Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0587 and Psyr_0588 are separated by 507 nucleotides Psyr_0588 and Psyr_0589 are separated by 89 nucleotides
Psyr_0587: Psyr_0587 - Radical SAM, at 670,307 to 672,616
_0587
Psyr_0588: Psyr_0588 - Transglutaminase-like protein, at 673,124 to 676,402
_0588
Psyr_0589: Psyr_0589 - protein of unknown function DUF403:Protein of unknown function DUF404:Protein of unknown function DUF407, at 676,492 to 678,987
_0589
Position (kb) 673
674
675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 672.134 kb on + strand, within Psyr_0587 at 672.134 kb on + strand, within Psyr_0587 at 672.134 kb on + strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.135 kb on - strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.170 kb on + strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.171 kb on - strand, within Psyr_0587 at 672.359 kb on + strand, within Psyr_0587 at 672.359 kb on + strand, within Psyr_0587 at 672.359 kb on + strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.360 kb on - strand, within Psyr_0587 at 672.663 kb on + strand at 672.663 kb on + strand at 672.663 kb on + strand at 672.663 kb on + strand at 672.663 kb on + strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.664 kb on - strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.667 kb on + strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.668 kb on - strand at 672.805 kb on - strand at 672.906 kb on - strand at 672.906 kb on - strand at 672.906 kb on - strand at 672.965 kb on + strand at 672.966 kb on - strand at 672.969 kb on - strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.076 kb on + strand at 673.077 kb on - strand at 673.077 kb on - strand at 673.077 kb on - strand at 673.096 kb on + strand at 673.135 kb on + strand at 673.135 kb on + strand at 673.135 kb on + strand at 673.136 kb on - strand at 673.160 kb on + strand at 673.167 kb on - strand at 673.244 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.303 kb on + strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.304 kb on - strand at 673.307 kb on + strand at 673.308 kb on - strand at 673.308 kb on - strand at 673.439 kb on + strand at 673.439 kb on + strand at 673.440 kb on - strand at 673.440 kb on - strand at 673.511 kb on + strand, within Psyr_0588 at 673.595 kb on + strand, within Psyr_0588 at 673.595 kb on + strand, within Psyr_0588 at 673.596 kb on - strand, within Psyr_0588 at 673.734 kb on - strand, within Psyr_0588 at 673.826 kb on + strand, within Psyr_0588 at 673.826 kb on + strand, within Psyr_0588 at 673.993 kb on + strand, within Psyr_0588 at 674.025 kb on - strand, within Psyr_0588 at 674.232 kb on - strand, within Psyr_0588 at 674.480 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.483 kb on + strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.484 kb on - strand, within Psyr_0588 at 674.663 kb on + strand, within Psyr_0588 at 674.664 kb on - strand, within Psyr_0588 at 674.664 kb on - strand, within Psyr_0588 at 674.939 kb on + strand, within Psyr_0588 at 674.940 kb on - strand, within Psyr_0588 at 674.975 kb on + strand, within Psyr_0588 at 674.976 kb on - strand, within Psyr_0588 at 674.976 kb on - strand, within Psyr_0588 at 675.044 kb on + strand, within Psyr_0588 at 675.045 kb on - strand, within Psyr_0588 at 675.167 kb on + strand, within Psyr_0588 at 675.167 kb on + strand, within Psyr_0588 at 675.291 kb on + strand, within Psyr_0588 at 675.326 kb on + strand, within Psyr_0588 at 675.327 kb on - strand, within Psyr_0588 at 675.353 kb on + strand, within Psyr_0588 at 675.354 kb on - strand, within Psyr_0588 at 675.429 kb on - strand, within Psyr_0588 at 675.570 kb on - strand, within