Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0314 and Psyr_0315 are separated by 6 nucleotides Psyr_0315 and Psyr_0316 are separated by 193 nucleotides Psyr_0316 and Psyr_0317 are separated by 45 nucleotides Psyr_0317 and Psyr_0318 are separated by 303 nucleotides Psyr_0318 and Psyr_0319 overlap by 4 nucleotides Psyr_0319 and Psyr_0320 are separated by 150 nucleotides
Psyr_0314: Psyr_0314 - Flagellar basal body-associated protein FliL, at 334,005 to 334,412
_0314
Psyr_0315: Psyr_0315 - Protein of unknown function DUF589, at 334,419 to 334,868
_0315
Psyr_0316: Psyr_0316 - conserved hypothetical protein, at 335,062 to 335,214
_0316
Psyr_0317: Psyr_0317 - 5-formyltetrahydrofolate cyclo-ligase, at 335,260 to 335,871
_0317
Psyr_0318: Psyr_0318 - cell division protein ZapA, at 336,175 to 336,504
_0318
Psyr_0319: Psyr_0319 - conserved hypothetical protein, at 336,501 to 336,710
_0319
Psyr_0320: Psyr_0320 - Protein of unknown function UPF0149, at 336,861 to 337,430
_0320
Position (kb) 335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 334.394 kb on + strand at 334.395 kb on - strand at 334.531 kb on + strand, within Psyr_0315 at 334.661 kb on - strand, within Psyr_0315 at 334.720 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.774 kb on + strand, within Psyr_0315 at 334.775 kb on - strand, within Psyr_0315 at 334.896 kb on - strand at 334.945 kb on + strand at 334.945 kb on + strand at 334.945 kb on + strand at 334.945 kb on + strand at 334.946 kb on - strand at 335.011 kb on + strand at 335.035 kb on + strand at 335.035 kb on + strand at 335.035 kb on + strand at 335.081 kb on + strand, within Psyr_0316 at 335.226 kb on - strand at 335.226 kb on - strand at 335.279 kb on + strand at 335.279 kb on + strand at 335.279 kb on + strand at 335.279 kb on + strand at 335.279 kb on + strand at 335.279 kb on + strand at 335.279 kb on + strand at 335.279 kb on + strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.280 kb on - strand at 335.314 kb on + strand at 335.314 kb on + strand at 335.315 kb on - strand at 335.315 kb on - strand at 335.315 kb on - strand at 335.374 kb on + strand, within Psyr_0317 at 335.411 kb on + strand, within Psyr_0317 at 335.430 kb on - strand, within Psyr_0317 at 335.430 kb on - strand, within Psyr_0317 at 335.476 kb on + strand, within Psyr_0317 at 335.476 kb on + strand, within Psyr_0317 at 335.639 kb on + strand, within Psyr_0317 at 335.639 kb on + strand, within Psyr_0317 at 335.639 kb on + strand, within Psyr_0317 at 335.639 kb on + strand, within Psyr_0317 at 335.639 kb on + strand, within Psyr_0317 at 335.639 kb on + strand, within Psyr_0317 at 335.639 kb on + strand, within Psyr_0317 at 335.640 kb on - strand, within Psyr_0317 at 335.640 kb on - strand, within Psyr_0317 at 335.640 kb on - strand, within Psyr_0317 at 335.640 