Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0340

Experiment: apoplastic; Green bean; 13 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0339 and Psyr_0340 are separated by 38 nucleotidesPsyr_0340 and Psyr_0341 are separated by 625 nucleotidesPsyr_0341 and Psyr_0342 are separated by 89 nucleotides Psyr_0339: Psyr_0339 - Binding-protein-dependent transport systems inner membrane component, at 361,263 to 362,198 _0339 Psyr_0340: Psyr_0340 - ABC transporter, periplasmic substrate-binding protein, at 362,237 to 363,256 _0340 Psyr_0341: Psyr_0341 - hypothetical protein, at 363,882 to 364,115 _0341 Psyr_0342: Psyr_0342 - hypothetical protein, at 364,205 to 365,200 _0342 Position (kb) 362 363 364Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 361.253 kb on + strandat 361.253 kb on + strandat 361.258 kb on - strandat 361.273 kb on + strandat 361.274 kb on - strandat 361.274 kb on - strandat 361.276 kb on + strandat 361.276 kb on + strandat 361.276 kb on + strandat 361.277 kb on - strandat 361.277 kb on - strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.300 kb on + strandat 361.300 kb on + strandat 361.300 kb on + strandat 361.363 kb on - strand, within Psyr_0339at 361.558 kb on - strand, within Psyr_0339at 361.558 kb on - strand, within Psyr_0339at 361.626 kb on + strand, within Psyr_0339at 361.747 kb on + strand, within Psyr_0339at 361.835 kb on + strand, within Psyr_0339at 361.835 kb on + strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.839 kb on + strand, within Psyr_0339at 361.840 kb on - strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.218 kb on + strandat 362.606 kb on + strand, within Psyr_0340at 362.606 kb on + strand, within Psyr_0340at 362.606 kb on + strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.888 kb on - strand, within Psyr_0340at 362.888 kb on - strand, within Psyr_0340at 362.888 kb on - strand, within Psyr_0340at 362.903 kb on + strand, within Psyr_0340at 362.903 kb on + strand, within Psyr_0340at 362.903 kb on + strand, within Psyr_0340at 362.904 kb on - strand, within Psyr_0340at 362.904 kb on - strand, within Psyr_0340at 362.942 kb on + strand, within Psyr_0340at 362.942 kb on + strand, within Psyr_0340at 362.942 kb on + strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.981 kb on + strand, within Psyr_0340at 362.981 kb on + strand, within Psyr_0340at 362.981 kb on + strand, within Psyr_0340at 362.982 kb on - strand, within Psyr_0340at 362.982 kb on - strand, within Psyr_0340at 362.993 kb on + strand, within Psyr_0340at 362.993 kb on + strand, within Psyr_0340at 362.993 kb on + strand, within Psyr_0340at 362.994 kb on - strand, within Psyr_0340at 362.994 kb on - strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.159 kb on - strandat 363.159 kb on - strandat 363.323 kb on + strandat 363.323 kb on + strandat 363.323 kb on + strandat 363.323 kb on + strandat 363.324 kb on - strandat 363.324 kb on - strandat 363.348 kb on - strandat 363.401 kb on + strandat 363.401 kb on + strandat 363.401 kb on + strandat 363.401 kb on + strandat 363.402 kb on - strandat 363.452 kb on + strandat 363.453 kb on - strandat 363.453 kb on - strandat 363.453 kb on - strandat 363.453 kb on - strandat 363.453 kb on - strandat 363.453 kb on - strandat 363.453 kb on - strandat 363.544 kb on - strandat 363.606 kb on + strandat 363.606 kb on + strandat 363.607 kb on - strandat 363.658 kb on + strandat 363.658 kb on + strandat 363.658 kb on + strandat 363.658 kb on + strandat 363.659 kb on - strandat 363.659 kb on - strandat 363.659 kb on - strandat 363.659 kb on - strandat 363.659 kb on - strandat 363.839 kb on - strandat 363.869 kb on - strandat 363.869 kb on - strandat 363.876 kb on + strandat 363.877 kb on - strandat 363.952 kb on + strand, within Psyr_0341at 363.952 kb on + strand, within Psyr_0341at 363.952 kb on + strand, within Psyr_0341at 363.952 kb on + strand, within Psyr_0341at 363.953 kb on - strand, within Psyr_0341at 363.953 kb on - strand, within Psyr_0341at 363.953 kb on - strand, within Psyr_0341at 363.953 kb on - strand, within Psyr_0341at 363.953 kb on - strand, within Psyr_0341at 363.979 kb on - strand, within Psyr_0341at 364.113 kb on + strandat 364.113 kb on + strandat 364.122 kb on + strandat 364.122 kb on + strandat 364.122 kb on + strandat 364.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days
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361,253 + +2.7
361,253 + -1.1
361,258 - -2.3
361,273 + -0.4
361,274 - -2.3
361,274 - +2.1
361,276 + -0.7
361,276 + +0.6
361,276 + +1.5
361,277 - -0.3
361,277 - +2.1
361,298 + +3.3
361,298 + +1.7
361,298 + -0.4
361,298 + -0.7
361,298 + +2.0
361,300 + -1.2
361,300 + -2.7
361,300 + -0.9
361,363 - Psyr_0339 0.11 +1.0
361,558 - Psyr_0339 0.32 -0.7
361,558 - Psyr_0339 0.32 +0.1
361,626 + Psyr_0339 0.39 +0.6
361,747 + Psyr_0339 0.52 -0.4
361,835 + Psyr_0339 0.61 -1.4
361,835 + Psyr_0339 0.61 -0.2
361,836 - Psyr_0339 0.61 +3.1
361,836 - Psyr_0339 0.61 -1.4
361,836 - Psyr_0339 0.61 +2.7
361,836 - Psyr_0339 0.61 +0.9
361,839 + Psyr_0339 0.62 -1.1
361,840 - Psyr_0339 0.62 +0.4
361,890 + Psyr_0339 0.67 +1.2
361,890 + Psyr_0339 0.67 -3.1
361,890 + Psyr_0339 0.67 -1.1
361,890 + Psyr_0339 0.67 +2.3
361,890 + Psyr_0339 0.67 -2.4
361,890 + Psyr_0339 0.67 -0.1
361,890 + Psyr_0339 0.67 +0.9
361,890 + Psyr_0339 0.67 -1.1
361,890 + Psyr_0339 0.67 +0.3
361,890 + Psyr_0339 0.67 -1.1
361,890 + Psyr_0339 0.67 -0.1
361,890 + Psyr_0339 0.67 +3.5
361,890 + Psyr_0339 0.67 -2.3
361,890 + Psyr_0339 0.67 -1.8
361,891 - Psyr_0339 0.67 -3.5
361,891 - Psyr_0339 0.67 -0.6
361,891 - Psyr_0339 0.67 +0.0
361,891 - Psyr_0339 0.67 +1.4
361,891 - Psyr_0339 0.67 -1.1
361,891 - Psyr_0339 0.67 +1.6
361,891 - Psyr_0339 0.67 -0.1
361,891 - Psyr_0339 0.67 +3.9
362,052 + Psyr_0339 0.84 +0.9
362,052 + Psyr_0339 0.84 -0.1
362,052 + Psyr_0339 0.84 +0.3
362,052 + Psyr_0339 0.84 -1.1
362,052 + Psyr_0339 0.84 +0.6
362,053 - Psyr_0339 0.84 -1.1
362,053 - Psyr_0339 0.84 +0.8
362,053 - Psyr_0339 0.84 -3.2
362,053 - Psyr_0339 0.84 -0.0
362,079 + Psyr_0339 0.87 -2.0
362,079 + Psyr_0339 0.87 -2.1
362,079 + Psyr_0339 0.87 -2.8
362,079 + Psyr_0339 0.87 +1.6
362,079 + Psyr_0339 0.87 +2.5
362,079 + Psyr_0339 0.87 -0.4
362,079 + Psyr_0339 0.87 +1.3
362,079 + Psyr_0339 0.87 +0.9
