Experiment: apoplastic; Green bean; 13 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0020 and Psyr_0021 are separated by 123 nucleotides Psyr_0021 and Psyr_0022 are separated by 38 nucleotides Psyr_0022 and Psyr_0023 are separated by 36 nucleotides
Psyr_0020: Psyr_0020 - Peptidoglycan-binding LysM, at 23,672 to 24,697
_0020
Psyr_0021: Psyr_0021 - DNA protecting protein DprA, at 24,821 to 25,939
_0021
Psyr_0022: Psyr_0022 - translation factor SUA5, at 25,978 to 26,535
_0022
Psyr_0023: Psyr_0023 - Zinc-containing alcohol dehydrogenase superfamily, at 26,572 to 27,549
_0023
Position (kb) 24
25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 23.987 kb on - strand, within Psyr_0020 at 24.092 kb on + strand, within Psyr_0020 at 24.092 kb on + strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.093 kb on - strand, within Psyr_0020 at 24.146 kb on + strand, within Psyr_0020 at 24.147 kb on - strand, within Psyr_0020 at 24.147 kb on - strand, within Psyr_0020 at 24.182 kb on + strand, within Psyr_0020 at 24.183 kb on - strand, within Psyr_0020 at 24.183 kb on - strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.209 kb on + strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.210 kb on - strand, within Psyr_0020 at 24.349 kb on - strand, within Psyr_0020 at 24.349 kb on - strand, within Psyr_0020 at 24.371 kb on - strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.527 kb on + strand, within Psyr_0020 at 24.528 kb on - strand, within Psyr_0020 at 24.528 kb on - strand, within Psyr_0020 at 24.620 kb on + strand at 24.620 kb on + strand at 24.620 kb on + strand at 24.621 kb on - strand at 24.621 kb on - strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.631 kb on + strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.632 kb on - strand at 24.635 kb on + strand at 24.745 kb on + strand at 24.745 kb on + strand at 24.745 kb on + strand at 24.745 kb on + strand at 24.746 kb on - strand at 24.769 kb on - strand at 24.897 kb on + strand at 25.348 kb on + strand, within Psyr_0021 at 25.348 kb on + strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.349 kb on - strand, within Psyr_0021 at 25.527 kb on + strand, within Psyr_0021 at 25.528 kb on - strand, within Psyr_0021 at 25.528 kb on - strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.604 kb on + strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.605 kb on - strand, within Psyr_0021 at 25.612 kb on - strand, within Psyr_0021 at 25.659 kb on + strand, within Psyr_0021 at 25.660 kb on - strand, within Psyr_0021 at 25.660 kb on - strand, within Psyr_0021 at 25.729 kb on + strand, within Psyr_0021 at 25.786 kb on - strand, within Psyr_0021 at 25.861 kb on - strand at 25.899 kb on + strand at 25.899 kb on + strand at 25.900 kb on - strand at 25.943 kb on + strand at 26.652 kb on - strand at 26.652 kb on - strand at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.910 kb on - strand, within Psyr_0023
