Experiment: 4C survival; 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14825 and AO356_14830 are separated by 371 nucleotides AO356_14830 and AO356_14835 overlap by 11 nucleotides AO356_14835 and AO356_14840 are separated by 132 nucleotides
AO356_14825: AO356_14825 - AraC family transcriptional regulator, at 3,354,273 to 3,355,268
_14825
AO356_14830: AO356_14830 - biotin carboxylase, at 3,355,640 to 3,356,743
_14830
AO356_14835: AO356_14835 - permease, at 3,356,733 to 3,357,491
_14835
AO356_14840: AO356_14840 - hypothetical protein, at 3,357,624 to 3,358,625
_14840
Position (kb)
3355
3356
3357 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3354.896 kb on + strand, within AO356_14825 at 3355.072 kb on - strand, within AO356_14825 at 3355.312 kb on - strand at 3355.312 kb on - strand at 3355.403 kb on + strand at 3355.403 kb on + strand at 3355.403 kb on + strand at 3355.404 kb on - strand at 3355.523 kb on + strand at 3355.524 kb on - strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.597 kb on + strand at 3355.598 kb on - strand at 3355.598 kb on - strand at 3355.598 kb on - strand at 3355.598 kb on - strand at 3355.598 kb on - strand at 3355.598 kb on - strand at 3355.603 kb on + strand at 3355.603 kb on + strand at 3355.603 kb on + strand at 3355.603 kb on + strand at 3355.603 kb on + strand at 3355.603 kb on + strand at 3355.604 kb on - strand at 3355.607 kb on + strand at 3355.607 kb on + strand at 3355.607 kb on + strand at 3355.607 kb on + strand at 3355.607 kb on + strand at 3355.607 kb on + strand at 3355.607 kb on + strand at 3355.607 kb on + strand at 3355.608 kb on - strand at 3355.608 kb on - strand at 3355.608 kb on - strand at 3355.608 kb on - strand at 3355.608 kb on - strand at 3355.608 kb on - strand at 3355.677 kb on - strand at 3355.763 kb on + strand, within AO356_14830 at 3355.802 kb on + strand, within AO356_14830 at 3355.802 kb on + strand, within AO356_14830 at 3355.802 kb on + strand, within AO356_14830 at 3355.802 kb on + strand, within AO356_14830 at 3355.802 kb on + strand, within AO356_14830 at 3355.802 kb on + strand, within AO356_14830 at 3355.803 kb on - strand, within AO356_14830 at 3355.803 kb on - strand, within AO356_14830 at 3355.803 kb on - strand, within AO356_14830 at 3355.886 kb on + strand, within AO356_14830 at 3355.886 kb on + strand, within AO356_14830 at 3355.886 kb on + strand, within AO356_14830 at 3355.887 kb on - strand, within AO356_14830 at 3355.887 kb on - strand, within AO356_14830 at 3355.887 kb on - strand, within AO356_14830 at 3355.887 kb on - strand, within AO356_14830 at 3355.887 kb on - strand, within AO356_14830 at 3355.887 kb on - strand, within AO356_14830 at 3355.904 kb on - strand, within AO356_14830 at 3355.904 kb on - strand, within AO356_14830 at 3355.940 kb on - strand, within AO356_14830 at 3356.063 kb on + strand, within AO356_14830 at 3356.063 kb on + strand, within AO356_14830 at 3356.063 kb on + strand, within AO356_14830 at 3356.064 kb on - strand, within AO356_14830 at 3356.064 kb on - strand, within AO356_14830 at 3356.064 kb on - strand, within AO356_14830 at 3356.270 kb on + strand, within AO356_14830 at 3356.270 kb on + strand, within AO356_14830 at 3356.270 kb on + strand, within AO356_14830 at 3356.270 kb on + strand, within AO356_14830 at 3356.271 kb on - strand, within AO356_14830 at 3356.271 kb on - strand, within AO356_14830 at 3356.271 kb on - strand, within AO356_14830 at 3356.271 kb on - strand, within AO356_14830 at 3356.271 kb on - strand, within AO356_14830 at 3356.319 kb on - strand, within AO356_14830 at 3356.354 kb on + strand, within AO356_14830 at 3356.354 kb on + strand, within AO356_14830 at 3356.354 kb on + strand, within AO356_14830 at 3356.355 kb on - strand, within AO356_14830 at 3356.355 kb on - strand, within AO356_14830 at 3356.355 kb on - strand, within AO356_14830 at 3356.474 kb on + strand, within AO356_14830 at 3356.474 kb on + strand, within AO356_14830 at 3356.474 kb on + strand, within AO356_14830 at 3356.475 kb on - strand, within AO356_14830 at 3356.475 kb on - strand, within AO356_14830 at 3356.475 kb on - strand, within AO356_14830 at 3356.636 kb on + strand at 3356.637 kb on - strand at 3356.637 kb on - strand at 3356.637 kb on - strand at 3356.714 kb on + strand at 3356.714 kb on + strand at 3356.714 kb on + strand at 3356.714 kb on + strand at 3356.714 kb on + strand at 3356.714 kb on + strand at 3356.715 kb on - strand at 3356.715 kb on - strand at 3356.715 kb on - strand at 3356.718 kb on + strand at 3356.732 kb on + strand at 3356.732 kb on + strand at 3356.732 kb on + strand at 3356.733 kb on - strand at 3356.733 kb on - strand at 3356.733 kb on - strand at 3356.733 kb on - strand at 3356.741 kb on + strand at 3356.742 kb on - strand at 3356.742 kb on - strand at 3356.768 kb on - strand at 3356.833 kb on + strand, within AO356_14835 at 3356.833 kb on + strand, within AO356_14835 at 3356.833 kb on + strand, within AO356_14835 at 3356.834 kb on - strand, within AO356_14835 at 3357.001 kb on - strand, within AO356_14835 at 3357.001 kb on - strand, within AO356_14835 at 3357.032 kb on + strand, within AO356_14835 at 3357.033 kb on - strand, within AO356_14835 at 3357.033 kb on - strand, within AO356_14835 at 3357.063 kb on + strand, within AO356_14835 at 3357.064 kb on - strand, within AO356_14835 at 3357.064 kb on - strand, within AO356_14835 at 3357.198 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.297 kb on + strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.298 kb on - strand, within AO356_14835 at 3357.417 kb on + strand at 3357.417 kb on + strand at 3357.417 kb on + strand at 3357.417 kb on + strand at 3357.417 kb on + strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.418 kb on - strand at 3357.550 kb on + strand at 3357.550 kb on + strand at 3357.551 kb on - strand at 3357.551 kb on - strand at 3357.551 kb on - strand at 3357.679 kb on + strand at 3357.679 kb on + strand at 3357.679 kb on + strand at 3357.679 kb on + strand at 3357.679 kb on + strand at 3357.680 kb on - strand at 3357.680 kb on - strand at 3357.680 kb on - strand at 3357.680 kb on - strand at 3357.680 kb on - strand at 3357.715 kb on + strand at 3357.715 kb on + strand at 3357.715 kb on + strand at 3357.715 kb on + strand at 3357.715 kb on + strand at 3357.715 kb on + strand at 3357.716 kb on - strand at 3357.716 kb on - strand at 3357.716 kb on - strand at 3357.716 kb on - strand at 3357.716 kb on - strand at 3357.716 kb on - strand at 3357.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 24 hrs remove 3,354,896 + AO356_14825 0.63 -0.7 3,355,072 - AO356_14825 0.80 +0.0 3,355,312 - +0.5 3,355,312 - +0.2 3,355,403 + +0.2 3,355,403 + +1.0 3,355,403 + +0.1 3,355,404 - +0.4 3,355,523 + +0.2 3,355,524 - -1.5 3,355,597 + +0.1 3,355,597 + +0.0 3,355,597 + -0.1 3,355,597 + -1.6 3,355,597 + -0.1 3,355,597 + +0.9 3,355,597 + +0.5 3,355,597 + +0.1 3,355,597 + -1.3 3,355,597 + +0.8 3,355,597 + +0.3 3,355,597 + +0.5 3,355,597 + -0.3 3,355,597 + -0.4 3,355,598 - +0.5 3,355,598 - -0.0 3,355,598 - -0.6 3,355,598 - +0.6 3,355,598 - -0.4 3,355,598 - +0.1 3,355,603 + +0.6 3,355,603 + -0.4 3,355,603 + +0.6 3,355,603 + +0.3 3,355,603 + -0.7 3,355,603 + +0.5 3,355,604 - +0.2 3,355,607 + -0.2 3,355,607 + +0.0 3,355,607 + +1.2 3,355,607 + +0.3 3,355,607 + +0.6 3,355,607 + +0.6 3,355,607 + -1.0 3,355,607 + -1.2 3,355,608 - -1.0 3,355,608 - +0.6 3,355,608 - +0.0 3,355,608 - -0.6 3,355,608 - +0.1 3,355,608 - -0.0 3,355,677 - +0.2 3,355,763 + AO356_14830 0.11 +0.6 3,355,802 + AO356_14830 0.15 +0.7 3,355,802 + AO356_14830 0.15 +0.5 3,355,802 + AO356_14830 0.15 +0.3 3,355,802 + AO356_14830 0.15 -0.5 3,355,802 + AO356_14830 0.15 -1.6 3,355,802 + AO356_14830 0.15 -0.7 3,355,803 - AO356_14830 0.15 +1.2 3,355,803 - AO356_14830 0.15 -0.6 3,355,803 - AO356_14830 0.15 +0.5 3,355,886 + AO356_14830 0.22 +0.0 3,355,886 + AO356_14830 0.22 -0.2 3,355,886 + AO356_14830 0.22 +0.3 3,355,887 - AO356_14830 0.22 +2.0 3,355,887 - AO356_14830 0.22 +0.0 3,355,887 - AO356_14830 0.22 +0.7 3,355,887 - AO356_14830 0.22 +0.7 3,355,887 - AO356_14830 0.22 +0.2 3,355,887 - AO356_14830 0.22 +0.8 3,355,904 - AO356_14830 0.24 +1.3 3,355,904 - AO356_14830 0.24 -0.4 3,355,940 - AO356_14830 0.27 +0.1 3,356,063 + AO356_14830 0.38 +0.3 3,356,063 + AO356_14830 0.38 +0.2 3,356,063 + AO356_14830 0.38 +0.6 3,356,064 - AO356_14830 0.38 +0.2 3,356,064 - AO356_14830 0.38 -0.4 3,356,064 - AO356_14830 0.38 -0.4 3,356,270 + AO356_14830 0.57 +0.6 3,356,270 + AO356_14830 0.57 +0.9 3,356,270 + AO356_14830 0.57 -0.3 