Experiment: 4C survival; 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24710 and AO356_24715 are separated by 330 nucleotides AO356_24715 and AO356_24720 are separated by 120 nucleotides AO356_24720 and AO356_24725 are separated by 195 nucleotides AO356_24725 and AO356_24730 are separated by 155 nucleotides
AO356_24710: AO356_24710 - cupin, at 5,592,261 to 5,592,665
_24710
AO356_24715: AO356_24715 - antibiotic biosynthesis monooxygenase, at 5,592,996 to 5,593,289
_24715
AO356_24720: AO356_24720 - DNA-binding protein, at 5,593,410 to 5,594,843
_24720
AO356_24725: AO356_24725 - alkylhydroperoxidase, at 5,595,039 to 5,595,479
_24725
AO356_24730: AO356_24730 - hypothetical protein, at 5,595,635 to 5,595,961
_24730
Position (kb) 5593
5594
5595 Strain fitness (log2 ratio) -2
-1
0
1 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.610 kb on + strand, within AO356_24710 at 5592.652 kb on + strand at 5592.653 kb on - strand at 5592.726 kb on - strand at 5593.166 kb on + strand, within AO356_24715 at 5593.167 kb on - strand, within AO356_24715 at 5593.167 kb on - strand, within AO356_24715 at 5593.168 kb on + strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.263 kb on + strand at 5593.391 kb on + strand at 5593.392 kb on - strand at 5593.540 kb on + strand at 5593.616 kb on + strand, within AO356_24720 at 5593.616 kb on + strand, within AO356_24720 at 5593.617 kb on - strand, within AO356_24720 at 5593.617 kb on - strand, within AO356_24720 at 5593.706 kb on - strand, within AO356_24720 at 5593.706 kb on - strand, within AO356_24720 at 5593.978 kb on + strand, within AO356_24720 at 5593.978 kb on + strand, within AO356_24720 at 5594.089 kb on + strand, within AO356_24720 at 5594.089 kb on + strand, within AO356_24720 at 5594.090 kb on - strand, within AO356_24720 at 5594.383 kb on + strand, within AO356_24720 at 5594.385 kb on + strand, within AO356_24720 at 5594.385 kb on + strand, within AO356_24720 at 5594.386 kb on - strand, within AO356_24720 at 5594.488 kb on + strand, within AO356_24720 at 5594.621 kb on - strand, within AO356_24720 at 5594.621 kb on - strand, within AO356_24720 at 5594.621 kb on - strand, within AO356_24720 at 5594.660 kb on - strand, within AO356_24720 at 5594.674 kb on + strand, within AO356_24720 at 5594.675 kb on - strand, within AO356_24720 at 5594.675 kb on - strand, within AO356_24720 at 5594.791 kb on + strand at 5594.917 kb on + strand at 5594.918 kb on - strand at 5594.918 kb on - strand at 5595.060 kb on + strand at 5595.060 kb on + strand at 5595.061 kb on - strand at 5595.061 kb on - strand at 5595.061 kb on - strand at 5595.246 kb on + strand, within AO356_24725 at 5595.360 kb on + strand, within AO356_24725 at 5595.360 kb on + strand, within AO356_24725 at 5595.361 kb on - strand, within AO356_24725 at 5595.688 kb on + strand, within AO356_24730 at 5595.689 kb on - strand, within AO356_24730 at 5595.841 kb on - strand, within AO356_24730
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 24 hrs remove 5,592,457 + AO356_24710 0.48 -0.4 5,592,457 + AO356_24710 0.48 +0.1 5,592,457 + AO356_24710 0.48 -0.4 5,592,512 - AO356_24710 0.62 +1.0 5,592,512 - AO356_24710 0.62 +0.5 5,592,610 + AO356_24710 0.86 +0.9 5,592,652 + -0.6 5,592,653 - +0.5 5,592,726 - +0.4 5,593,166 + AO356_24715 0.58 +0.5 5,593,167 - AO356_24715 0.58 -0.1 5,593,167 - AO356_24715 0.58 +0.1 5,593,168 + AO356_24715 0.59 -0.1 5,593,169 - AO356_24715 0.59 +0.2 5,593,169 - AO356_24715 0.59 -0.5 5,593,169 - AO356_24715 0.59 +0.8 5,593,169 - AO356_24715 0.59 -0.3 5,593,263 + +0.9 5,593,391 + +0.9 5,593,392 - +0.4 5,593,540 + +0.4 5,593,616 + AO356_24720 0.14 +0.3 5,593,616 + AO356_24720 0.14 -0.2 5,593,617 - AO356_24720 0.14 +0.7 5,593,617 - AO356_24720 0.14 +1.1 5,593,706 - AO356_24720 0.21 -1.0 5,593,706 - AO356_24720 0.21 +0.3 5,593,978 + AO356_24720 0.40 +0.4 5,593,978 + AO356_24720 0.40 +0.0 5,594,089 + AO356_24720 0.47 -0.5 5,594,089 + AO356_24720 0.47 +0.8 5,594,090 - AO356_24720 0.47 +0.3 5,594,383 + AO356_24720 0.68 +0.2 5,594,385 + AO356_24720 0.68 -2.1 5,594,385 + AO356_24720 0.68 -0.5 5,594,386 - AO356_24720 0.68 +0.2 5,594,488 + AO356_24720 0.75 +1.7 5,594,621 - AO356_24720 0.84 -0.5 5,594,621 - AO356_24720 0.84 +0.5 5,594,621 - AO356_24720 0.84 +0.8 5,594,660 - AO356_24720 0.87 +1.1 5,594,674 + AO356_24720 0.88 -0.0 5,594,675 - AO356_24720 0.88 +0.7 5,594,675 - AO356_24720 0.88 +0.1 5,594,791 + -0.0 5,594,917 + -0.1 5,594,918 - -0.5 5,594,918 - -0.4 5,595,060 + -0.7 5,595,060 + -1.2 5,595,061 - -0.9 5,595,061 - +0.3 5,595,061 - +0.7 5,595,246 + AO356_24725 0.47 +0.5 5,595,360 + AO356_24725 0.73 +1.2 5,595,360 + AO356_24725 0.73 +0.1 5,595,361 - AO356_24725 0.73 -0.7 5,595,688 + AO356_24730 0.16 +0.3 5,595,689 - AO356_24730 0.17 -0.7 5,595,841 - AO356_24730 0.63 +0.6
Or see this region's nucleotide sequence