Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0035 and Psyr_0036 are separated by 0 nucleotides Psyr_0036 and Psyr_0037 are separated by 165 nucleotides Psyr_0037 and Psyr_0038 are separated by 150 nucleotides Psyr_0038 and Psyr_0039 are separated by 137 nucleotides
Psyr_0035: Psyr_0035 - regulatory protein, LysR:LysR, substrate-binding protein, at 39,307 to 40,263
_0035
Psyr_0036: Psyr_0036 - protein of unknown function DUF883, at 40,264 to 40,590
_0036
Psyr_0037: Psyr_0037 - Protein of unknown function DUF1458, at 40,756 to 40,971
_0037
Psyr_0038: Psyr_0038 - Protein of unknown function DUF1161, at 41,122 to 41,346
_0038
Psyr_0039: Psyr_0039 - luciferase, at 41,484 to 42,485
_0039
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 39.270 kb on - strand at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.602 kb on + strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.603 kb on - strand, within Psyr_0035 at 39.792 kb on - strand, within Psyr_0035 at 39.792 kb on - strand, within Psyr_0035 at 39.792 kb on - strand, within Psyr_0035 at 40.033 kb on + strand, within Psyr_0035 at 40.033 kb on + strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.034 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.037 kb on - strand, within Psyr_0035 at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.289 kb on + strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.290 kb on - strand at 40.355 kb on + strand, within Psyr_0036 at 40.356 kb on - strand, within Psyr_0036 at 40.356 kb on - strand, within Psyr_0036 at 40.406 kb on + strand, within Psyr_0036 at 40.406 kb on + strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.407 kb on - strand, within Psyr_0036 at 40.552 kb on - strand, within Psyr_0036 at 40.552 kb on - strand, within Psyr_0036 at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.581 kb on + strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.582 kb on - strand at 40.584 kb on + strand at 40.584 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.720 kb on + strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.721 kb on - strand at 40.722 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.774 kb on + strand at 40.775 kb on - strand at 40.775 kb on - strand at 40.775 kb on - strand at 40.934 kb on + strand, within Psyr_0037 at 40.934 kb on + strand, within Psyr_0037 at 40.935 kb on - strand, within Psyr_0037 at 40.969 kb on + strand at 40.969 kb on + strand at 40.970 kb on - strand at 40.970 kb on - strand at 41.006 kb on + strand at 41.016 kb on + strand at 41.017 kb on - strand at 41.017 kb on - strand at 41.030 kb on + strand at 41.030 kb on + strand at 41.144 kb on + strand at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.248 kb on + strand, within Psyr_0038 at 41.249 kb on - strand, within Psyr_0038 at 41.249 kb on - strand, within Psyr_0038 at 41.515 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 39,270 - -0.2 39,602 + Psyr_0035 0.31 -1.8 39,602 + Psyr_0035 0.31 -1.4 39,602 + Psyr_0035 0.31 -0.8 39,602 + Psyr_0035 0.31 -3.0 39,602 + Psyr_0035 0.31 +0.7 39,602 + Psyr_0035 0.31 -1.8 39,602 + Psyr_0035 0.31 -1.3 