Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0345 and Psyr_0346 overlap by 4 nucleotides Psyr_0346 and Psyr_0347 are separated by 59 nucleotides Psyr_0347 and Psyr_0348 are separated by 137 nucleotides
Psyr_0345: Psyr_0345 - Secretion protein HlyD, at 367,896 to 368,981
_0345
Psyr_0346: Psyr_0346 - Acriflavin resistance protein, at 368,978 to 372,079
_0346
Psyr_0347: Psyr_0347 - hypothetical protein, at 372,139 to 372,636
_0347
Psyr_0348: Psyr_0348 - conserved hypothetical protein, at 372,774 to 373,400
_0348
Position (kb) 368
369
370
371
372
373 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 368.128 kb on + strand, within Psyr_0345 at 368.129 kb on - strand, within Psyr_0345 at 368.534 kb on + strand, within Psyr_0345 at 368.566 kb on + strand, within Psyr_0345 at 368.566 kb on + strand, within Psyr_0345 at 368.567 kb on - strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.654 kb on + strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.655 kb on - strand, within Psyr_0345 at 368.723 kb on - strand, within Psyr_0345 at 368.850 kb on - strand, within Psyr_0345 at 369.035 kb on + strand at 369.036 kb on - strand at 369.074 kb on + strand at 369.224 kb on + strand at 369.225 kb on - strand at 369.225 kb on - strand at 369.225 kb on - strand at 369.225 kb on - strand at 369.236 kb on + strand at 369.236 kb on + strand at 369.236 kb on + strand at 369.236 kb on + strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.237 kb on - strand at 369.239 kb on - strand at 369.269 kb on + strand at 369.269 kb on + strand at 369.269 kb on + strand at 369.270 kb on - strand at 369.270 kb on - strand at 369.315 kb on - strand, within Psyr_0346 at 369.405 kb on - strand, within Psyr_0346 at 369.416 kb on + strand, within Psyr_0346 at 369.416 kb on + strand, within Psyr_0346 at 369.416 kb on + strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.417 kb on - strand, within Psyr_0346 at 369.461 kb on + strand, within Psyr_0346 at 369.461 kb on + strand, within Psyr_0346 at 369.461 kb on + strand, within Psyr_0346 at 369.462 kb on - strand, within Psyr_0346 at 369.462 kb on - strand, within Psyr_0346 at 369.462 kb on - strand, within Psyr_0346 at 369.545 kb on + strand, within Psyr_0346 at 369.545 kb on + strand, within Psyr_0346 at 369.546 kb on - strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.898 kb on + strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.899 kb on - strand, within Psyr_0346 at 369.907 kb on + strand, within Psyr_0346 at 369.908 kb on - strand, within Psyr_0346 at 370.092 kb on + strand, within Psyr_0346 at 370.121 kb on + strand, within Psyr_0346 at 370.121 kb on + strand, within Psyr_0346 at 370.121 kb on + strand, within Psyr_0346 at 370.262 kb on + strand, within Psyr_0346 at 370.262 kb on + strand, within Psyr_0346 at 370.262 kb on + strand, within Psyr_0346 at 370.262 kb on + strand at 370.263 kb on - strand, within Psyr_0346 at 370.263 kb on - strand, within Psyr_0346 at 370.268 kb on + strand, within Psyr_0346 at 370.268 kb on + strand, within Psyr_0346 at 370.269 kb on - strand, within Psyr_0346 at 370.361 kb on + strand, within Psyr_0346 at 370.361 kb on + strand, within Psyr_0346 at 370.361 kb on + strand, within Psyr_0346 at 370.362 kb on - strand, within Psyr_0346 at 370.362 kb on - strand, within Psyr_0346 at 370.497 kb on + strand, within Psyr_0346 at 370.497 kb on + strand, within Psyr_0346 at 370.498 kb on - strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.757 kb on + strand, within Psyr_0346 at 370.758 kb on - strand, within Psyr_0346 at 370.758 kb on - strand, within Psyr_0346 at 370.820 kb on + strand, within Psyr_0346 at 370.821 kb on - strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.922 kb on + strand, within Psyr_0346 at 370.923 kb on - strand, within Psyr_0346 at 371.052 kb on + strand, within Psyr_0346 at 371.053 kb on - strand, within Psyr_0346 at 371.053 kb on - strand, within Psyr_0346 at 371.053 kb on - strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.066 kb on + strand, within Psyr_0346 at 371.067 kb on - strand, within Psyr_0346 at 371.067 kb on - strand, within Psyr_0346 at 371.213 kb on + strand, within Psyr_0346 at 371.213 kb on + strand, within Psyr_0346 at 371.213 kb on + strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.214 kb on - strand, within Psyr_0346 at 371.490 kb on - strand, within Psyr_0346 at 371.780 kb on + strand at 371.780 kb on + strand at 371.781 kb on - strand at 371.781 kb on - strand at 371.781 kb on - strand at 371.781 kb on - strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.984 kb on + strand at 371.985 kb on - strand at 371.985 kb on - strand at 371.985 kb on - strand at 372.199 kb on + strand, within Psyr_0347 at 372.247 kb on - strand, within Psyr_0347 at 372.386 kb on + strand, within Psyr_0347 at 372.400 kb on + strand, within Psyr_0347 at 372.400 kb on + strand, within Psyr_0347 at 372.402 kb on + strand, within Psyr_0347 at 372.457 kb on - strand, within Psyr_0347 at 372.519 kb on + strand, within Psyr_0347 at 372.623 kb on + strand at 372.623 kb on + strand at 372.623 kb on + strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.624 kb on - strand at 372.681 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.689 kb on + strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.690 kb on - strand at 372.708 kb on + strand at 372.708 kb on + strand at 372.708 kb on + strand at 372.709 kb on - strand at 372.709 kb on - strand at 372.749 kb on + strand at 372.749 kb on + strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.838 kb on + strand, within Psyr_0348 at 372.839 kb on - strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.841 kb on + strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.842 kb on - strand, within Psyr_0348 at 372.905 kb on - strand, within Psyr_0348
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 368,128 + Psyr_0345 0.21 -1.1 368,129 - Psyr_0345 0.21 -1.6 368,534 + Psyr_0345 0.59 -1.4 368,566 + Psyr_0345 0.62 +0.0 368,566 + Psyr_0345 0.62 +0.9 368,567 - Psyr_0345 0.62 -1.9 368,654 + Psyr_0345 0.70 +1.5 368,654 + Psyr_0345 0.70 -1.4 368,654 + Psyr_0345 0.70 -0.7 368,655 - Psyr_0345 0.70 -3.4 368,655 - Psyr_0345 0.70 +0.1 368,655 - Psyr_0345 0.70 +0.5 368,723 - Psyr_0345 0.76 -0.7 368,850 - Psyr_0345 0.88 +1.2 369,035 + -3.1 369,036 - -1.1 369,074 + -2.1 369,224 + +0.9 369,225 - +0.2 369,225 - -0.5 369,225 - -1.2 369,225 - -1.7 369,236 + +2.8 369,236 + +3.6 369,236 + -0.5 369,236 + +2.1 369,237 - -0.1 369,237 - -2.6 369,237 - +1.0 369,237 - -1.7 369,237 - +0.3 369,237 - -4.1 369,237 - -1.4 369,239 - +2.1 369,269 + -2.9 369,269 + -2.6 369,269 + -0.1 369,270 - -2.1 369,270 - +0.9 369,315 - Psyr_0346 0.11 +1.0 369,405 - Psyr_0346 0.14 -1.7 369,416 + Psyr_0346 0.14 +2.1 369,416 + Psyr_0346 0.14 -3.2 369,416 + Psyr_0346 0.14 -0.7 369,417 - Psyr_0346 0.14 -0.5 369,417 - Psyr_0346 0.14 +1.4 369,417 - Psyr_0346 0.14 -1.9 369,417 - Psyr_0346 0.14 +0.9 369,461 + Psyr_0346 0.16 -0.4 369,461 + Psyr_0346 0.16 -0.5 369,461 + Psyr_0346 0.16 -1.4 369,462 - Psyr_0346 0.16 -2.3 369,462 - Psyr_0346 0.16 +3.2 369,462 - Psyr_0346 0.16 +2.4 369,545 + Psyr_0346 0.18 +1.3 369,545 + Psyr_0346 0.18 -3.1 369,546 - Psyr_0346 0.18 +1.0 369,898 + Psyr_0346 0.30 -1.7 369,898 + Psyr_0346 0.30 +2.7 369,898 + Psyr_0346 0.30 +1.9 369,898 + Psyr_0346 0.30 -1.9 369,899 - Psyr_0346 0.30 +2.2 369,899 - Psyr_0346 0.30 -0.4 369,899 - Psyr_0346 0.30 +0.5 369,899 - Psyr_0346 0.30 +4.3 369,899 - Psyr_0346 0.30 -2.6 369,907 + Psyr_0346 0.30 -0.2 369,908 - Psyr_0346 0.30 +0.9 370,092 + Psyr_0346 0.36 +0.2 370,121 + Psyr_0346 0.37 +2.9 370,121 + Psyr_0346 0.37 -1.9 370,121 + Psyr_0346 0.37 +0.4 370,262 + Psyr_0346 0.41 -0.2 370,262 + Psyr_0346 0.41 -1.3 370,262 + Psyr_0346 0.41 +2.4 370,262 + -0.1 370,263 - Psyr_0346 0.41 +1.3 370,263 - Psyr_0346 0.41 +1.8 370,268 + Psyr_0346 0.42 -3.4 370,268 + Psyr_0346 0.42 -3.0 370,269 - Psyr_0346 0.42 +0.9 370,361 + Psyr_0346 0.45 -2.7 370,361 + Psyr_0346 0.45 -2.3 370,361 + Psyr_0346 0.45 +1.8 370,362 - Psyr_0346 0.45 -0.4 370,362 - Psyr_0346 0.45 +1.9 370,497 + Psyr_0346 0.49 +3.3 370,497 + Psyr_0346 0.49 +2.9 370,498 - Psyr_0346 0.49 -1.1 370,757 + Psyr_0346 0.57 +0.2 370,757 + Psyr_0346 0.57 +3.9 370,757 + Psyr_0346 0.57 +2.1 370,757 + Psyr_0346 0.57 +0.9 370,758 - Psyr_0346 0.57 +1.6 370,758 - Psyr_0346 0.57 +0.7 370,820 + Psyr_0346 0.59 +3.3 370,821 - Psyr_0346 0.59 -1.7 370,922 + Psyr_0346 0.63 -2.6 370,922 + Psyr_0346 0.63 +0.9 370,922 + Psyr_0346 0.63 +2.6 370,922 + Psyr_0346 0.63 -0.3 370,922 + Psyr_0346 0.63 +3.4 370,922 + Psyr_0346 0.63 +0.1 370,923 - Psyr_0346 0.63 -0.5 371,052 + Psyr_0346 0.67 +0.7 371,053 - Psyr_0346 0.67 -0.9 371,053 - Psyr_0346 0.67 +1.7 371,053 - Psyr_0346 0.67 -1.9 371,066 + Psyr_0346 0.67 +0.3 371,066 + Psyr_0346 0.67 +0.3 371,066 + Psyr_0346 0.67 +1.9 371,066 + Psyr_0346 0.67 -0.7 371,066 + Psyr_0346 0.67 +1.0 371,067 - Psyr_0346 0.67 -3.3 371,067 - Psyr_0346 0.67 +0.6 371,213 + Psyr_0346 0.72 -1.4 371,213 + Psyr_0346 0.72 +2.1 371,213 + Psyr_0346 0.72 -0.5 371,214 - Psyr_0346 0.72 -0.5 371,214 - Psyr_0346 0.72 +0.2 371,214 - Psyr_0346 0.72 +2.3 371,214 - Psyr_0346 0.72 -1.4 371,214 - Psyr_0346 0.72 +3.5 371,214 - Psyr_0346 0.72 -0.8 371,214 - Psyr_0346 0.72 +2.1 371,490 - Psyr_0346 0.81 -2.3 371,780 + -1.4 371,780 + -0.8 371,781 - -0.7 371,781 - -0.7 371,781 - -1.7 371,781 - +1.3 371,984 + -1.2 371,984 + -1.4 371,984 + -2.1 371,984 + +0.7 371,984 + +0.5 371,984 + -1.6 371,985 - -2.7 371,985 - -0.2 371,985 - -0.1 372,199 + Psyr_0347 0.12 +1.2 372,247 - Psyr_0347 0.22 +0.1 372,386 + Psyr_0347 0.50 +1.6 372,400 + Psyr_0347 0.52 +0.3 372,400 + Psyr_0347 0.52 -0.1 372,402 + Psyr_0347 0.53 -1.3 372,457 - Psyr_0347 0.64 +0.9 372,519 + Psyr_0347 0.76 -1.4 372,623 + +0.9 372,623 + +0.2 372,623 + -2.3 372,624 - -1.8 372,624 - +0.2 372,624 - +1.9 372,624 - -3.5 372,624 - +1.3 372,624 - -0.6 372,624 - -1.3 372,624 - +0.2 372,624 - -2.4 372,624 - +1.5 372,624 - +1.1 372,624 - -2.7 372,624 - -0.9 372,624 - -2.2 372,624 - +0.4 372,681 + +0.3 372,689 + -1.1 372,689 + +1.3 372,689 + -1.4 372,689 + +0.7 372,689 + +3.2 372,689 + +2.2 372,689 + -3.0 372,689 + +2.2 372,689 + +2.0 372,690 - -1.9 372,690 - +0.5 372,690 - -1.4 372,690 - -1.0 372,708 + -1.3 372,708 + +3.1 372,708 + +0.4 372,709 - +1.6 372,709 - -0.1 372,749 + -0.1 372,749 + +0.9 372,750 - -2.1 372,750 - +1.7 372,750 - +1.4 372,750 - +3.1 372,838 + Psyr_0348 0.10 -1.1 372,839 - Psyr_0348 0.10 +0.9 372,841 + Psyr_0348 0.11 +1.0 372,841 + Psyr_0348 0.11 -2.1 372,841 + Psyr_0348 0.11 +2.8 372,841 + Psyr_0348 0.11 -2.1 372,842 - Psyr_0348 0.11 -0.4 372,842 - Psyr_0348 0.11 +1.4 372,842 - Psyr_0348 0.11 -2.4 372,842 - Psyr_0348 0.11 -1.8 372,905 - Psyr_0348 0.21 +2.2
Or see this region's nucleotide sequence