Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14830

Experiment: 4C survival; 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14825 and AO356_14830 are separated by 371 nucleotidesAO356_14830 and AO356_14835 overlap by 11 nucleotidesAO356_14835 and AO356_14840 are separated by 132 nucleotides AO356_14825: AO356_14825 - AraC family transcriptional regulator, at 3,354,273 to 3,355,268 _14825 AO356_14830: AO356_14830 - biotin carboxylase, at 3,355,640 to 3,356,743 _14830 AO356_14835: AO356_14835 - permease, at 3,356,733 to 3,357,491 _14835 AO356_14840: AO356_14840 - hypothetical protein, at 3,357,624 to 3,358,625 _14840 Position (kb) 3355 3356 3357Strain fitness (log2 ratio) -2 -1 0 1 2at 3354.896 kb on + strand, within AO356_14825at 3355.072 kb on - strand, within AO356_14825at 3355.312 kb on - strandat 3355.312 kb on - strandat 3355.403 kb on + strandat 3355.403 kb on + strandat 3355.403 kb on + strandat 3355.404 kb on - strandat 3355.523 kb on + strandat 3355.524 kb on - strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.597 kb on + strandat 3355.598 kb on - strandat 3355.598 kb on - strandat 3355.598 kb on - strandat 3355.598 kb on - strandat 3355.598 kb on - strandat 3355.598 kb on - strandat 3355.603 kb on + strandat 3355.603 kb on + strandat 3355.603 kb on + strandat 3355.603 kb on + strandat 3355.603 kb on + strandat 3355.603 kb on + strandat 3355.604 kb on - strandat 3355.607 kb on + strandat 3355.607 kb on + strandat 3355.607 kb on + strandat 3355.607 kb on + strandat 3355.607 kb on + strandat 3355.607 kb on + strandat 3355.607 kb on + strandat 3355.607 kb on + strandat 3355.608 kb on - strandat 3355.608 kb on - strandat 3355.608 kb on - strandat 3355.608 kb on - strandat 3355.608 kb on - strandat 3355.608 kb on - strandat 3355.677 kb on - strandat 3355.763 kb on + strand, within AO356_14830at 3355.802 kb on + strand, within AO356_14830at 3355.802 kb on + strand, within AO356_14830at 3355.802 kb on + strand, within AO356_14830at 3355.802 kb on + strand, within AO356_14830at 3355.802 kb on + strand, within AO356_14830at 3355.802 kb on + strand, within AO356_14830at 3355.803 kb on - strand, within AO356_14830at 3355.803 kb on - strand, within AO356_14830at 3355.803 kb on - strand, within AO356_14830at 3355.886 kb on + strand, within AO356_14830at 3355.886 kb on + strand, within AO356_14830at 3355.886 kb on + strand, within AO356_14830at 3355.887 kb on - strand, within AO356_14830at 3355.887 kb on - strand, within AO356_14830at 3355.887 kb on - strand, within AO356_14830at 3355.887 kb on - strand, within AO356_14830at 3355.887 kb on - strand, within AO356_14830at 3355.887 kb on - strand, within AO356_14830at 3355.904 kb on - strand, within AO356_14830at 3355.904 kb on - strand, within AO356_14830at 3355.940 kb on - strand, within AO356_14830at 3356.063 kb