Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22875

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22865 and ABZR87_RS22870 are separated by 70 nucleotidesABZR87_RS22870 and ABZR87_RS22875 are separated by 232 nucleotidesABZR87_RS22875 and ABZR87_RS22880 are separated by 127 nucleotides ABZR87_RS22865: ABZR87_RS22865 - hypothetical protein, at 1,489,931 to 1,490,257 _RS22865 ABZR87_RS22870: ABZR87_RS22870 - hypothetical protein, at 1,490,328 to 1,490,678 _RS22870 ABZR87_RS22875: ABZR87_RS22875 - chorismate mutase, at 1,490,911 to 1,491,465 _RS22875 ABZR87_RS22880: ABZR87_RS22880 - DegQ family serine endoprotease, at 1,491,593 to 1,493,074 _RS22880 Position (kb) 1490 1491 1492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1489.956 kb on - strandat 1490.073 kb on + strand, within ABZR87_RS22865at 1490.073 kb on + strand, within ABZR87_RS22865at 1490.073 kb on + strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.074 kb on - strand, within ABZR87_RS22865at 1490.103 kb on + strand, within ABZR87_RS22865at 1490.104 kb on - strand, within ABZR87_RS22865at 1490.187 kb on + strand, within ABZR87_RS22865at 1490.195 kb on + strand, within ABZR87_RS22865at 1490.196 kb on + strand, within ABZR87_RS22865at 1490.196 kb on - strand, within ABZR87_RS22865at 1490.196 kb on - strand, within ABZR87_RS22865at 1490.317 kb on - strandat 1490.507 kb on - strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.509 kb on + strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.510 kb on - strand, within ABZR87_RS22870at 1490.684 kb on + strandat 1490.684 kb on + strandat 1490.684 kb on + strandat 1490.734 kb on + strandat 1490.746 kb on + strandat 1490.746 kb on + strandat 1490.747 kb on - strandat 1490.747 kb on - strandat 1490.747 kb on - strandat 1490.756 kb on + strandat 1490.757 kb on - strandat 1490.757 kb on - strandat 1490.784 kb on - strandat 1490.835 kb on + strandat 1490.836 kb on - strandat 1490.836 kb on - strandat 1490.836 kb on - strandat 1490.901 kb on + strandat 1490.901 kb on + strandat 1490.901 kb on + strandat 1490.901 kb on + strandat 1491.199 kb on + strand, within ABZR87_RS22875at 1491.199 kb on + strand, within ABZR87_RS22875at 1491.200 kb on - strand, within ABZR87_RS22875at 1491.463 kb on + strandat 1491.464 kb on - strandat 1491.626 kb on - strandat 1491.626 kb on - strandat 1491.626 kb on - strandat 1491.626 kb on - strandat 1491.679 kb on + strandat 1491.967 kb on + strand, within ABZR87_RS22880at 1491.968 kb on - strand, within ABZR87_RS22880at 1491.968 kb on - strand, within ABZR87_RS22880at 1492.287 kb on + strand, within ABZR87_RS22880at 1492.288 kb on - strand, within ABZR87_RS22880at 1492.288 kb on - strand, within ABZR87_RS22880at 1492.388 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.389 kb on + strand, within ABZR87_RS22880at 1492.390 kb on + strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880at 1492.390 kb on - strand, within ABZR87_RS22880

