Experiment: 4C survival; 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25425 and AO356_25430 are separated by 5 nucleotides AO356_25430 and AO356_25435 are separated by 102 nucleotides AO356_25435 and AO356_25440 overlap by 4 nucleotides
AO356_25425: AO356_25425 - AraC family transcriptional regulator, at 5,750,109 to 5,750,927
_25425
AO356_25430: AO356_25430 - phosphatidylethanolamine-binding protein, at 5,750,933 to 5,751,472
_25430
AO356_25435: AO356_25435 - nodulation protein NolW, at 5,751,575 to 5,752,234
_25435
AO356_25440: AO356_25440 - histidine kinase, at 5,752,231 to 5,753,682
_25440
Position (kb) 5751
5752
5753 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5750.580 kb on + strand, within AO356_25425 at 5750.580 kb on + strand, within AO356_25425 at 5750.580 kb on + strand, within AO356_25425 at 5750.580 kb on + strand, within AO356_25425 at 5750.580 kb on + strand, within AO356_25425 at 5750.581 kb on - strand, within AO356_25425 at 5750.625 kb on - strand, within AO356_25425 at 5750.625 kb on - strand, within AO356_25425 at 5750.642 kb on + strand, within AO356_25425 at 5750.683 kb on + strand, within AO356_25425 at 5750.683 kb on + strand, within AO356_25425 at 5750.683 kb on + strand, within AO356_25425 at 5750.684 kb on - strand, within AO356_25425 at 5750.871 kb on + strand at 5750.872 kb on - strand at 5750.907 kb on + strand at 5750.907 kb on + strand at 5750.907 kb on + strand at 5750.907 kb on + strand at 5750.908 kb on - strand at 5750.908 kb on - strand at 5750.992 kb on - strand, within AO356_25430 at 5751.035 kb on - strand, within AO356_25430 at 5751.140 kb on + strand, within AO356_25430 at 5751.140 kb on + strand, within AO356_25430 at 5751.141 kb on - strand, within AO356_25430 at 5751.141 kb on - strand, within AO356_25430 at 5751.184 kb on + strand, within AO356_25430 at 5751.185 kb on - strand, within AO356_25430 at 5751.185 kb on - strand, within AO356_25430 at 5751.185 kb on - strand, within AO356_25430 at 5751.190 kb on + strand, within AO356_25430 at 5751.205 kb on + strand, within AO356_25430 at 5751.205 kb on + strand, within AO356_25430 at 5751.255 kb on + strand, within AO356_25430 at 5751.271 kb on - strand, within AO356_25430 at 5751.271 kb on - strand, within AO356_25430 at 5751.278 kb on - strand, within AO356_25430 at 5751.418 kb on - strand, within AO356_25430 at 5751.432 kb on - strand at 5751.510 kb on + strand at 5751.797 kb on + strand, within AO356_25435 at 5751.797 kb on + strand, within AO356_25435 at 5751.798 kb on - strand, within AO356_25435 at 5752.031 kb on + strand, within AO356_25435 at 5752.032 kb on - strand, within AO356_25435 at 5752.077 kb on + strand, within AO356_25435 at 5752.077 kb on + strand, within AO356_25435 at 5752.077 kb on + strand, within AO356_25435 at 5752.181 kb on - strand at 5752.182 kb on + strand at 5752.182 kb on + strand at 5752.182 kb on + strand at 5752.182 kb on + strand at 5752.183 kb on - strand at 5752.495 kb on + strand, within AO356_25440 at 5752.516 kb on + strand, within AO356_25440 at 5752.517 kb on - strand, within AO356_25440 at 5752.642 kb on - strand, within AO356_25440 at 5753.067 kb on + strand, within AO356_25440 at 5753.068 kb on - strand, within AO356_25440
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 24 hrs remove 5,750,580 + AO356_25425 0.58 +0.7 5,750,580 + AO356_25425 0.58 -1.6 5,750,580 + AO356_25425 0.58 -0.3 5,750,580 + AO356_25425 0.58 +0.4 5,750,580 + AO356_25425 0.58 +0.5 5,750,581 - AO356_25425 0.58 +0.1 5,750,625 - AO356_25425 0.63 +0.8 5,750,625 - AO356_25425 0.63 -0.2 5,750,642 + AO356_25425 0.65 +0.5 5,750,683 + AO356_25425 0.70 -0.2 5,750,683 + AO356_25425 0.70 -0.2 5,750,683 + AO356_25425 0.70 +1.3 5,750,684 - AO356_25425 0.70 -0.2 5,750,871 + +0.6 5,750,872 - +1.4 5,750,907 + -0.6 5,750,907 + +0.4 5,750,907 + +0.3 5,750,907 + +0.7 5,750,908 - -1.7 5,750,908 - +0.5 5,750,992 - AO356_25430 0.11 -0.0 5,751,035 - AO356_25430 0.19 -0.1 5,751,140 + AO356_25430 0.38 +1.2 5,751,140 + AO356_25430 0.38 -0.2 5,751,141 - AO356_25430 0.39 -0.3 5,751,141 - AO356_25430 0.39 +0.7 5,751,184 + AO356_25430 0.46 +0.3 5,751,185 - AO356_25430 0.47 +0.5 5,751,185 - AO356_25430 0.47 +0.3 5,751,185 - AO356_25430 0.47 +1.3 5,751,190 + AO356_25430 0.48 -0.2 5,751,205 + AO356_25430 0.50 -0.1 5,751,205 + AO356_25430 0.50 +0.6 5,751,255 + AO356_25430 0.60 -0.1 5,751,271 - AO356_25430 0.63 +0.2 5,751,271 - AO356_25430 0.63 -0.1 5,751,278 - AO356_25430 0.64 +1.2 5,751,418 - AO356_25430 0.90 -0.5 5,751,432 - +2.0 5,751,510 + -0.7 5,751,797 + AO356_25435 0.34 +1.3 5,751,797 + AO356_25435 0.34 +1.2 5,751,798 - AO356_25435 0.34 +1.1 5,752,031 + AO356_25435 0.69 +0.9 5,752,032 - AO356_25435 0.69 -0.3 5,752,077 + AO356_25435 0.76 -0.1 5,752,077 + AO356_25435 0.76 +0.7 5,752,077 + AO356_25435 0.76 -0.7 5,752,181 - -1.4 5,752,182 + -0.6 5,752,182 + -0.6 5,752,182 + +0.1 5,752,182 + -1.8 5,752,183 - +0.9 5,752,495 + AO356_25440 0.18 -0.4 5,752,516 + AO356_25440 0.20 +0.2 5,752,517 - AO356_25440 0.20 -2.2 5,752,642 - AO356_25440 0.28 +0.2 5,753,067 + AO356_25440 0.58 +1.9 5,753,068 - AO356_25440 0.58 -1.3
Or see this region's nucleotide sequence