Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0492 and Psyr_0493 overlap by 8 nucleotides Psyr_0493 and Psyr_0494 are separated by 121 nucleotides
Psyr_0492: Psyr_0492 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 528,991 to 534,969
_0492
Psyr_0493: Psyr_0493 - CheW-like protein, at 534,962 to 535,432
_0493
Psyr_0494: Psyr_0494 - Protein of unknown function UPF0061, at 535,554 to 537,017
_0494
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 534.166 kb on + strand, within Psyr_0492 at 534.167 kb on - strand, within Psyr_0492 at 534.183 kb on + strand, within Psyr_0492 at 534.229 kb on + strand, within Psyr_0492 at 534.259 kb on + strand, within Psyr_0492 at 534.645 kb on + strand at 534.898 kb on + strand at 534.899 kb on - strand at 535.115 kb on + strand, within Psyr_0493 at 535.313 kb on + strand, within Psyr_0493 at 535.313 kb on + strand, within Psyr_0493 at 535.313 kb on + strand, within Psyr_0493 at 535.314 kb on - strand, within Psyr_0493 at 535.314 kb on - strand, within Psyr_0493 at 535.430 kb on + strand at 535.430 kb on + strand at 535.430 kb on + strand at 535.431 kb on - strand at 535.435 kb on - strand at 535.486 kb on + strand at 535.486 kb on + strand at 535.486 kb on + strand at 535.487 kb on - strand at 535.490 kb on + strand at 535.540 kb on - strand at 535.720 kb on + strand, within Psyr_0494 at 535.720 kb on + strand, within Psyr_0494 at 535.720 kb on + strand, within Psyr_0494 at 535.720 kb on + strand, within Psyr_0494 at 535.720 kb on + strand, within Psyr_0494 at 535.720 kb on + strand, within Psyr_0494 at 535.721 kb on - strand, within Psyr_0494 at 535.721 kb on - strand, within Psyr_0494 at 535.735 kb on + strand, within Psyr_0494 at 535.736 kb on - strand, within Psyr_0494 at 535.736 kb on - strand, within Psyr_0494 at 535.802 kb on + strand, within Psyr_0494 at 535.921 kb on + strand, within Psyr_0494 at 535.921 kb on + strand, within Psyr_0494 at 535.921 kb on + strand, within Psyr_0494 at 535.921 kb on + strand, within Psyr_0494 at 535.922 kb on - strand, within Psyr_0494 at 536.026 kb on + strand, within Psyr_0494 at 536.027 kb on - strand, within Psyr_0494 at 536.038 kb on + strand, within Psyr_0494 at 536.241 kb on - strand, within Psyr_0494 at 536.293 kb on + strand, within Psyr_0494 at 536.294 kb on - strand, within Psyr_0494 at 536.356 kb on + strand, within Psyr_0494
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 534,166 + Psyr_0492 0.87 -2.4 534,167 - Psyr_0492 0.87 +0.4 534,183 + Psyr_0492 0.87 -1.3 534,229 + Psyr_0492 0.88 +1.6 534,259 + Psyr_0492 0.88 +2.6 534,645 + -2.1 534,898 + +2.2 534,899 - +1.6 535,115 + Psyr_0493 0.32 -0.4 535,313 + Psyr_0493 0.75 +0.5 535,313 + Psyr_0493 0.75 +0.9 535,313 + Psyr_0493 0.75 -1.1 535,314 - Psyr_0493 0.75 -1.7 535,314 - Psyr_0493 0.75 -2.1 535,430 + +0.4 535,430 + -2.3 535,430 + -0.3 535,431 - +3.6 535,435 - +1.9 535,486 + -1.9 535,486 + +0.5 535,486 + +2.0 535,487 - +1.4 535,490 + -1.7 535,540 - -1.7 535,720 + Psyr_0494 0.11 +0.9 535,720 + Psyr_0494 0.11 -1.7 535,720 + Psyr_0494 0.11 -0.1 535,720 + Psyr_0494 0.11 -0.1 535,720 + Psyr_0494 0.11 -1.1 535,720 + Psyr_0494 0.11 -1.0 535,721 - Psyr_0494 0.11 +1.2 535,721 - Psyr_0494 0.11 +1.5 535,735 + Psyr_0494 0.12 +1.8 535,736 - Psyr_0494 0.12 -1.9 535,736 - Psyr_0494 0.12 -1.4 535,802 + Psyr_0494 0.17 +1.1 535,921 + Psyr_0494 0.25 -1.1 535,921 + Psyr_0494 0.25 -1.2 535,921 + Psyr_0494 0.25 +0.9 535,921 + Psyr_0494 0.25 -2.3 535,922 - Psyr_0494 0.25 -0.1 536,026 + Psyr_0494 0.32 -0.4 536,027 - Psyr_0494 0.32 -0.1 536,038 + Psyr_0494 0.33 +5.9 536,241 - Psyr_0494 0.47 -1.7 536,293 + Psyr_0494 0.50 +0.7 536,294 - Psyr_0494 0.51 -2.7 536,356 + Psyr_0494 0.55 +1.2
Or see this region's nucleotide sequence