Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0028 and Psyr_0029 are separated by 36 nucleotides Psyr_0029 and Psyr_0030 are separated by 113 nucleotides
Psyr_0028: Psyr_0028 - Substrate-binding region of ABC-type glycine betaine transport system, at 31,768 to 32,694
_0028
Psyr_0029: Psyr_0029 - Sulfatase, at 32,731 to 34,236
_0029
Psyr_0030: Psyr_0030 - transcriptional regulator, LysR family, at 34,350 to 35,300
_0030
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 31.752 kb on + strand at 31.752 kb on + strand at 31.752 kb on + strand at 31.752 kb on + strand at 31.752 kb on + strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.753 kb on - strand at 31.756 kb on + strand at 31.757 kb on - strand at 31.769 kb on + strand at 31.770 kb on - strand at 31.992 kb on - strand, within Psyr_0028 at 31.992 kb on - strand, within Psyr_0028 at 32.011 kb on - strand, within Psyr_0028 at 32.011 kb on - strand, within Psyr_0028 at 32.036 kb on + strand, within Psyr_0028 at 32.037 kb on - strand, within Psyr_0028 at 32.037 kb on - strand, within Psyr_0028 at 32.037 kb on - strand, within Psyr_0028 at 32.057 kb on + strand, within Psyr_0028 at 32.057 kb on + strand, within Psyr_0028 at 32.057 kb on + strand, within Psyr_0028 at 32.058 kb on - strand, within Psyr_0028 at 32.058 kb on - strand, within Psyr_0028 at 32.058 kb on - strand, within Psyr_0028 at 32.264 kb on + strand, within Psyr_0028 at 32.264 kb on + strand, within Psyr_0028 at 32.264 kb on + strand, within Psyr_0028 at 32.265 kb on - strand, within Psyr_0028 at 32.265 kb on - strand, within Psyr_0028 at 32.265 kb on - strand, within Psyr_0028 at 32.337 kb on - strand, within Psyr_0028 at 32.337 kb on - strand, within Psyr_0028 at 32.420 kb on + strand, within Psyr_0028 at 32.420 kb on + strand, within Psyr_0028 at 32.421 kb on - strand, within Psyr_0028 at 32.421 kb on - strand, within Psyr_0028 at 32.489 kb on + strand, within Psyr_0028 at 32.490 kb on - strand, within Psyr_0028 at 32.683 kb on + strand at 32.700 kb on + strand at 32.700 kb on + strand at 32.700 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.792 kb on + strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.793 kb on - strand at 32.794 kb on - strand at 32.905 kb on + strand, within Psyr_0029 at 33.047 kb on + strand, within Psyr_0029 at 33.047 kb on + strand, within Psyr_0029 at 33.047 kb on + strand, within Psyr_0029 at 33.048 kb on - strand, within Psyr_0029 at 33.048 kb on - strand, within Psyr_0029 at 33.050 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.110 kb on + strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.111 kb on - strand, within