on + strand, within AO356_14830at 3356.063 kb on + strand, within AO356_14830at 3356.063 kb on + strand, within AO356_14830at 3356.064 kb on - strand, within AO356_14830at 3356.064 kb on - strand, within AO356_14830at 3356.064 kb on - strand, within AO356_14830at 3356.270 kb on + strand, within AO356_14830at 3356.270 kb on + strand, within AO356_14830at 3356.270 kb on + strand, within AO356_14830at 3356.270 kb on + strand, within AO356_14830at 3356.271 kb on - strand, within AO356_14830at 3356.271 kb on - strand, within AO356_14830at 3356.271 kb on - strand, within AO356_14830at 3356.271 kb on - strand, within AO356_14830at 3356.271 kb on - strand, within AO356_14830at 3356.319 kb on - strand, within AO356_14830at 3356.354 kb on + strand, within AO356_14830at 3356.354 kb on + strand, within AO356_14830at 3356.354 kb on + strand, within AO356_14830at 3356.355 kb on - strand, within AO356_14830at 3356.355 kb on - strand, within AO356_14830at 3356.355 kb on - strand, within AO356_14830at 3356.474 kb on + strand, within AO356_14830at 3356.474 kb on + strand, within AO356_14830at 3356.474 kb on + strand, within AO356_14830at 3356.475 kb on - strand, within AO356_14830at 3356.475 kb on - strand, within AO356_14830at 3356.475 kb on - strand, within AO356_14830at 3356.636 kb on + strandat 3356.637 kb on - strandat 3356.637 kb on - strandat 3356.637 kb on - strandat 3356.714 kb on + strandat 3356.714 kb on + strandat 3356.714 kb on + strandat 3356.714 kb on + strandat 3356.714 kb on + strandat 3356.714 kb on + strandat 3356.715 kb on - strandat 3356.715 kb on - strandat 3356.715 kb on - strandat 3356.718 kb on + strandat 3356.732 kb on + strandat 3356.732 kb on + strandat 3356.732 kb on + strandat 3356.733 kb on - strandat 3356.733 kb on - strandat 3356.733 kb on - strandat 3356.733 kb on - strandat 3356.741 kb on + strandat 3356.742 kb on - strandat 3356.742 kb on - strandat 3356.768 kb on - strandat 3356.833 kb on + strand, within AO356_14835at 3356.833 kb on + strand, within AO356_14835at 3356.833 kb on + strand, within AO356_14835at 3356.834 kb on - strand, within AO356_14835at 3357.001 kb on - strand, within AO356_14835at 3357.001 kb on - strand, within AO356_14835at 3357.032 kb on + strand, within AO356_14835at 3357.033 kb on - strand, within AO356_14835at 3357.033 kb on - strand, within AO356_14835at 3357.063 kb on + strand, within AO356_14835at 3357.064 kb on - strand, within AO356_14835at 3357.064 kb on - strand, within AO356_14835at 3357.198 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.297 kb on + strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.298 kb on - strand, within AO356_14835at 3357.417 kb on + strandat 3357.417 kb on + strandat 3357.417 kb on + strandat 3357.417 kb on + strandat 3357.417 kb on + strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.418 