kb on - strand, within Psyr_0317 at 335.640 kb on - strand, within Psyr_0317 at 335.765 kb on + strand, within Psyr_0317 at 335.766 kb on - strand, within Psyr_0317 at 335.766 kb on - strand, within Psyr_0317 at 335.770 kb on - strand, within Psyr_0317 at 335.824 kb on + strand at 335.825 kb on - strand at 335.825 kb on - strand at 335.825 kb on - strand at 335.993 kb on + strand at 336.039 kb on - strand at 336.154 kb on + strand at 336.154 kb on + strand at 336.154 kb on + strand at 336.154 kb on + strand at 336.155 kb on - strand at 336.155 kb on - strand at 336.280 kb on + strand, within Psyr_0318 at 336.280 kb on + strand, within Psyr_0318 at 336.280 kb on + strand, within Psyr_0318 at 336.280 kb on + strand, within Psyr_0318 at 336.280 kb on + strand, within Psyr_0318 at 336.280 kb on + strand, within Psyr_0318 at 336.281 kb on - strand, within Psyr_0318 at 336.281 kb on - strand, within Psyr_0318 at 336.281 kb on - strand, within Psyr_0318 at 336.281 kb on - strand, within Psyr_0318 at 336.281 kb on - strand, within Psyr_0318 at 336.281 kb on - strand, within Psyr_0318 at 336.458 kb on + strand, within Psyr_0318 at 336.458 kb on + strand, within Psyr_0318 at 336.458 kb on + strand, within Psyr_0318 at 336.459 kb on - strand, within Psyr_0318 at 336.618 kb on + strand, within Psyr_0319 at 336.618 kb on + strand, within Psyr_0319 at 336.618 kb on + strand, within Psyr_0319 at 336.618 kb on + strand, within Psyr_0319 at 336.619 kb on - strand, within Psyr_0319 at 336.619 kb on - strand, within Psyr_0319 at 336.619 kb on - strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.621 kb on + strand, within Psyr_0319 at 336.622 kb on - strand, within Psyr_0319 at 336.641 kb on + strand, within Psyr_0319 at 336.655 kb on + strand, within Psyr_0319 at 336.655 kb on + strand, within Psyr_0319 at 336.655 kb on + strand, within Psyr_0319 at 336.656 kb on - strand, within Psyr_0319 at 336.656 kb on - strand, within Psyr_0319 at 336.656 kb on - strand, within Psyr_0319 at 336.656 kb on - strand, within Psyr_0319 at 336.725 kb on + strand at 336.725 kb on + strand at 336.725 kb on + strand at 336.725 kb on + strand at 336.808 kb on + strand at 336.813 kb on + strand at 336.813 kb on + strand at 336.813 kb on + strand at 336.813 kb on + strand at 336.829 kb on + strand at 336.829 kb on + strand at 336.829 kb on + strand at 336.853 kb on - strand at 336.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 334,394 + -1.1 334,395 - +2.0 334,531 + Psyr_0315 0.25 +0.2 334,661 - Psyr_0315 0.54 -3.4 334,720 + Psyr_0315 0.67 +1.7 334,774 + Psyr_0315 0.79 -0.4 334,774 + Psyr_0315 0.79 +0.9 334,774 + Psyr_0315 0.79 -2.9 334,774 + Psyr_0315 0.79 -2.4 334,775 - Psyr_0315 0.79 -1.9 334,896 - -0.6 334,945 + +0.9 334,945 + +1.6 334,945 + -2.9 334,945 + +2.8 334,946 - +2.3 335,011 + -0.4 