Psyr_0029 at 33.287 kb on + strand, within Psyr_0029 at 33.288 kb on - strand, within Psyr_0029 at 33.288 kb on - strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.455 kb on + strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.456 kb on - strand, within Psyr_0029 at 33.473 kb on + strand, within Psyr_0029 at 33.473 kb on + strand, within Psyr_0029 at 33.474 kb on - strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.530 kb on + strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.531 kb on - strand, within Psyr_0029 at 33.598 kb on + strand, within Psyr_0029 at 33.598 kb on + strand, within Psyr_0029 at 33.599 kb on - strand, within Psyr_0029 at 33.599 kb on - strand, within Psyr_0029 at 33.614 kb on + strand, within Psyr_0029 at 33.644 kb on + strand, within Psyr_0029 at 33.644 kb on + strand, within Psyr_0029 at 33.645 kb on - strand, within Psyr_0029 at 33.716 kb on + strand, within Psyr_0029 at 33.716 kb on + strand, within Psyr_0029 at 33.717 kb on - strand, within Psyr_0029 at 33.722 kb on + strand, within Psyr_0029 at 33.722 kb on + strand, within Psyr_0029 at 33.722 kb on + strand, within Psyr_0029 at 33.723 kb on - strand, within Psyr_0029 at 33.723 kb on - strand, within Psyr_0029 at 33.816 kb on - strand, within Psyr_0029 at 33.864 kb on - strand, within Psyr_0029 at 33.960 kb on - strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.986 kb on + strand, within Psyr_0029 at 33.987 kb on - strand, within Psyr_0029 at 34.117 kb on + strand at 34.117 kb on + strand at 34.118 kb on - strand at 34.118 kb on - strand at 34.238 kb on + strand at 34.238 kb on + strand at 34.238 kb on + strand at 34.239 kb on - strand at 34.239 kb on - strand at 34.239 kb on - strand at 34.245 kb on + strand at 34.246 kb on - strand at 34.246 kb on - strand at 34.298 kb on + strand at 34.319 kb on + strand at 34.320 kb on - strand at 34.334 kb on - strand at 34.414 kb on + strand at 34.524 kb on + strand, within Psyr_0030 at 34.524 kb on + strand, within Psyr_0030 at 34.525 kb on - strand, within Psyr_0030 at 34.532 kb on + strand, within Psyr_0030 at 34.609 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.978 kb on + strand, within Psyr_0030 at 34.979 kb on - strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.037 kb on + strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.038 kb on - strand, within Psyr_0030 at 35.169 kb on + strand, within Psyr_0030 at 35.169 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.172 kb on + strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030 at 35.173 kb on - strand, within Psyr_0030