kb on - strandat 3357.550 kb on + strandat 3357.550 kb on + strandat 3357.551 kb on - strandat 3357.551 kb on - strandat 3357.551 kb on - strandat 3357.679 kb on + strandat 3357.679 kb on + strandat 3357.679 kb on + strandat 3357.679 kb on + strandat 3357.679 kb on + strandat 3357.680 kb on - strandat 3357.680 kb on - strandat 3357.680 kb on - strandat 3357.680 kb on - strandat 3357.680 kb on - strandat 3357.715 kb on + strandat 3357.715 kb on + strandat 3357.715 kb on + strandat 3357.715 kb on + strandat 3357.715 kb on + strandat 3357.715 kb on + strandat 3357.716 kb on - strandat 3357.716 kb on - strandat 3357.716 kb on - strandat 3357.716 kb on - strandat 3357.716 kb on - strandat 3357.716 kb on - strandat 3357.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 24 hrs
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3,354,896 + AO356_14825 0.63 -0.7
3,355,072 - AO356_14825 0.80 +0.0
3,355,312 - +0.5
3,355,312 - +0.2
3,355,403 + +0.2
3,355,403 + +1.0
3,355,403 + +0.1
3,355,404 - +0.4
3,355,523 + +0.2
3,355,524 - -1.5
3,355,597 + +0.1
3,355,597 + +0.0
3,355,597 + -0.1
3,355,597 + -1.6
3,355,597 + -0.1
3,355,597 + +0.9
3,355,597 + +0.5
3,355,597 + +0.1
3,355,597 + -1.3
3,355,597 + +0.8
3,355,597 + +0.3
3,355,597 + +0.5
3,355,597 + -0.3
3,355,597 + -0.4
3,355,598 - +0.5
3,355,598 - -0.0
3,355,598 - -0.6
3,355,598 - +0.6
3,355,598 - -0.4
3,355,598 - +0.1
3,355,603 + +0.6
3,355,603 + -0.4
3,355,603 + +0.6
3,355,603 + +0.3
3,355,603 + -0.7
3,355,603 + +0.5
3,355,604 - +0.2
3,355,607 + -0.2
3,355,607 + +0.0
3,355,607 + +1.2
3,355,607 + +0.3
3,355,607 + +0.6
3,355,607 + +0.6
3,355,607 + -1.0
3,355,607 + -1.2
3,355,608 - -1.0
3,355,608 - +0.6
3,355,608 - +0.0
3,355,608 - -0.6
3,355,608 - +0.1
3,355,608 - -0.0
3,355,677 - +0.2
3,355,763 + AO356_14830 0.11 +0.6
3,355,802 + AO356_14830 0.15 +0.7
3,355,802 + AO356_14830 0.15 +0.5
3,355,802 + AO356_14830 0.15 +0.3
3,355,802 + AO356_14830 0.15 -0.5
3,355,802 + AO356_14830 0.15 -1.6
3,355,802 + AO356_14830 0.15 -0.7
3,355,803 - AO356_14830 0.15 +1.2
3,355,803 - AO356_14830 0.15 -0.6
3,355,803 - AO356_14830 0.15 +0.5
3,355,886 + AO356_14830 0.22 +0.0
3,355,886 + AO356_14830 0.22 -0.2
3,355,886 + AO356_14830 0.22 +0.3
3,355,887 - AO356_14830 0.22 +2.0
3,355,887 - AO356_14830 0.22 +0.0
3,355,887 - AO356_14830 0.22 +0.7
3,355,887 - AO356_14830 0.22 +0.7
3,355,887 - AO356_14830 0.22 +0.2
3,355,887 - AO356_14830 0.22 +0.8
3,355,904 - AO356_14830 0.24 +1.3
3,355,904 - AO356_14830 0.24 -0.4
3,355,940 - AO356_14830 0.27 +0.1
3,356,063 + AO356_14830 0.38 +0.3
3,356,063 + AO356_14830 0.38 +0.2
3,356,063 + AO356_14830 0.38 +0.6
3,356,064 - AO356_14830 0.38 +0.2
3,356,064 - AO356_14830 0.38 -0.4
3,356,064 - AO356_14830 0.38 -0.4
3,356,270 + AO356_14830 0.57 +0.6
3,356,270 + AO356_14830 0.57 +0.9
3,356,270 + AO356_14830 0.57 -0.3
