Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16520

Experiment: Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16515 and BWI76_RS16520 are separated by 111 nucleotidesBWI76_RS16520 and BWI76_RS16525 are separated by 298 nucleotides BWI76_RS16515: BWI76_RS16515 - LysR family transcriptional regulator, at 3,423,546 to 3,424,457 _RS16515 BWI76_RS16520: BWI76_RS16520 - Bcr/CflA family multidrug efflux MFS transporter, at 3,424,569 to 3,425,753 _RS16520 BWI76_RS16525: BWI76_RS16525 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,426,052 to 3,427,203 _RS16525 Position (kb) 3424 3425 3426Strain fitness (log2 ratio) -2 -1 0 1 2at 3423.615 kb on - strandat 3423.615 kb on - strandat 3423.853 kb on + strand, within BWI76_RS16515at 3424.076 kb on + strand, within BWI76_RS16515at 3424.390 kb on - strandat 3424.511 kb on + strandat 3424.518 kb on - strandat 3424.519 kb on - strandat 3424.519 kb on - strandat 3424.523 kb on + strandat 3424.530 kb on - strandat 3424.934 kb on + strand, within BWI76_RS16520at 3425.036 kb on - strand, within BWI76_RS16520at 3425.116 kb on - strand, within BWI76_RS16520at 3425.209 kb on - strand, within BWI76_RS16520at 3425.305 kb on - strand, within BWI76_RS16520at 3425.341 kb on - strand, within BWI76_RS16520at 3425.439 kb on + strand, within BWI76_RS16520at 3425.672 kb on + strandat 3425.711 kb on + strandat 3425.711 kb on + strandat 3425.747 kb on + strandat 3425.937 kb on + strandat 3426.013 kb on + strandat 3426.013 kb on + strandat 3426.214 kb on + strand, within BWI76_RS16525at 3426.658 kb on - strand, within BWI76_RS16525

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
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3,423,615 - +0.8
3,423,615 - -0.6
3,423,853 + BWI76_RS16515 0.34 +1.0
3,424,076 + BWI76_RS16515 0.58 -2.4
3,424,390 - +0.7
3,424,511 + -0.1
3,424,518 - -0.4
3,424,519 - +0.1
3,424,519 - -0.2
3,424,523 + -0.4
3,424,530 - +0.5
3,424,934 + BWI76_RS16520 0.31 +0.3
3,425,036 - BWI76_RS16520 0.39 +0.8
3,425,116 - BWI76_RS16520 0.46 +1.2
3,425,209 - BWI76_RS16520 0.54 +1.0
3,425,305 - BWI76_RS16520 0.62 +0.3
3,425,341 - BWI76_RS16520 0.65 +1.0
3,425,439 + BWI76_RS16520 0.73 +0.7
3,425,672 + +0.2
3,425,711 + -0.5
3,425,711 + +0.3
3,425,747 + -0.0
3,425,937 + +1.0
3,426,013 + +1.2
3,426,013 + +2.2
3,426,214 + BWI76_RS16525 0.14 +2.0
3,426,658 - BWI76_RS16525 0.53 +1.2

Or see this region's nucleotide sequence