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 31,752 + +2.4 31,752 + -0.6 31,752 + -1.1 31,752 + -1.5 31,752 + +6.7 31,753 - +2.6 31,753 - -0.9 31,753 - -0.6 31,753 - -0.8 31,753 - +3.1 31,753 - -0.2 31,753 - -2.0 31,753 - +2.3 31,753 - -2.0 31,756 + -0.8 31,757 - -1.4 31,769 + -2.4 31,770 - -0.2 31,992 - Psyr_0028 0.24 -1.8 31,992 - Psyr_0028 0.24 +0.8 32,011 - Psyr_0028 0.26 +0.2 32,011 - Psyr_0028 0.26 +0.1 32,036 + Psyr_0028 0.29 -2.4 32,037 - Psyr_0028 0.29 -1.8 32,037 - Psyr_0028 0.29 -0.4 32,037 - Psyr_0028 0.29 +1.1 32,057 + Psyr_0028 0.31 +2.7 32,057 + Psyr_0028 0.31 +1.7 32,057 + Psyr_0028 0.31 +0.8 32,058 - Psyr_0028 0.31 -1.4 32,058 - Psyr_0028 0.31 +2.4 32,058 - Psyr_0028 0.31 -0.5 32,264 + Psyr_0028 0.54 +2.5 32,264 + Psyr_0028 0.54 -3.6 32,264 + Psyr_0028 0.54 -2.5 32,265 - Psyr_0028 0.54 -0.5 32,265 - Psyr_0028 0.54 -2.0 32,265 - Psyr_0028 0.54 +0.7 32,337 - Psyr_0028 0.61 -1.5 32,337 - Psyr_0028 0.61 -1.8 32,420 + Psyr_0028 0.70 +2.2 32,420 + Psyr_0028 0.70 +0.8 32,421 - Psyr_0028 0.70 +1.8 32,421 - Psyr_0028 0.70 +2.1 32,489 + Psyr_0028 0.78 +3.2 32,490 - Psyr_0028 0.78 -0.6 32,683 + +0.8 32,700 + +2.3 32,700 + -1.5 32,700 + +2.6 32,792 + +1.5 32,792 + +1.5 32,792 + -0.8 32,792 + -0.2 32,792 + -0.4 32,792 + +0.9 32,792 + +3.1 32,792 + +1.0 32,792 + +0.7 32,792 + -1.8 32,792 + +0.8 32,792 + +1.2 32,792 + +1.5 32,793 - -1.0 32,793 - -1.2 32,793 - -1.2 32,793 - +0.1 32,793 - +0.8 32,793 - +1.1 32,793 - +0.5 32,793 - -1.5 32,793 - +0.4 32,793 - +2.4 32,793 - -2.9 32,793 - -0.8 32,794 - -0.5 32,905 + Psyr_0029 0.12 +0.7 33,047 + Psyr_0029 0.21 +0.5 33,047 + Psyr_0029 0.21 +3.4 33,047 + Psyr_0029 0.21 +1.4 33,048 - Psyr_0029 0.21 -0.2 33,048 - Psyr_0029 0.21 -2.2 33,050 + Psyr_0029 0.21 -2.6 33,110 + Psyr_0029 0.25 -1.2 33,110 + Psyr_0029 0.25 +2.7 33,110 + Psyr_0029 0.25 -1.5 33,110 + Psyr_0029 0.25 +3.6 33,110 + Psyr_0029 0.25 +2.3 33,110 + Psyr_0029 0.25 -3.4 33,110 + Psyr_0029 0.25 +0.0 33,110 + Psyr_0029 0.25 +1.2 33,110 + Psyr_0029 0.25 -2.0 33,111 - Psyr_0029 0.25 +1.4 33,111 - Psyr_0029 0.25 +1.2 33,111 - Psyr_0029 0.25 +2.6 33,111 - Psyr_0029 0.25 -0.4 33,111 - Psyr_0029 0.25 +0.2 33,111 - Psyr_0029 0.25 -3.3 33,111 - Psyr_0029 0.25 +2.4 33,111 - Psyr_0029 0.25 -1.1 33,111 - Psyr_0029 0.25 +4.5 33,111 - Psyr_0029 0.25 +0.4 33,111 - Psyr_0029 0.25 +0.1 33,287 + Psyr_0029 0.37 +0.3 33,288 - Psyr_0029 0.37 +0.8 33,288 - Psyr_0029 0.37 +0.6 33,455 + Psyr_0029 0.48 -2.6 33,455 + Psyr_0029 0.48 -0.6 33,455 + Psyr_0029 0.48 -0.8 33,455 + Psyr_0029 0.48 -1.1 33,455 + Psyr_0029 0.48 -0.8 33,455 + Psyr_0029 0.48 +1.7 33,456 - Psyr_0029 0.48 -2.8 33,456 - Psyr_0029 0.48 -3.4 33,456 - Psyr_0029 0.48 +0.7 33,456 - Psyr_0029 0.48 -0.3 33,456 - Psyr_0029 0.48 -0.5 33,456 - Psyr_0029 0.48 -0.7 33,456 - Psyr_0029 0.48 +2.1 33,456 - Psyr_0029 0.48 +0.8 33,456 - Psyr_0029 0.48 +3.2 33,473 + Psyr_0029 0.49 -1.5 33,473 + Psyr_0029 0.49 -0.8 33,474 - Psyr_0029 0.49 +1.5 33,530 + Psyr_0029 0.53 -0.6 33,530 + Psyr_0029 0.53 -0.8 33,530 + Psyr_0029 0.53 -3.1 33,530 + Psyr_0029 0.53 -1.8 33,531 - Psyr_0029 0.53 +0.1 33,531 - Psyr_0029 0.53 -2.6 33,531 - Psyr_0029 0.53 +0.3 33,531 - Psyr_0029 0.53 +0.8 33,598 + Psyr_0029 0.58 -1.1 33,598 + Psyr_0029 0.58 -2.2 33,599 - Psyr_0029 0.58 +0.2 33,599 - Psyr_0029 0.58 +0.0 33,614 + Psyr_0029 0.59 -0.8 33,644 + Psyr_0029 0.61 -2.5 33,644 + Psyr_0029 0.61 -1.8 33,645 - Psyr_0029 0.61 -2.2 33,716 + Psyr_0029 0.65 -0.5 33,716 + Psyr_0029 0.65 -1.1 33,717 - Psyr_0029 0.65 +0.5 33,722 + Psyr_0029 0.66 -1.5 33,722 + Psyr_0029 0.66 -0.8 33,722 + Psyr_0029 0.66 +1.3 33,723 - Psyr_0029 0.66 -0.1 33,723 - Psyr_0029 0.66 +0.3 33,816 - Psyr_0029 0.72 -2.0 33,864 - Psyr_0029 0.75 +1.0 33,960 - Psyr_0029 0.82 -0.6 33,986 + Psyr_0029 0.83 +0.3 33,986 + Psyr_0029 0.83 -0.9 33,986 + Psyr_0029 0.83 -1.1 33,986 + Psyr_0029 0.83 -0.2 33,986 + Psyr_0029 0.83 -2.2 33,987 - Psyr_0029 0.83 -0.1 34,117 + -2.0 34,117 + +0.8 34,118 - -3.6 34,118 - +1.4 34,238 + -3.4 34,238 + +3.6 34,238 + -0.2 34,239 - -1.5 34,239 - -1.8 34,239 - -1.2 34,245 + +0.1 34,246 - +0.2 34,246 - -1.8 34,298 + -1.5 34,319 + +1.5 34,320 - -1.2 34,334 - +0.2 34,414 + -2.5 34,524 + Psyr_0030 0.18 -0.2 34,524 + Psyr_0030 0.18 +1.0 34,525 - Psyr_0030 0.18 +1.3 34,532 + Psyr_0030 0.19 +2.4 34,609 + Psyr_0030 0.27 -1.3 34,978 + Psyr_0030 0.66 +0.4 34,978 + Psyr_0030 0.66 -0.2 34,978 + Psyr_0030 0.66 -2.0 34,978 + Psyr_0030 0.66 +0.1 34,978 + Psyr_0030 0.66 -1.9 34,978 + Psyr_0030 0.66 +2.0 34,978 + Psyr_0030 0.66 +2.0 34,979 - Psyr_0030 0.66 -0.9 35,037 + Psyr_0030 0.72 +0.8 35,037 + Psyr_0030 0.72 -0.2 35,037 + Psyr_0030 0.72 +3.6 35,037 + Psyr_0030 0.72 -1.5 35,037 + Psyr_0030 0.72 -2.5 35,037 + Psyr_0030 0.72 -3.0 35,038 - Psyr_0030 0.72 -0.8 35,038 - Psyr_0030 0.72 +0.2 35,038 - Psyr_0030 0.72 -2.0 35,038 - Psyr_0030 0.72 +0.8 35,038 - Psyr_0030 0.72 -0.8 35,169 + Psyr_0030 0.86 -2.9 35,169 + Psyr_0030 0.86 +1.3 35,172 + Psyr_0030 0.86 -2.5 35,172 + Psyr_0030 0.86 +0.8 35,172 + Psyr_0030 0.86 +0.8 35,172 + Psyr_0030 0.86 +0.0 35,172 + Psyr_0030 0.86 -3.3 35,172 + Psyr_0030 0.86 -0.8 35,172 + Psyr_0030 0.86 -1.8 35,172 + Psyr_0030 0.86 -2.2 35,173 - Psyr_0030 0.87 +0.8 35,173 - Psyr_0030 0.87 -0.2 35,173 - Psyr_0030 0.87 +1.8 35,173 - Psyr_0030 0.87 -1.3 35,173 - Psyr_0030 0.87 +0.1 35,173 - Psyr_0030 0.87 +2.2
Or see this region's nucleotide sequence