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 13 days remove 23,987 - Psyr_0020 0.31 -1.4 24,092 + Psyr_0020 0.41 +1.4 24,092 + Psyr_0020 0.41 -0.8 24,093 - Psyr_0020 0.41 -1.8 24,093 - Psyr_0020 0.41 -1.2 24,093 - Psyr_0020 0.41 +2.6 24,093 - Psyr_0020 0.41 +2.6 24,093 - Psyr_0020 0.41 -1.5 24,146 + Psyr_0020 0.46 -1.5 24,147 - Psyr_0020 0.46 +0.6 24,147 - Psyr_0020 0.46 -1.8 24,182 + Psyr_0020 0.50 -1.0 24,183 - Psyr_0020 0.50 -2.8 24,183 - Psyr_0020 0.50 -1.2 24,209 + Psyr_0020 0.52 -2.0 24,209 + Psyr_0020 0.52 +0.6 24,209 + Psyr_0020 0.52 -1.0 24,209 + Psyr_0020 0.52 +1.2 24,209 + Psyr_0020 0.52 -1.2 24,209 + Psyr_0020 0.52 -1.2 24,209 + Psyr_0020 0.52 -1.8 24,210 - Psyr_0020 0.52 -2.4 24,210 - Psyr_0020 0.52 +1.5 24,210 - Psyr_0020 0.52 -1.3 24,210 - Psyr_0020 0.52 -1.5 24,210 - Psyr_0020 0.52 -0.2 24,210 - Psyr_0020 0.52 -2.0 24,210 - Psyr_0020 0.52 +0.2 24,349 - Psyr_0020 0.66 +1.2 24,349 - Psyr_0020 0.66 +2.1 24,371 - Psyr_0020 0.68 +3.9 24,527 + Psyr_0020 0.83 +1.7 24,527 + Psyr_0020 0.83 -0.5 24,527 + Psyr_0020 0.83 -2.0 24,527 + Psyr_0020 0.83 -0.8 24,528 - Psyr_0020 0.83 +0.5 24,528 - Psyr_0020 0.83 -0.8 24,620 + -0.3 24,620 + -3.4 24,620 + +2.2 24,621 - -1.4 24,621 - -2.0 24,631 + -2.0 24,631 + -0.1 24,631 + -2.2 24,631 + -2.0 24,631 + -0.2 24,631 + +1.6 24,631 + -0.6 24,631 + -1.8 24,631 + -0.2 24,631 + -1.5 24,631 + +2.1 24,631 + -1.2 24,632 - +0.5 24,632 - -2.2 24,632 - +2.4 24,632 - +0.5 24,632 - -2.2 24,632 - -1.0 24,632 - -0.0 24,632 - -0.8 24,632 - -0.8 24,632 - -0.7 24,632 - +3.0 24,635 + -2.0 24,745 + +3.9 24,745 + -2.2 24,745 + +0.9 24,745 + +0.1 24,746 - +0.6 24,769 - -0.1 24,897 + -3.0 25,348 + Psyr_0021 0.47 +1.1 25,348 + Psyr_0021 0.47 -0.4 25,349 - Psyr_0021 0.47 +5.0 25,349 - Psyr_0021 0.47 -2.0 25,349 - Psyr_0021 0.47 -1.5 25,349 - Psyr_0021 0.47 -2.2 25,527 + Psyr_0021 0.63 +0.0 25,528 - Psyr_0021 0.63 +0.7 25,528 - Psyr_0021 0.63 +3.5 25,604 + Psyr_0021 0.70 +0.5 25,604 + Psyr_0021 0.70 -0.3 25,604 + Psyr_0021 0.70 -3.3 25,604 + Psyr_0021 0.70 -1.0 25,604 + Psyr_0021 0.70 -0.3 25,604 + Psyr_0021 0.70 -0.4 25,604 + Psyr_0021 0.70 +0.7 25,605 - Psyr_0021 0.70 +0.6 25,605 - Psyr_0021 0.70 -0.8 25,605 - Psyr_0021 0.70 +1.0 25,605 - Psyr_0021 0.70 +0.8 25,605 - Psyr_0021 0.70 +0.2 25,605 - Psyr_0021 0.70 -3.9 25,605 - Psyr_0021 0.70 -0.6 25,612 - Psyr_0021 0.71 -0.5 25,659 + Psyr_0021 0.75 -1.8 25,660 - Psyr_0021 0.75 +0.4 25,660 - Psyr_0021 0.75 -2.0 25,729 + Psyr_0021 0.81 -0.8 25,786 - Psyr_0021 0.86 -0.8 25,861 - +1.0 25,899 + -2.2 25,899 + +0.1 25,900 - -1.8 25,943 + -0.5 26,652 - +2.6 26,652 - +1.6 26,771 + Psyr_0023 0.20 -0.2 26,771 + Psyr_0023 0.20 +0.4 26,771 + Psyr_0023 0.20 -0.1 26,771 + Psyr_0023 0.20 -1.2 26,771 + Psyr_0023 0.20 +1.5 26,771 + Psyr_0023 0.20 +0.4 26,771 + Psyr_0023 0.20 -1.5 26,771 + Psyr_0023 0.20 +0.2 26,772 - Psyr_0023 0.20 -0.9 26,772 - Psyr_0023 0.20 -1.3 26,772 - Psyr_0023 0.20 -3.3 26,772 - Psyr_0023 0.20 -2.5 26,772 - Psyr_0023 0.20 -1.2 26,772 - Psyr_0023 0.20 -2.2 26,772 - Psyr_0023 0.20 +0.0 26,772 - Psyr_0023 0.20 -0.8 26,772 - Psyr_0023 0.20 -2.0 26,910 - Psyr_0023 0.35 -0.2
Or see this region's nucleotide sequence