Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0052 and Psyr_0053 are separated by 46 nucleotides Psyr_0053 and Psyr_0054 overlap by 4 nucleotides Psyr_0054 and Psyr_0055 are separated by 216 nucleotides Psyr_0055 and Psyr_0056 are separated by 77 nucleotides
Psyr_0052: Psyr_0052 - ABC transporter, at 52,475 to 54,385
_0052
Psyr_0053: Psyr_0053 - conserved hypothetical protein, at 54,432 to 54,908
_0053
Psyr_0054: Psyr_0054 - alginate regulatory protein AlgR3, at 54,905 to 55,921
_0054
Psyr_0055: Psyr_0055 - FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type, at 56,138 to 56,815
_0055
Psyr_0056: Psyr_0056 - Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ, at 56,893 to 57,393
_0056
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 54.018 kb on + strand, within Psyr_0052 at 54.018 kb on + strand, within Psyr_0052 at 54.104 kb on + strand, within Psyr_0052 at 54.138 kb on + strand, within Psyr_0052 at 54.139 kb on - strand, within Psyr_0052 at 54.139 kb on - strand, within Psyr_0052 at 54.190 kb on + strand, within Psyr_0052 at 54.269 kb on - strand at 54.301 kb on + strand at 54.302 kb on - strand at 54.335 kb on + strand at 54.335 kb on + strand at 54.359 kb on + strand at 54.360 kb on - strand at 54.364 kb on + strand at 54.365 kb on - strand at 54.365 kb on - strand at 54.385 kb on + strand at 54.385 kb on + strand at 54.385 kb on + strand at 54.385 kb on + strand at 54.431 kb on + strand at 54.432 kb on - strand at 54.432 kb on - strand at 54.432 kb on - strand at 54.468 kb on + strand at 54.598 kb on + strand, within Psyr_0053 at 54.598 kb on + strand, within Psyr_0053 at 54.598 kb on + strand, within Psyr_0053 at 54.598 kb on + strand, within Psyr_0053 at 54.598 kb on + strand, within Psyr_0053 at 54.599 kb on - strand, within Psyr_0053 at 54.906 kb on + strand at 54.906 kb on + strand at 54.906 kb on + strand at 54.907 kb on - strand at 54.907 kb on - strand at 54.907 kb on - strand at 55.240 kb on + strand, within Psyr_0054 at 55.241 kb on - strand, within Psyr_0054 at 55.438 kb on + strand, within Psyr_0054 at 55.529 kb on - strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.894 kb on + strand at 55.894 kb on + strand at 55.894 kb on + strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.899 kb on - strand at 55.899 kb on - strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.959 kb on - strand at 55.959 kb on - strand at 56.019 kb on - strand at 56.137 kb on - strand at 56.137 kb on - strand at 56.148 kb on - strand at 56.304 kb on + strand, within Psyr_0055 at 56.305 kb on - strand, within Psyr_0055 at 56.579 kb on + strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.733 kb on - strand, within Psyr_0055 at 56.771 kb on - strand at 56.782 kb on - strand at 56.782 kb on - strand at 56.813 kb on + strand at 56.813 kb on + strand at 56.813 kb on + strand at 56.814 kb on - strand at 56.814 kb on - strand at 56.814 kb on - strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.874 kb on - strand at 56.874 kb on - strand at 56.