Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0650 and Psyr_0651 are separated by 606 nucleotides Psyr_0651 and Psyr_0652 are separated by 59 nucleotides
Psyr_0650: Psyr_0650 - Protein of unknown function RIO1, at 738,145 to 739,041
_0650
Psyr_0651: Psyr_0651 - Helix-turn-helix, Fis-type, at 739,648 to 739,947
_0651
Psyr_0652: Psyr_0652 - Integrase, catalytic region, at 740,007 to 740,789
_0652
Position (kb) 739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 738.778 kb on + strand, within Psyr_0650 at 738.778 kb on + strand, within Psyr_0650 at 738.779 kb on - strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.923 kb on + strand, within Psyr_0650 at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.251 kb on + strand at 739.251 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.318 kb on + strand at 739.318 kb on + strand at 739.319 kb on - strand at 739.319 kb on - strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.390 kb on - strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.533 kb on + strand at 739.533 kb on + strand at 739.590 kb on - strand at 740.299 kb on + strand, within Psyr_0652 at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.852 kb on - strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 738,778 + Psyr_0650 0.71 +0.6 738,778 + Psyr_0650 0.71 +3.2 738,779 - Psyr_0650 0.71 -1.8 738,817 + Psyr_0650 0.75 +0.8 738,817 + Psyr_0650 0.75 -0.6 738,817 + Psyr_0650 0.75 +1.9 738,818 - Psyr_0650 0.75 +0.1 738,818 - Psyr_0650 0.75 -0.4 738,818 - Psyr_0650 0.75 +2.4 738,838 + Psyr_0650 0.77 -0.0 738,838 + Psyr_0650 0.77 -3.2 738,838 + Psyr_0650 0.77 -0.8 738,839 - Psyr_0650 0.77 +0.8 738,839 - Psyr_0650 0.77 +3.0 738,839 - Psyr_0650 0.77 +0.8 738,839 - Psyr_0650 0.77 -0.8 738,841 + Psyr_0650 0.78 +1.0 738,841 + Psyr_0650 0.78 -1.8 738,842 - Psyr_0650 0.78 +0.9 738,842 - Psyr_0650 0.78 +2.2 738,842 - Psyr_0650 0.78 +0.4 738,923 + Psyr_0650 0.87 +2.4 739,151 + -1.5 739,151 + +1.4 739,151 + -0.1 739,151 + +0.8 739,151 + +1.6 739,151 + +2.3 739,251 + -0.2 739,251 + +1.7 739,291 + +1.5 739,291 + -2.2 739,291 + -1.2 739,291 + -1.8 739,292 - -1.2 739,292 - -1.8 739,292 - +3.0 739,292 - -1.5 739,292 - -1.5 739,318 + +0.9 739,318 + -1.2 739,319 - +2.6 739,319 - -1.2 739,389 + -0.6 739,389 + +2.4 739,389 + +1.0 739,390 - +1.1 739,393 + +6.2 739,393 + -3.0 739,393 + +0.6 739,533 + -3.5 739,533 + +0.2 739,590 - -1.4 740,299 + Psyr_0652 0.37 -3.1 740,794 + -1.2 740,794 + +3.9 740,794 + -1.8 740,794 + -2.8 740,794 + +1.5 740,794 + -1.2 740,794 + -0.8 740,796 + -1.2 740,796 + +1.2 740,796 + +3.2 740,796 + -0.3 740,796 + -2.6 740,796 + -1.8 740,796 + +0.5 740,796 + +2.4 740,852 - -1.8 740,923 + -1.8 740,923 + +0.8 740,923 + +0.8 740,924 - +1.6 740,924 - -0.2 740,924 - +0.4 740,924 - +4.2 740,924 - -2.3 740,924 - -1.1 740,924 - -1.5 740,927 + +0.5 740,927 + +2.3 740,927 + -2.0 740,927 + +1.4 740,927 + +2.6 740,928 - -1.5
Or see this region's nucleotide sequence