362,080 - Psyr_0339 0.87 +3.2
362,080 - Psyr_0339 0.87 -1.4
362,080 - Psyr_0339 0.87 +2.7
362,080 - Psyr_0339 0.87 -1.7
362,080 - Psyr_0339 0.87 -0.8
362,080 - Psyr_0339 0.87 +0.6
362,080 - Psyr_0339 0.87 +1.9
362,218 + +0.3
362,606 + Psyr_0340 0.36 -2.4
362,606 + Psyr_0340 0.36 -0.1
362,606 + Psyr_0340 0.36 -0.9
362,607 - Psyr_0340 0.36 +3.6
362,607 - Psyr_0340 0.36 -1.1
362,607 - Psyr_0340 0.36 -0.7
362,607 - Psyr_0340 0.36 +1.8
362,607 - Psyr_0340 0.36 +2.0
362,747 + Psyr_0340 0.50 +1.7
362,747 + Psyr_0340 0.50 +0.7
362,747 + Psyr_0340 0.50 +5.0
362,747 + Psyr_0340 0.50 +0.9
362,748 - Psyr_0340 0.50 -1.9
362,748 - Psyr_0340 0.50 +0.4
362,748 - Psyr_0340 0.50 -2.6
362,748 - Psyr_0340 0.50 +1.1
362,748 - Psyr_0340 0.50 +1.1
362,887 + Psyr_0340 0.64 -1.4
362,887 + Psyr_0340 0.64 -1.3
362,887 + Psyr_0340 0.64 +1.2
362,887 + Psyr_0340 0.64 -0.7
362,887 + Psyr_0340 0.64 +2.4
362,887 + Psyr_0340 0.64 -2.6
362,888 - Psyr_0340 0.64 -1.9
362,888 - Psyr_0340 0.64 -0.9
362,888 - Psyr_0340 0.64 +0.5
362,903 + Psyr_0340 0.65 +1.4
362,903 + Psyr_0340 0.65 +2.3
362,903 + Psyr_0340 0.65 -2.9
362,904 - Psyr_0340 0.65 +2.2
362,904 - Psyr_0340 0.65 +2.1
362,942 + Psyr_0340 0.69 -3.4
362,942 + Psyr_0340 0.69 -0.7
362,942 + Psyr_0340 0.69 -2.7
362,943 - Psyr_0340 0.69 -1.9
362,943 - Psyr_0340 0.69 +4.3
362,943 - Psyr_0340 0.69 +1.4
362,943 - Psyr_0340 0.69 +0.9
362,943 - Psyr_0340 0.69 +0.9
362,943 - Psyr_0340 0.69 -0.1
362,981 + Psyr_0340 0.73 -1.8
362,981 + Psyr_0340 0.73 -0.4
362,981 + Psyr_0340 0.73 +1.2
362,982 - Psyr_0340 0.73 -0.5
362,982 - Psyr_0340 0.73 -0.7
362,993 + Psyr_0340 0.74 -0.1
362,993 + Psyr_0340 0.74 +2.4
362,993 + Psyr_0340 0.74 -0.6
362,994 - Psyr_0340 0.74 +1.6
362,994 - Psyr_0340 0.74 -1.4
363,056 + Psyr_0340 0.80 -0.2
363,056 + Psyr_0340 0.80 -0.7
363,056 + Psyr_0340 0.80 +3.4
363,056 + Psyr_0340 0.80 +2.6
363,056 + Psyr_0340 0.80 +2.1
363,056 + Psyr_0340 0.80 +1.5
363,056 + Psyr_0340 0.80 +0.7
363,057 - Psyr_0340 0.80 -0.1
363,057 - Psyr_0340 0.80 +1.4
363,057 - Psyr_0340 0.80 +0.9
363,057 - Psyr_0340 0.80 -3.7
363,057 - Psyr_0340 0.80 -2.6
363,159 - -0.1
363,159 - +0.4
363,323 + -2.3
363,323 + -1.4
363,323 + -0.7
363,323 + -0.1
363,324 - -2.6
363,324 - +1.3
363,348 - +3.1
363,401 + -1.7
363,401 + -0.1
363,401 + +0.9
363,401 + -3.4
363,402 - +1.1
363,452 + +0.3
363,453 - -1.9
363,453 - -0.1
363,453 - +2.5
363,453 - -1.2
363,453 - +2.6
363,453 - +0.3
363,453 - +1.1
363,544 - -2.3
363,606 + +0.1
363,606 + -0.3
363,607 - -0.7
363,658 + -2.3
363,658 + +1.2
363,658 + +1.9
363,658 + -0.2
363,659 - -0.4
363,659 - +1.1
363,659 - -0.1
363,659 - +2.0
363,659 - +1.0
363,839 - -1.4
363,869 - -0.1
363,869 - -0.4
363,876 + -0.2
363,877 - +1.0
363,952 + Psyr_0341 0.30 +2.9
363,952 + Psyr_0341 0.30 -2.3
363,952 + Psyr_0341 0.30 +2.9
363,952 + Psyr_0341 0.30 +0.2
363,953 - Psyr_0341 0.30 +3.4
363,953 - Psyr_0341 0.30 -1.3
363,953 - Psyr_0341 0.30 +1.1
363,953 - Psyr_0341 0.30 +0.3
363,953 - Psyr_0341 0.30 +0.5
363,979 - Psyr_0341 0.41 +1.3
364,113 + -2.5
364,113 + -0.6
364,122 + +1.8
364,122 + -1.1
364,122 + -0.1
364,122 + +0.9

Or see this region's nucleotide sequence