb on - strand at 855.582 kb on - strand at 855.582 kb on - strand at 855.607 kb on - strand at 855.608 kb on + strand at 855.608 kb on + strand at 855.614 kb on + strand at 855.640 kb on - strand at 855.640 kb on - strand at 855.662 kb on - strand at 855.739 kb on + strand at 855.739 kb on + strand at 855.740 kb on - strand at 855.740 kb on - strand at 855.740 kb on - strand at 855.740 kb on - strand at 855.740 kb on - strand at 855.740 kb on - strand at 855.740 kb on - strand at 855.740 kb on - strand at 855.758 kb on + strand at 855.758 kb on + strand at 855.759 kb on - strand at 855.759 kb on - strand at 855.759 kb on - strand at 855.770 kb on - strand at 855.776 kb on + strand at 855.777 kb on - strand at 855.777 kb on - strand at 855.777 kb on - strand at 855.790 kb on + strand at 855.806 kb on + strand at 855.807 kb on - strand at 855.811 kb on + strand at 855.811 kb on + strand at 855.811 kb on + strand at 855.811 kb on + strand at 855.811 kb on + strand at 855.811 kb on + strand at 855.812 kb on - strand at 855.812 kb on - strand at 855.812 kb on - strand at 855.844 kb on - strand at 855.876 kb on + strand at 855.876 kb on + strand at 855.876 kb on + strand at 855.883 kb on + strand at 855.890 kb on + strand at 855.890 kb on + strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.897 kb on + strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.898 kb on - strand at 855.928 kb on + strand at 855.928 kb on + strand at 855.928 kb on + strand at 855.929 kb on - strand at 855.929 kb on - strand at 855.929 kb on - strand at 855.929 kb on - strand at 855.929 kb on - strand at 855.929 kb on - strand at 855.929 kb on - strand at 855.932 kb on + strand at 855.944 kb on + strand at 855.945 kb on - strand at 855.967 kb on - strand at 856.024 kb on + strand at 856.091 kb on + strand, within Psyr_0752 at 856.113 kb on - strand, within Psyr_0752 at 856.113 kb on - strand, within Psyr_0752 at 856.179 kb on + strand, within Psyr_0752 at 856.179 kb on + strand, within Psyr_0752 at 856.195 kb on - strand, within Psyr_0752
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 853,975 - Psyr_0750 0.87 +1.5 854,011 - -0.8 854,148 - -0.2 854,185 - -2.0 854,185 - -1.2 854,185 - +0.6 854,195 + -2.8 854,195 + -0.7 854,245 - -0.8 854,293 - -0.8 854,298 - +0.5 854,298 - -0.2 854,300 + +1.7 854,335 - -1.8 854,335 - -1.0 854,335 - -2.2 854,416 + -0.9 854,416 + +1.5 854,417 - -0.8 854,417 - +3.5 854,417 - -2.0 854,417 - -2.0 854,481 - +1.1 854,481 - +0.4 854,481 - -2.0 854,502 - +1.2 854,507 + -1.5 854,507 + +3.8 854,507 + -0.4 854,508 - -1.2 854,508 - +0.2 854,508 - -0.2 854,520 + +1.3 854,528 + +1.2 854,569 + +2.8 854,570 - +2.5 854,578 + -1.7 854,581 + +1.4 854,591 + +0.8 854,591 + -0.2 854,592 - -1.7 854,592 - +0.2 854,592 - +2.4 854,592 - -0.2 854,593 + +3.0 854,594 - -1.5 854,594 - -0.2 854,599 + +0.6 854,599 + -2.8 854,599 + -0.8 854,600 - -0.3 854,600 - -1.2 854,600 - +0.8 854,600 - -1.8 854,619 - -1.9 854,624 + +0.6 854,831 + -0.8 854,831 + +0.9 854,831 + -1.2 854,831 + +1.4 854,832 - -0.8 854,832 - +3.1 854,832 - -2.2 854,905 + -0.2 854,905 + +1.1 854,906 - +0.8 854,906 - +0.8 854,906 - +1.1 854,974 + Psyr_0751 0.24 +1.8 854,974 + Psyr_0751 0.24 +1.8 854,975 - Psyr_0751 0.24 +1.5 854,975 - Psyr_0751 0.24 -1.4 855,049 - Psyr_0751 0.48 -2.4 855,049 - Psyr_0751 0.48 -1.2 855,111 - Psyr_0751 0.69 +3.5 855,134 + Psyr_0751 0.76 +4.6 855,134 + Psyr_0751 0.76 -0.8 855,135 - Psyr_0751 0.76 +2.1 855,135 - Psyr_0751 0.76 +0.3 855,140 + Psyr_0751 0.78 -0.4 855,234 - +1.9 855,234 - +0.8 855,258 + -0.5 855,259 - +2.9 855,259 - -0.4 855,303 + +0.2 855,303 + -1.2 855,303 + -2.4 855,304 - -0.3 855,328 + +1.2 855,329 - +0.7 855,502 - -0.5 855,523 + -1.8 855,548 + -1.5 855,554 - -2.0 855,560 - -2.2 855,566 + -1.7 855,567 - -0.5 855,570 - +0.2 855,570 - -1.5 855,581 + -0.8 855,581 + -2.4 855,581 + -0.3 855,582 - -0.4 855,582 - -0.2 855,582 - -0.8 855,607 - +3.2 855,608 + -2.0 855,608 + -1.5 855,614 + +0.8 855,640 - -2.4 855,640 - -0.4 855,662 - -0.2 855,739 + +1.7 855,739 + -2.2 855,740 - +6.1 855,740 - -0.4 855,740 - -3.0 855,740 - -0.2 855,740 - -1.8 855,740 - +0.4 855,740 - -2.2 855,740 - -2.0 855,758 + +3.4 855,758 + +0.8 855,759 - -2.0 855,759 - +0.4 855,759 - -2.2 855,770 - -2.5 855,776 + -0.2 855,777 - -1.2 855,777 - -0.2 855,777 - +0.5 855,790 + +0.1 855,806 + -1.2 855,807 - -1.2 855,811 + +0.0 855,811 + -0.8 855,811 + +1.7 855,811 + -1.2 855,811 + +3.4 855,811 + -0.2 855,812 - -1.2 855,812 - -0.2 855,812 - +2.0 855,844 - +2.3 855,876 + +0.6 855,876 + -0.3 855,876 + +2.1 855,883 + -1.8 855,890 + +0.0 855,890 + +1.8 855,897 + -0.4 855,897 + -3.0 855,897 + +0.8 855,897 + +2.4 855,897 + -1.5 855,898 - -0.2 855,898 - -0.4 855,898 - +0.7 855,898 - -0.8 855,898 - -0.2 855,898 - -1.5 855,898 - -2.7 855,928 + +3.4 855,928 + -1.8 855,928 + +0.8 855,929 - -1.6 855,929 - +1.8 855,929 - +0.0 855,929 - +2.4 855,929 - -1.5 855,929 - +2.5 855,929 - -1.8 855,932 + -0.9 855,944 + +1.4 855,945 - -3.2 855,967 - +0.2 856,024 + +1.0 856,091 + Psyr_0752 0.13 -1.5 856,113 - Psyr_0752 0.18 -0.0 856,113 - Psyr_0752 0.18 -0.3 856,179 + Psyr_0752 0.33 -0.8 856,179 + Psyr_0752 0.33 +4.9 856,195 - Psyr_0752 0.36 +0.8
Or see this region's nucleotide sequence