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 54,018 + Psyr_0052 0.81 -1.0 54,018 + Psyr_0052 0.81 -0.1 54,104 + Psyr_0052 0.85 -2.5 54,138 + Psyr_0052 0.87 -2.2 54,139 - Psyr_0052 0.87 +1.7 54,139 - Psyr_0052 0.87 +1.4 54,190 + Psyr_0052 0.90 -0.2 54,269 - -0.8 54,301 + +2.3 54,302 - +0.2 54,335 + +1.6 54,335 + +0.4 54,359 + +2.5 54,360 - -0.8 54,364 + -2.4 54,365 - -0.0 54,365 - -1.6 54,385 + -0.5 54,385 + -3.1 54,385 + -1.9 54,385 + -0.2 54,431 + +1.8 54,432 - +0.8 54,432 - -1.6 54,432 - -0.2 54,468 + +0.8 54,598 + Psyr_0053 0.35 +0.3 54,598 + Psyr_0053 0.35 -0.4 54,598 + Psyr_0053 0.35 -3.4 54,598 + Psyr_0053 0.35 -0.6 54,598 + Psyr_0053 0.35 -0.8 54,599 - Psyr_0053 0.35 +4.1 54,906 + +1.5 54,906 + -0.0 54,906 + +2.0 54,907 - -1.2 54,907 - -1.6 54,907 - -0.4 55,240 + Psyr_0054 0.33 -2.9 55,241 - Psyr_0054 0.33 +0.2 55,438 + Psyr_0054 0.52 -0.2 55,529 - Psyr_0054 0.61 +1.4 55,620 + Psyr_0054 0.70 +3.8 55,620 + Psyr_0054 0.70 -1.5 55,620 + Psyr_0054 0.70 +6.0 55,620 + Psyr_0054 0.70 +2.1 55,620 + Psyr_0054 0.70 -2.9 55,620 + Psyr_0054 0.70 -0.2 55,620 + Psyr_0054 0.70 +0.9 55,620 + Psyr_0054 0.70 -0.2 55,620 + Psyr_0054 0.70 -0.5 55,620 + Psyr_0054 0.70 -1.5 55,620 + Psyr_0054 0.70 +2.9 55,620 + Psyr_0054 0.70 +2.1 55,620 + Psyr_0054 0.70 +3.2 55,621 - Psyr_0054 0.70 +0.3 55,621 - Psyr_0054 0.70 +0.0 55,621 - Psyr_0054 0.70 +0.0 55,621 - Psyr_0054 0.70 +0.8 55,621 - Psyr_0054 0.70 +1.9 55,621 - Psyr_0054 0.70 -3.0 55,621 - Psyr_0054 0.70 +0.5 55,621 - Psyr_0054 0.70 +1.6 55,621 - Psyr_0054 0.70 -1.3 55,621 - Psyr_0054 0.70 +1.3 55,621 - Psyr_0054 0.70 +5.7 55,621 - Psyr_0054 0.70 -0.8 55,621 - Psyr_0054 0.70 -1.8 55,621 - Psyr_0054 0.70 -0.8 55,894 + -1.9 55,894 + +4.2 55,894 + -1.2 55,895 - -0.8 55,895 - -2.0 55,895 - -1.4 55,895 - -0.9 55,899 - +1.6 55,899 - -2.6 55,926 + +0.2 55,926 + +1.3 55,926 + +0.3 55,926 + -0.3 55,926 + -0.9 55,927 - -1.2 55,927 - -2.0 55,927 - -2.5 55,927 - -1.2 55,955 + -3.2 55,955 + +2.1 55,955 + -0.8 55,955 + +1.0 55,955 + -1.8 55,955 + +2.1 55,955 + +1.5 55,955 + +0.2 55,955 + +0.4 55,956 - -1.8 55,956 - +1.3 55,956 - -2.4 55,956 - -0.7 55,956 - +1.9 55,956 - -0.5 55,958 + -1.1 55,958 + -1.2 55,958 + +0.7 55,958 + +3.4 55,958 + +1.0 55,959 - -2.9 55,959 - -0.8 56,019 - +0.1 56,137 - +1.4 56,137 - +2.2 56,148 - -0.8 56,304 + Psyr_0055 0.24 +3.8 56,305 - Psyr_0055 0.25 +0.8 56,579 + Psyr_0055 0.65 +0.2 56,580 - Psyr_0055 0.65 -0.3 56,580 - Psyr_0055 0.65 +2.5 56,580 - Psyr_0055 0.65 +0.9 56,732 + Psyr_0055 0.88 -0.8 56,732 + Psyr_0055 0.88 -2.0 56,732 + Psyr_0055 0.88 +1.9 56,733 - Psyr_0055 0.88 -2.4 56,771 - +0.8 56,782 - -0.2 56,782 - -0.2 56,813 + +2.8 56,813 + -2.2 56,813 + -1.8 56,814 - +0.8 56,814 - -0.2 56,814 - -0.8 56,856 + -3.1 56,856 + -0.5 56,856 + -0.5 56,856 + +0.8 56,857 - +4.1 56,857 - -1.0 56,857 - -1.5 56,857 - +1.3 56,873 + +2.7 56,873 + -1.6 56,873 + -0.8 56,873 + +1.6 56,874 - -0.2 56,874 - -1.4 56,874 - -0.8
Or see this region's nucleotide sequence