Psyr_0588 at 675.704 kb on + strand, within Psyr_0588 at 675.881 kb on + strand, within Psyr_0588 at 675.974 kb on + strand, within Psyr_0588 at 675.975 kb on - strand, within Psyr_0588 at 676.034 kb on + strand, within Psyr_0588 at 676.035 kb on - strand, within Psyr_0588 at 676.035 kb on - strand, within Psyr_0588 at 676.223 kb on + strand at 676.224 kb on - strand at 676.249 kb on + strand at 676.250 kb on - strand at 676.254 kb on - strand at 676.254 kb on - strand at 676.254 kb on - strand at 676.400 kb on + strand at 676.457 kb on - strand at 676.470 kb on + strand at 676.470 kb on + strand at 676.470 kb on + strand at 676.470 kb on + strand at 676.471 kb on - strand at 676.471 kb on - strand at 676.471 kb on - strand at 676.471 kb on - strand at 676.530 kb on + strand at 676.530 kb on + strand at 676.530 kb on + strand at 676.530 kb on + strand at 676.531 kb on - strand at 676.531 kb on - strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.534 kb on + strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.535 kb on - strand at 676.589 kb on - strand at 676.675 kb on + strand at 676.675 kb on + strand at 676.675 kb on + strand at 676.675 kb on + strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.676 kb on - strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.684 kb on + strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.685 kb on - strand at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.942 kb on + strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 676.943 kb on - strand, within Psyr_0589 at 677.204 kb on - strand, within Psyr_0589 at 677.204 kb on - strand at 677.218 kb on + strand, within Psyr_0589 at 677.219 kb on - strand, within Psyr_0589 at 677.219 kb on - strand, within Psyr_0589 at 677.219 kb on - strand, within Psyr_0589 at 677.287 kb on + strand, within Psyr_0589 at 677.288 kb on - strand, within Psyr_0589
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 672,134 + Psyr_0587 0.79 +2.8 672,134 + Psyr_0587 0.79 -0.7 672,134 + Psyr_0587 0.79 -2.7 672,135 - Psyr_0587 0.79 -1.2 672,135 - Psyr_0587 0.79 -0.2 672,135 - Psyr_0587 0.79 +0.8 672,135 - Psyr_0587 0.79 -0.5 672,135 - Psyr_0587 0.79 -1.2 672,135 - Psyr_0587 0.79 -0.7 672,135 - Psyr_0587 0.79 -3.1 672,135 - Psyr_0587 0.79 -3.5 672,135 - Psyr_0587 0.79 -0.3 672,170 + Psyr_0587 0.81 +0.3 672,170 + Psyr_0587 0.81 -1.0 672,170 + Psyr_0587 0.81 -1.7 672,170 + Psyr_0587 0.81 +1.5 672,170 + Psyr_0587 0.81 +1.0 672,170 + Psyr_0587 0.81 -2.0 672,170 + Psyr_0587 0.81 -2.2 672,170 + Psyr_0587 0.81 -1.2 672,170 + Psyr_0587 0.81 +0.8 672,171 - Psyr_0587 0.81 -0.4 672,171 - Psyr_0587 0.81 -2.3 672,171 - Psyr_0587 0.81 -2.2 672,171 - Psyr_0587 0.81 -0.7 672,171 - Psyr_0587 0.81 +1.6 672,359 + Psyr_0587 0.89 +0.8 672,359 + Psyr_0587 0.89 +0.0 672,359 + Psyr_0587 0.89 +0.6 672,360 - Psyr_0587 0.89 +4.0 672,360 - Psyr_0587 0.89 -1.5 672,360 - Psyr_0587 0.89 +1.5 672,360 - Psyr_0587 0.89 -0.7 672,663 + -1.5 672,663 + +0.8 672,663 + -2.0 672,663 + +3.0 672,663 + +1.2 672,664 - +1.6 672,664 - -1.5 672,664 - +1.2 672,664 - +0.1 672,664 - +0.6 672,664 - +1.5 672,664 - -1.5 672,664 - +0.8 672,664 - +3.3 672,664 - +1.4 672,667 + +1.1 672,667 + -2.0 672,667 + +0.8 672,667 + -1.0 672,667 + -1.2 672,667 + +1.1 672,667 + -1.5 672,667 + +0.4 672,667 + -1.0 672,667 + +3.2 672,667 + +0.0 672,667 + +3.2 672,667 + -2.3 672,667 + +2.4 672,667 + +1.1 672,667 + -0.2 672,667 + +0.5 672,667 + -0.9 672,667 + -2.2 672,667 + -2.5 672,667 + +0.1 672,667 + -1.2 672,667 + +2.3 672,668 - -0.5 672,668 - -0.7 672,668 - +0.1 672,668 - +0.1 672,668 - -2.2 672,668 - -2.0 672,668 - +3.1 672,668 - -1.7 672,668 - +0.8 672,668 - -2.7 672,668 - -1.0 672,668 - -2.3 672,805 - -0.6 672,906 - +0.3 672,906 - -2.6 672,906 - -0.2 672,965 + -0.7 672,966 - +3.2 672,969 - -2.9 673,076 + -0.2 673,076 + -2.9 673,076 + -1.0 673,076 + +3.0 673,076 + -0.7 673,077 - -1.7 673,077 - -0.5 673,077 - +0.4 673,096 + +0.1 673,135 + +0.4 673,135 + -1.0 673,135 + -2.0 673,136 - -0.6 673,160 + +1.9 673,167 - -0.2 673,244 + -0.6 673,303 + -1.0 673,303 + +0.8 673,303 + +1.4 673,303 + -0.1 673,303 + -1.5 673,303 + +0.7 673,304 - +3.7 673,304 - +3.5 673,304 - -1.5 673,304 - -2.2 673,304 - -0.6 673,304 - -0.2 673,304 - -0.2 673,304 - -2.3 673,304 - -2.0 673,307 + +1.1 673,308 - +2.4 673,308 - +2.3 673,439 + +1.3 673,439 + +0.1 673,440 - -1.2 673,440 - +2.1 673,511 + Psyr_0588 0.12 -1.0 673,595 + Psyr_0588 0.14 -2.0 673,595 + Psyr_0588 0.14 -1.7 673,596 - Psyr_0588 0.14 -2.2 673,734 - Psyr_0588 0.19 -2.3 673,826 + Psyr_0588 0.21 +0.8 673,826 + Psyr_0588 0.21 -1.2 673,993 + Psyr_0588 0.27 +3.5 674,025 - Psyr_0588 0.27 -1.4 674,232 - Psyr_0588 0.34 -2.3 674,480 + Psyr_0588 0.41 +1.8 674,483 + Psyr_0588 0.41 +1.4 674,483 + Psyr_0588 0.41 +0.8 674,483 + Psyr_0588 0.41 -0.7 674,483 + Psyr_0588 0.41 +3.2 674,483 + Psyr_0588 0.41 +3.8 674,483 + Psyr_0588 0.41 +0.5 674,483 + Psyr_0588 0.41 +1.4 674,484 - Psyr_0588 0.41 -2.9 674,484 - Psyr_0588 0.41 -0.7 674,484 - Psyr_0588 0.41 +0.4 674,484 - Psyr_0588 0.41 -1.2 674,663 + Psyr_0588 0.47 +1.5 674,664 - Psyr_0588 0.47 -0.2 674,664 - Psyr_0588 0.47 +2.7 674,939 + Psyr_0588 0.55 -1.2 674,940 - Psyr_0588 0.55 -2.2 674,975 + Psyr_0588 0.56 +2.7 674,976 - Psyr_0588 0.56 -1.2 674,976 - Psyr_0588 0.56 +1.3 675,044 + Psyr_0588 0.59 -0.2 675,045 - Psyr_0588 0.59 +3.1 675,167 + Psyr_0588 0.62 -0.5 675,167 + Psyr_0588 0.62 +3.0 675,291 + Psyr_0588 0.66 -0.4 675,326 + Psyr_0588 0.67 -1.2 675,327 - Psyr_0588 0.67 -1.7 675,353 + Psyr_0588 0.68 -1.5 675,354 - Psyr_0588 0.68 -0.7 675,429 - Psyr_0588 0.70 +1.9 675,570 - Psyr_0588 0.75 +1.4 675,704 + Psyr_0588 0.79 +3.8 675,881 + Psyr_0588 0.84 -1.2 675,974 + Psyr_0588 0.87 +4.7 675,975 - Psyr_0588 0.87 +1.0 676,034 + Psyr_0588 0.89 +5.2 676,035 - Psyr_0588 0.89 +1.3 676,035 - Psyr_0588 0.89 +0.8 676,223 + -1.2 676,224 - +0.4 676,249 + +1.5 676,250 - -0.7 676,254 - -1.1 676,254 - +2.0 676,254 - +3.4 676,400 + -0.5 676,457 - -1.2 676,470 + -0.2 676,470 + +2.9 676,470 + -2.2 676,470 + -0.7 676,471 - -2.2 676,471 - -1.7 676,471 - +0.0 676,471 - -0.4 676,530 + -1.2 676,530 + -0.7 676,530 + +0.3 676,530 + +1.3 676,531 - +2.3 676,531 - -0.1 676,534 + +2.3 676,534 + -0.9 676,534 + -2.5 676,534 + +0.1 676,534 + +0.2 676,534 + -0.5 676,534 + +2.0 676,535 - +1.0 676,535 - -0.3 676,535 - +3.7 676,535 - -2.6 676,535 - -0.5 676,589 - +0.8 676,675 + -0.2 676,675 + -0.2 676,675 + +0.3 676,675 + -1.2 676,676 - +0.8 676,676 - +2.4 676,676 - +2.0 676,676 - -1.7 676,676 - +1.0 676,676 - +0.5 676,676 - +1.4 676,676 - -1.7 676,684 + -2.2 676,684 + -0.2 676,684 + -2.7 676,684 + +1.1 676,684 + +0.6 676,685 - +0.8 676,685 - +1.5 676,685 - -0.9 676,685 - +2.1 676,685 - +0.5 676,942 + Psyr_0589 0.18 +1.0 676,942 + Psyr_0589 0.18 -0.0 676,942 + Psyr_0589 0.18 +1.8 676,942 + Psyr_0589 0.18 -0.2 676,942 + Psyr_0589 0.18 -0.7 676,942 + Psyr_0589 0.18 -1.2 676,942 + Psyr_0589 0.18 -0.7 676,942 + Psyr_0589 0.18 +0.8 676,942 + Psyr_0589 0.18 +1.4 676,942 + Psyr_0589 0.18 +2.8 676,942 + Psyr_0589 0.18 +1.2 676,943 - Psyr_0589 0.18 +1.7 676,943 - Psyr_0589 0.18 -0.2 676,943 - Psyr_0589 0.18 +1.8 676,943 - Psyr_0589 0.18 -1.7 676,943 - Psyr_0589 0.18 +3.5 677,204 - Psyr_0589 0.29 -0.2 677,204 - +0.8 677,218 + Psyr_0589 0.29 -2.2 677,219 - Psyr_0589 0.29 -2.2 677,219 - Psyr_0589 0.29 -1.0 677,219 - Psyr_0589 0.29 +2.9 677,287 + Psyr_0589 0.32 +1.6 677,288 - Psyr_0589 0.32 -2.2
Or see this region's nucleotide sequence