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,489,956 - +0.2
1,490,073 + ABZR87_RS22865 0.43 -0.9
1,490,073 + ABZR87_RS22865 0.43 -0.8
1,490,073 + ABZR87_RS22865 0.43 -0.8
1,490,074 - ABZR87_RS22865 0.44 +3.6
1,490,074 - ABZR87_RS22865 0.44 +0.4
1,490,074 - ABZR87_RS22865 0.44 +2.8
1,490,074 - ABZR87_RS22865 0.44 +0.7
1,490,103 + ABZR87_RS22865 0.53 -0.2
1,490,104 - ABZR87_RS22865 0.53 -0.3
1,490,187 + ABZR87_RS22865 0.78 +0.8
1,490,195 + ABZR87_RS22865 0.81 +1.1
1,490,196 + ABZR87_RS22865 0.81 -0.9
1,490,196 - ABZR87_RS22865 0.81 +0.5
1,490,196 - ABZR87_RS22865 0.81 +0.2
1,490,317 - -2.2
1,490,507 - ABZR87_RS22870 0.51 -0.9
1,490,509 + ABZR87_RS22870 0.52 -0.1
1,490,509 + ABZR87_RS22870 0.52 -0.6
1,490,509 + ABZR87_RS22870 0.52 -0.8
1,490,509 + ABZR87_RS22870 0.52 +1.1
1,490,509 + ABZR87_RS22870 0.52 +0.3
1,490,510 - ABZR87_RS22870 0.52 +3.2
1,490,510 - ABZR87_RS22870 0.52 -0.8
1,490,510 - ABZR87_RS22870 0.52 -1.5
1,490,510 - ABZR87_RS22870 0.52 +0.4
1,490,684 + +0.7
1,490,684 + -0.3
1,490,684 + -0.3
1,490,734 + +0.2
1,490,746 + +4.4
1,490,746 + -0.8
1,490,747 - -0.0
1,490,747 - +0.9
1,490,747 - +0.7
1,490,756 + -0.1
1,490,757 - +1.1
1,490,757 - +0.4
1,490,784 - -0.8
1,490,835 + +0.2
1,490,836 - +0.8
1,490,836 - +0.6
1,490,836 - +1.9
1,490,901 + +0.2
1,490,901 + +0.4
1,490,901 + +0.1
1,490,901 + +0.4
1,491,199 + ABZR87_RS22875 0.52 -1.5
1,491,199 + ABZR87_RS22875 0.52 -1.4
1,491,200 - ABZR87_RS22875 0.52 -1.2
1,491,463 + -0.8
1,491,464 - +0.2
1,491,626 - +0.1
1,491,626 - -2.3
1,491,626 - -0.7
1,491,626 - +3.4
1,491,679 + +0.2
1,491,967 + ABZR87_RS22880 0.25 +0.7
1,491,968 - ABZR87_RS22880 0.25 -0.4
1,491,968 - ABZR87_RS22880 0.25 +1.3
1,492,287 + ABZR87_RS22880 0.47 -0.6
1,492,288 - ABZR87_RS22880 0.47 +0.1
1,492,288 - ABZR87_RS22880 0.47 +0.8
1,492,388 + ABZR87_RS22880 0.54 -0.5
1,492,389 + ABZR87_RS22880 0.54 +0.4
1,492,389 + ABZR87_RS22880 0.54 -1.9
1,492,389 + ABZR87_RS22880 0.54 +1.1
1,492,389 + ABZR87_RS22880 0.54 -0.3
1,492,389 + ABZR87_RS22880 0.54 -0.3
1,492,389 + ABZR87_RS22880 0.54 +0.8
1,492,389 + ABZR87_RS22880 0.54 -1.0
1,492,389 + ABZR87_RS22880 0.54 +0.3
1,492,389 + ABZR87_RS22880 0.54 -0.2
1,492,389 + ABZR87_RS22880 0.54 -0.5
1,492,389 + ABZR87_RS22880 0.54 -0.2
1,492,390 + ABZR87_RS22880 0.54 +2.2
1,492,390 - ABZR87_RS22880 0.54 -0.6
1,492,390 - ABZR87_RS22880 0.54 +1.2
1,492,390 - ABZR87_RS22880 0.54 -2.0
1,492,390 - ABZR87_RS22880 0.54 -3.0
1,492,390 - ABZR87_RS22880 0.54 +1.3
1,492,390 - ABZR87_RS22880 0.54 +1.3
1,492,390 - ABZR87_RS22880 0.54 -0.1
1,492,390 - ABZR87_RS22880 0.54 -0.3
1,492,390 - ABZR87_RS22880 0.54 -0.6
1,492,390 - ABZR87_RS22880 0.54 -1.8
1,492,390 - ABZR87_RS22880 0.54 +0.5
1,492,390 - ABZR87_RS22880 0.54 +0.1
1,492,390 - ABZR87_RS22880 0.54 -0.3

Or see this region's nucleotide sequence