3,356,270 + AO356_14830 0.57 +0.8
3,356,271 - AO356_14830 0.57 +0.5
3,356,271 - AO356_14830 0.57 +1.2
3,356,271 - AO356_14830 0.57 -1.4
3,356,271 - AO356_14830 0.57 +0.6
3,356,271 - AO356_14830 0.57 -0.7
3,356,319 - AO356_14830 0.62 +0.1
3,356,354 + AO356_14830 0.65 -0.7
3,356,354 + AO356_14830 0.65 +0.5
3,356,354 + AO356_14830 0.65 +0.3
3,356,355 - AO356_14830 0.65 -1.0
3,356,355 - AO356_14830 0.65 -0.2
3,356,355 - AO356_14830 0.65 +0.6
3,356,474 + AO356_14830 0.76 +0.8
3,356,474 + AO356_14830 0.76 -1.0
3,356,474 + AO356_14830 0.76 +0.6
3,356,475 - AO356_14830 0.76 +0.4
3,356,475 - AO356_14830 0.76 +0.1
3,356,475 - AO356_14830 0.76 +0.5
3,356,636 + +0.9
3,356,637 - -0.1
3,356,637 - +0.4
3,356,637 - +0.2
3,356,714 + -0.1
3,356,714 + +0.1
3,356,714 + -0.9
3,356,714 + -0.5
3,356,714 + +0.3
3,356,714 + +0.8
3,356,715 - +0.9
3,356,715 - +0.8
3,356,715 - +0.2
3,356,718 + -0.0
3,356,732 + +0.7
3,356,732 + +0.5
3,356,732 + +0.7
3,356,733 - +0.5
3,356,733 - -0.4
3,356,733 - -1.6
3,356,733 - +0.7
3,356,741 + +0.0
3,356,742 - +0.2
3,356,742 - -0.3
3,356,768 - -0.5
3,356,833 + AO356_14835 0.13 -0.6
3,356,833 + AO356_14835 0.13 -0.4
3,356,833 + AO356_14835 0.13 +0.6
3,356,834 - AO356_14835 0.13 +1.5
3,357,001 - AO356_14835 0.35 +0.1
3,357,001 - AO356_14835 0.35 +0.2
3,357,032 + AO356_14835 0.39 -0.3
3,357,033 - AO356_14835 0.40 +1.5
3,357,033 - AO356_14835 0.40 +0.3
3,357,063 + AO356_14835 0.43 +0.6
3,357,064 - AO356_14835 0.44 +0.5
3,357,064 - AO356_14835 0.44 +0.5
3,357,198 + AO356_14835 0.61 +1.2
3,357,297 + AO356_14835 0.74 -0.5
3,357,297 + AO356_14835 0.74 +0.6
3,357,297 + AO356_14835 0.74 -0.1
3,357,297 + AO356_14835 0.74 +0.7
3,357,297 + AO356_14835 0.74 +0.8
3,357,297 + AO356_14835 0.74 +2.0
3,357,297 + AO356_14835 0.74 +0.5
3,357,297 + AO356_14835 0.74 +0.5
3,357,298 - AO356_14835 0.74 +0.2
3,357,298 - AO356_14835 0.74 +0.5
3,357,298 - AO356_14835 0.74 -0.6
3,357,298 - AO356_14835 0.74 -0.5
3,357,298 - AO356_14835 0.74 +0.3
3,357,298 - AO356_14835 0.74 -2.7
3,357,298 - AO356_14835 0.74 +0.8
3,357,298 - AO356_14835 0.74 +0.2
3,357,417 + +0.0
3,357,417 + -0.0
3,357,417 + -0.2
3,357,417 + -0.6
3,357,417 + -0.5
3,357,418 - +0.0
3,357,418 - +0.4
3,357,418 - +0.9
3,357,418 - +0.4
3,357,418 - +0.2
3,357,418 - +0.5
3,357,418 - +0.7
3,357,418 - +0.7
3,357,418 - -1.3
3,357,418 - +0.1
3,357,418 - -0.4
3,357,550 + -1.2
3,357,550 + -1.2
3,357,551 - +0.2
3,357,551 - -1.0
3,357,551 - -1.0
3,357,679 + +0.2
3,357,679 + +0.6
3,357,679 + +0.1
3,357,679 + -0.0
3,357,679 + -0.9
3,357,680 - +0.2
3,357,680 - -0.6
3,357,680 - -0.1
3,357,680 - +0.5
3,357,680 - -0.6
3,357,715 + -0.8
3,357,715 + -0.6
3,357,715 + +0.7
3,357,715 + -0.6
3,357,715 + -0.8
3,357,715 + +0.4
3,357,716 - -0.3
3,357,716 - -0.1
3,357,716 - +0.4
3,357,716 - -0.3
3,357,716 - -0.2
3,357,716 - -0.7
3,357,716 - -0.6

Or see this region's nucleotide sequence