39,602 + Psyr_0035 0.31 +0.3 39,602 + Psyr_0035 0.31 +0.8 39,602 + Psyr_0035 0.31 -0.5 39,602 + Psyr_0035 0.31 -1.8 39,602 + Psyr_0035 0.31 +2.7 39,602 + Psyr_0035 0.31 +0.6 39,602 + Psyr_0035 0.31 -0.4 39,602 + Psyr_0035 0.31 -0.8 39,602 + Psyr_0035 0.31 +0.2 39,602 + Psyr_0035 0.31 -0.2 39,602 + Psyr_0035 0.31 -2.4 39,602 + Psyr_0035 0.31 +0.5 39,602 + Psyr_0035 0.31 -1.3 39,602 + Psyr_0035 0.31 +1.5 39,602 + Psyr_0035 0.31 +0.9 39,603 - Psyr_0035 0.31 -1.4 39,603 - Psyr_0035 0.31 +2.9 39,603 - Psyr_0035 0.31 -2.9 39,603 - Psyr_0035 0.31 +0.8 39,603 - Psyr_0035 0.31 +3.5 39,603 - Psyr_0035 0.31 +2.9 39,603 - Psyr_0035 0.31 -0.6 39,603 - Psyr_0035 0.31 +0.2 39,603 - Psyr_0035 0.31 +0.4 39,603 - Psyr_0035 0.31 -1.5 39,792 - Psyr_0035 0.51 +2.5 39,792 - Psyr_0035 0.51 -1.8 39,792 - Psyr_0035 0.51 -2.2 40,033 + Psyr_0035 0.76 +1.7 40,033 + Psyr_0035 0.76 -0.8 40,034 - Psyr_0035 0.76 -2.2 40,034 - Psyr_0035 0.76 -1.2 40,034 - Psyr_0035 0.76 -1.2 40,034 - Psyr_0035 0.76 -2.9 40,037 - Psyr_0035 0.76 +1.3 40,037 - Psyr_0035 0.76 -1.6 40,037 - Psyr_0035 0.76 +1.3 40,037 - Psyr_0035 0.76 +0.8 40,037 - Psyr_0035 0.76 +3.7 40,289 + +1.1 40,289 + +0.2 40,289 + -0.9 40,289 + +1.4 40,289 + -1.2 40,289 + -0.4 40,289 + +0.9 40,289 + -1.2 40,289 + -3.4 40,289 + +1.6 40,290 - -1.1 40,290 - +0.5 40,290 - +1.2 40,290 - +1.2 40,290 - -0.2 40,290 - +1.9 40,290 - -2.0 40,290 - +0.4 40,355 + Psyr_0036 0.28 -2.4 40,356 - Psyr_0036 0.28 +2.3 40,356 - Psyr_0036 0.28 +0.4 40,406 + Psyr_0036 0.43 -0.2 40,406 + Psyr_0036 0.43 +0.8 40,407 - Psyr_0036 0.44 +1.1 40,407 - Psyr_0036 0.44 +3.8 40,407 - Psyr_0036 0.44 -1.5 40,407 - Psyr_0036 0.44 -1.5 40,407 - Psyr_0036 0.44 +2.9 40,552 - Psyr_0036 0.88 +1.8 40,552 - Psyr_0036 0.88 -0.4 40,581 + +1.5 40,581 + +0.9 40,581 + -0.4 40,581 + +0.4 40,581 + +0.1 40,581 + +1.7 40,581 + +1.7 40,581 + -0.8 40,582 - -2.6 40,582 - -0.2 40,582 - +2.0 40,582 - +1.1 40,582 - +3.9 40,582 - -1.8 40,582 - +1.0 40,582 - +1.9 40,582 - +1.0 40,584 + +1.1 40,584 + +5.0 40,720 + -2.5 40,720 + -0.5 40,720 + +2.1 40,720 + -2.0 40,721 - +0.4 40,721 - -2.2 40,721 - -0.8 40,721 - +0.0 40,722 + +0.3 40,774 + -3.7 40,774 + -0.8 40,774 + +1.0 40,774 + +0.4 40,774 + -0.8 40,774 + -1.4 40,774 + -2.8 40,775 - -0.1 40,775 - -1.5 40,775 - +0.4 40,934 + Psyr_0037 0.82 -0.7 40,934 + Psyr_0037 0.82 -3.6 40,935 - Psyr_0037 0.83 +0.2 40,969 + -3.0 40,969 + +0.8 40,970 - +0.3 40,970 - -1.4 41,006 + -1.5 41,016 + +1.3 41,017 - -1.8 41,017 - -2.8 41,030 + -0.6 41,030 + -2.4 41,144 + +3.2 41,248 + Psyr_0038 0.56 -1.9 41,248 + Psyr_0038 0.56 +0.8 41,248 + Psyr_0038 0.56 +2.1 41,248 + Psyr_0038 0.56 +2.6 41,248 + Psyr_0038 0.56 -2.4 41,248 + Psyr_0038 0.56 +0.7 41,249 - Psyr_0038 0.56 -1.5 41,249 - Psyr_0038 0.56 -0.2 41,515 + -0.7 41,542 + -0.2 41,542 + -0.2 41,542 + -2.6 41,542 + -3.0 41,542 + -0.2 41,542 + -0.4 41,542 + +2.4 41,542 + -0.5 41,542 + +1.0 41,543 - -2.3 41,543 - -1.5 41,543 - +0.8 41,543 - +1.5 41,543 - +1.0 41,543 - +1.7 41,543 - -2.0 41,543 - -2.8 41,543 - +1.1 41,543 - -0.5 41,543 - +1.2 41,543 - -2.8 41,543 - +1.2 41,543 - -1.8 41,543 - -2.1 41,555 + -3.4
Or see this region's nucleotide sequence