Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0491

Experiment: apoplastic; Green bean; 13 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0489 and Psyr_0490 are separated by 14 nucleotidesPsyr_0490 and Psyr_0491 are separated by 50 nucleotidesPsyr_0491 and Psyr_0492 are separated by 47 nucleotides Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296 _0489 Psyr_0490: Psyr_0490 - CheW-like protein, at 526,311 to 526,850 _0490 Psyr_0491: Psyr_0491 - chemotaxis sensory transducer, at 526,901 to 528,943 _0491 Psyr_0492: Psyr_0492 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 528,991 to 534,969 _0492 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 525.912 kb on - strandat 525.912 kb on - strandat 525.973 kb on + strand, within Psyr_0489at 526.156 kb on - strand, within Psyr_0489at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.745 kb on + strand, within Psyr_0490at 526.745 kb on + strand, within Psyr_0490at 526.746 kb on - strand, within Psyr_0490at 526.746 kb on - strand, within Psyr_0490at 526.773 kb on - strand, within Psyr_0490at 526.848 kb on + strandat 526.848 kb on + strandat 526.849 kb on - strandat 526.849 kb on - strandat 526.849 kb on - strandat 526.907 kb on - strandat 526.909 kb on + strandat 526.909 kb on + strandat 526.909 kb on + strandat 526.909 kb on + strandat 526.951 kb on + strandat 526.952 kb on - strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.042 kb on + strandat 527.043 kb on - strandat 527.230 kb on - strand, within Psyr_0491at 527.599 kb on - strand, within Psyr_0491at 527.709 kb on - strand, within Psyr_0491at 528.056 kb on + strand, within Psyr_0491at 528.056 kb on + strand, within Psyr_0491at 528.057 kb on - strand, within Psyr_0491at 528.057 kb on - strand, within Psyr_0491at 528.057 kb on - strand, within Psyr_0491at 528.742 kb on + strandat 528.742 kb on + strandat 528.742 kb on + strandat 528.742 kb on + strandat 528.743 kb on - strandat 528.946 kb on + strandat 528.946 kb on + strandat 528.947 kb on - strandat 528.947 kb on - strandat 529.009 kb on + strandat 529.009 kb on + strandat 529.009 kb on + strandat 529.010 kb on - strandat 529.010 kb on - strandat 529.013 kb on + strandat 529.013 kb on + strandat 529.013 kb on + strandat 529.014 kb on - strandat 529.014 kb on - strandat 529.014 kb on - strandat 529.014 kb on - strandat 529.171 kb on + strandat 529.171 kb on + strandat 529.171 kb on + strandat 529.172 kb on - strandat 529.295 kb on - strandat 529.565 kb on - strandat 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.801 kb on + strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.802 kb on - strand, within Psyr_0492at 529.855 kb on + strand, within Psyr_0492at 529.855 kb on + strand, within Psyr_0492

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days
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525,912 - -0.1
525,912 - -0.1
525,973 + Psyr_0489 0.11 +4.5
526,156 - Psyr_0489 0.61 +1.3
526,651 + Psyr_0490 0.63 -2.6
526,651 + Psyr_0490 0.63 -1.4
526,651 + Psyr_0490 0.63 -1.1
526,651 + Psyr_0490 0.63 +1.3
526,651 + Psyr_0490 0.63 -1.2
526,651 + Psyr_0490 0.63 -1.1
526,651 + Psyr_0490 0.63 -2.1
526,651 + Psyr_0490 0.63 +1.9
526,652 - Psyr_0490 0.63 +3.3
526,652 - Psyr_0490 0.63 +1.5
526,652 - Psyr_0490 0.63 -1.1
526,652 - Psyr_0490 0.63 +2.5
526,652 - Psyr_0490 0.63 +2.1
526,745 + Psyr_0490 0.80 +0.9
526,745 + Psyr_0490 0.80 -0.7
526,746 - Psyr_0490 0.81 -0.1
526,746 - Psyr_0490 0.81 +0.9
526,773 - Psyr_0490 0.86 -0.7
526,848 + -0.7
526,848 + +2.8
526,849 - +0.8
526,849 - -1.4
526,849 - -1.6
526,907 - +1.6
526,909 + +2.0
526,909 + -1.4
526,909 + +3.3
526,909 + +0.6
526,951 + -1.1
526,952 - -0.1
527,042 + -1.1
527,042 + -0.7
527,042 + -0.4
527,042 + +2.1
527,042 + -0.1
527,042 + -0.6
527,043 - -1.9
527,230 - Psyr_0491 0.16 -1.1
527,599 - Psyr_0491 0.34 +2.1
527,709 - Psyr_0491 0.40 +1.2
528,056 + Psyr_0491 0.57 -0.3
528,056 + Psyr_0491 0.57 -0.6
528,057 - Psyr_0491 0.57 -1.7
528,057 - Psyr_0491 0.57 -2.3
528,057 - Psyr_0491 0.57 +1.0
528,742 + -2.3
528,742 + -2.7
528,742 + +0.9
528,742 + -1.1
528,743 - +0.9
528,946 + +0.9
528,946 + -1.4
528,947 - -1.9
528,947 - -1.4
529,009 + +0.9
529,009 + -1.1
529,009 + +2.4
529,010 - -1.4
529,010 - -1.7
529,013 + -1.1
529,013 + -0.7
529,013 + -1.6
529,014 - +3.5
529,014 - -0.0
529,014 - +1.8
529,014 - -0.1
529,171 + +2.8
529,171 + +0.9
529,171 + -1.9
529,172 - +2.3
529,295 - +1.8
529,565 - +1.8
529,801 + Psyr_0492 0.14 +3.2
529,801 + Psyr_0492 0.14 -2.6
529,801 + Psyr_0492 0.14 +0.3
529,801 + Psyr_0492 0.14 -2.3
529,801 + Psyr_0492 0.14 -0.7
529,801 + Psyr_0492 0.14 -1.8
529,801 + Psyr_0492 0.14 -1.3
529,801 + Psyr_0492 0.14 +1.4
529,801 + Psyr_0492 0.14 +0.3
529,801 + Psyr_0492 0.14 -1.9
529,801 + Psyr_0492 0.14 -2.3
529,801 + Psyr_0492 0.14 -0.1
529,802 - Psyr_0492 0.14 +1.5
529,802 - Psyr_0492 0.14 +0.3
529,802 - Psyr_0492 0.14 -1.7
529,802 - Psyr_0492 0.14 -0.1
529,802 - Psyr_0492 0.14 +0.9
529,855 + Psyr_0492 0.14 -1.1
529,855 + Psyr_0492 0.14 +2.4

Or see this region's nucleotide sequence