335,035 + -1.6 335,035 + -2.0 335,035 + -1.2 335,081 + Psyr_0316 0.12 -0.1 335,226 - +3.6 335,226 - -1.0 335,279 + -1.7 335,279 + -2.6 335,279 + +1.9 335,279 + -2.7 335,279 + +2.4 335,279 + -1.8 335,279 + +1.3 335,279 + -0.7 335,280 - -1.9 335,280 - +0.9 335,280 - -2.6 335,280 - +1.4 335,280 - +2.4 335,280 - +0.3 335,280 - +1.0 335,280 - +0.2 335,280 - -2.7 335,314 + +0.4 335,314 + -1.8 335,315 - +1.4 335,315 - -1.4 335,315 - -0.3 335,374 + Psyr_0317 0.19 -2.8 335,411 + Psyr_0317 0.25 -0.4 335,430 - Psyr_0317 0.28 +0.6 335,430 - Psyr_0317 0.28 -2.3 335,476 + Psyr_0317 0.35 -0.5 335,476 + Psyr_0317 0.35 -2.3 335,639 + Psyr_0317 0.62 -2.7 335,639 + Psyr_0317 0.62 +0.3 335,639 + Psyr_0317 0.62 -0.1 335,639 + Psyr_0317 0.62 -1.1 335,639 + Psyr_0317 0.62 -0.7 335,639 + Psyr_0317 0.62 +0.9 335,639 + Psyr_0317 0.62 -1.7 335,640 - Psyr_0317 0.62 -1.4 335,640 - Psyr_0317 0.62 -1.7 335,640 - Psyr_0317 0.62 -2.3 335,640 - Psyr_0317 0.62 -0.7 335,640 - Psyr_0317 0.62 -1.9 335,765 + Psyr_0317 0.83 -2.0 335,766 - Psyr_0317 0.83 -1.4 335,766 - Psyr_0317 0.83 -1.7 335,770 - Psyr_0317 0.83 -0.1 335,824 + +1.6 335,825 - +0.0 335,825 - -2.9 335,825 - +1.9 335,993 + -1.9 336,039 - +3.8 336,154 + -1.1 336,154 + -1.4 336,154 + +3.5 336,154 + +0.2 336,155 - -0.1 336,155 - -0.9 336,280 + Psyr_0318 0.32 -1.1 336,280 + Psyr_0318 0.32 +1.5 336,280 + Psyr_0318 0.32 -0.1 336,280 + Psyr_0318 0.32 +1.9 336,280 + Psyr_0318 0.32 -2.6 336,280 + Psyr_0318 0.32 -0.1 336,281 - Psyr_0318 0.32 -1.2 336,281 - Psyr_0318 0.32 +1.2 336,281 - Psyr_0318 0.32 -1.4 336,281 - Psyr_0318 0.32 -2.1 336,281 - Psyr_0318 0.32 +0.4 336,281 - Psyr_0318 0.32 -1.1 336,458 + Psyr_0318 0.86 -1.7 336,458 + Psyr_0318 0.86 -1.1 336,458 + Psyr_0318 0.86 +3.8 336,459 - Psyr_0318 0.86 -0.2 336,618 + Psyr_0319 0.56 +1.6 336,618 + Psyr_0319 0.56 +1.1 336,618 + Psyr_0319 0.56 -1.6 336,618 + Psyr_0319 0.56 -2.3 336,619 - Psyr_0319 0.56 -1.1 336,619 - Psyr_0319 0.56 +0.9 336,619 - Psyr_0319 0.56 -2.4 336,621 + Psyr_0319 0.57 -1.7 336,621 + Psyr_0319 0.57 -0.7 336,621 + Psyr_0319 0.57 +0.9 336,621 + Psyr_0319 0.57 +1.5 336,621 + Psyr_0319 0.57 -2.1 336,621 + Psyr_0319 0.57 -1.7 336,621 + Psyr_0319 0.57 -0.7 336,621 + Psyr_0319 0.57 -1.6 336,621 + Psyr_0319 0.57 -0.1 336,621 + Psyr_0319 0.57 -0.7 336,621 + Psyr_0319 0.57 +2.5 336,622 - Psyr_0319 0.58 -0.7 336,641 + Psyr_0319 0.67 +3.1 336,655 + Psyr_0319 0.73 +2.5 336,655 + Psyr_0319 0.73 +0.9 336,655 + Psyr_0319 0.73 -0.0 336,656 - Psyr_0319 0.74 +4.1 336,656 - Psyr_0319 0.74 -0.4 336,656 - Psyr_0319 0.74 -1.7 336,656 - Psyr_0319 0.74 -1.4 336,725 + -1.7 336,725 + -0.1 336,725 + -1.9 336,725 + +0.4 336,808 + -0.4 336,813 + -1.8 336,813 + -1.4 336,813 + -1.1 336,813 + -1.7 336,829 + +2.5 336,829 + -2.9 336,829 + -2.1 336,853 - -1.4 336,856 + -0.1
Or see this region's nucleotide sequence