3,356,270 + AO356_14830 0.57 +0.8 3,356,271 - AO356_14830 0.57 +0.5 3,356,271 - AO356_14830 0.57 +1.2 3,356,271 - AO356_14830 0.57 -1.4 3,356,271 - AO356_14830 0.57 +0.6 3,356,271 - AO356_14830 0.57 -0.7 3,356,319 - AO356_14830 0.62 +0.1 3,356,354 + AO356_14830 0.65 -0.7 3,356,354 + AO356_14830 0.65 +0.5 3,356,354 + AO356_14830 0.65 +0.3 3,356,355 - AO356_14830 0.65 -1.0 3,356,355 - AO356_14830 0.65 -0.2 3,356,355 - AO356_14830 0.65 +0.6 3,356,474 + AO356_14830 0.76 +0.8 3,356,474 + AO356_14830 0.76 -1.0 3,356,474 + AO356_14830 0.76 +0.6 3,356,475 - AO356_14830 0.76 +0.4 3,356,475 - AO356_14830 0.76 +0.1 3,356,475 - AO356_14830 0.76 +0.5 3,356,636 + +0.9 3,356,637 - -0.1 3,356,637 - +0.4 3,356,637 - +0.2 3,356,714 + -0.1 3,356,714 + +0.1 3,356,714 + -0.9 3,356,714 + -0.5 3,356,714 + +0.3 3,356,714 + +0.8 3,356,715 - +0.9 3,356,715 - +0.8 3,356,715 - +0.2 3,356,718 + -0.0 3,356,732 + +0.7 3,356,732 + +0.5 3,356,732 + +0.7 3,356,733 - +0.5 3,356,733 - -0.4 3,356,733 - -1.6 3,356,733 - +0.7 3,356,741 + +0.0 3,356,742 - +0.2 3,356,742 - -0.3 3,356,768 - -0.5 3,356,833 + AO356_14835 0.13 -0.6 3,356,833 + AO356_14835 0.13 -0.4 3,356,833 + AO356_14835 0.13 +0.6 3,356,834 - AO356_14835 0.13 +1.5 3,357,001 - AO356_14835 0.35 +0.1 3,357,001 - AO356_14835 0.35 +0.2 3,357,032 + AO356_14835 0.39 -0.3 3,357,033 - AO356_14835 0.40 +1.5 3,357,033 - AO356_14835 0.40 +0.3 3,357,063 + AO356_14835 0.43 +0.6 3,357,064 - AO356_14835 0.44 +0.5 3,357,064 - AO356_14835 0.44 +0.5 3,357,198 + AO356_14835 0.61 +1.2 3,357,297 + AO356_14835 0.74 -0.5 3,357,297 + AO356_14835 0.74 +0.6 3,357,297 + AO356_14835 0.74 -0.1 3,357,297 + AO356_14835 0.74 +0.7 3,357,297 + AO356_14835 0.74 +0.8 3,357,297 + AO356_14835 0.74 +2.0 3,357,297 + AO356_14835 0.74 +0.5 3,357,297 + AO356_14835 0.74 +0.5 3,357,298 - AO356_14835 0.74 +0.2 3,357,298 - AO356_14835 0.74 +0.5 3,357,298 - AO356_14835 0.74 -0.6 3,357,298 - AO356_14835 0.74 -0.5 3,357,298 - AO356_14835 0.74 +0.3 3,357,298 - AO356_14835 0.74 -2.7 3,357,298 - AO356_14835 0.74 +0.8 3,357,298 - AO356_14835 0.74 +0.2 3,357,417 + +0.0 3,357,417 + -0.0 3,357,417 + -0.2 3,357,417 + -0.6 3,357,417 + -0.5 3,357,418 - +0.0 3,357,418 - +0.4 3,357,418 - +0.9 3,357,418 - +0.4 3,357,418 - +0.2 3,357,418 - +0.5 3,357,418 - +0.7 3,357,418 - +0.7 3,357,418 - -1.3 3,357,418 - +0.1 3,357,418 - -0.4 3,357,550 + -1.2 3,357,550 + -1.2 3,357,551 - +0.2 3,357,551 - -1.0 3,357,551 - -1.0 3,357,679 + +0.2 3,357,679 + +0.6 3,357,679 + +0.1 3,357,679 + -0.0 3,357,679 + -0.9 3,357,680 - +0.2 3,357,680 - -0.6 3,357,680 - -0.1 3,357,680 - +0.5 3,357,680 - -0.6 3,357,715 + -0.8 3,357,715 + -0.6 3,357,715 + +0.7 3,357,715 + -0.6 3,357,715 + -0.8 3,357,715 + +0.4 3,357,716 - -0.3 3,357,716 - -0.1 3,357,716 - +0.4 3,357,716 - -0.3 3,357,716 - -0.2 3,357,716 - -0.7 3,357,716 - -0.6
Or see this region's nucleotide sequence