Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22190 and ABZR87_RS22195 are separated by 1 nucleotides ABZR87_RS22195 and ABZR87_RS22200 overlap by 11 nucleotides ABZR87_RS22200 and ABZR87_RS22205 are separated by 68 nucleotides ABZR87_RS22205 and ABZR87_RS22210 overlap by 4 nucleotides
ABZR87_RS22190: ABZR87_RS22190 - flagellar basal body-associated protein FliL, at 1,343,823 to 1,344,320
_RS22190
ABZR87_RS22195: ABZR87_RS22195 - flagellar motor switch protein FliM, at 1,344,322 to 1,345,332
_RS22195
ABZR87_RS22200: ABZR87_RS22200 - flagellar motor switch protein FliN, at 1,345,322 to 1,345,789
_RS22200
ABZR87_RS22205: ABZR87_RS22205 - flagellar biosynthetic protein FliO, at 1,345,858 to 1,346,259
_RS22205
ABZR87_RS22210: ABZR87_RS22210 - flagellar type III secretion system pore protein FliP, at 1,346,256 to 1,347,005
_RS22210
Position (kb) 1344
1345
1346 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.495 kb on + strand at 1343.496 kb on - strand at 1343.496 kb on - strand at 1343.496 kb on - strand at 1343.496 kb on - strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.568 kb on + strand at 1343.569 kb on - strand at 1343.569 kb on - strand at 1343.569 kb on - strand at 1343.569 kb on - strand at 1343.577 kb on - strand at 1343.577 kb on - strand at 1343.577 kb on - strand at 1343.587 kb on + strand at 1343.587 kb on + strand at 1343.588 kb on - strand at 1343.588 kb on - strand at 1343.588 kb on - strand at 1343.588 kb on - strand at 1343.649 kb on - strand at 1343.666 kb on + strand at 1343.666 kb on + strand at 1343.666 kb on + strand at 1343.667 kb on - strand at 1343.667 kb on - strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.760 kb on + strand at 1343.761 kb on - strand at 1343.761 kb on - strand at 1343.804 kb on + strand at 1343.804 kb on + strand at 1343.805 kb on - strand at 1344.069 kb on + strand, within ABZR87_RS22190 at 1344.070 kb on - strand, within ABZR87_RS22190 at 1344.132 kb on + strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.133 kb on - strand, within ABZR87_RS22190 at 1344.134 kb on + strand, within ABZR87_RS22190 at 1344.134 kb on + strand, within ABZR87_RS22190 at 1344.135 kb on - strand, within ABZR87_RS22190 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.428 kb on + strand, within ABZR87_RS22195 at 1344.429 kb on - strand, within ABZR87_RS22195 at 1344.429 kb on - strand, within ABZR87_RS22195 at 1344.429 kb on - strand, within ABZR87_RS22195 at 1344.436 kb on + strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.437 kb on - strand, within ABZR87_RS22195 at 1344.589 kb on + strand, within ABZR87_RS22195 at 1344.589 kb on + strand, within ABZR87_RS22195 at 1344.590 kb on - strand, within ABZR87_RS22195 at 1344.762 kb on + strand, within ABZR87_RS22195 at 1344.817 kb on + strand, within ABZR87_RS22195 at 1344.818 kb on - strand, within ABZR87_RS22195 at 1344.818 kb on - strand, within ABZR87_RS22195 at 1344.841 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.969 kb on + strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.970 kb on - strand, within ABZR87_RS22195 at 1344.982 kb on + strand, within ABZR87_RS22195 at 1344.982 kb on + strand, within ABZR87_RS22195 at 1345.208 kb on + strand, within ABZR87_RS22195 at 1345.208 kb on + strand, within ABZR87_RS22195 at 1345.209 kb on - strand, within ABZR87_RS22195 at 1345.209 kb on - strand, within ABZR87_RS22195 at 1345.237 kb on + strand at 1345.238 kb on - strand at 1345.258 kb on + strand at 1345.259 kb on - strand at 1345.259 kb on - strand at 1345.287 kb on + strand at 1345.288 kb on - strand at 1345.288 kb on - strand at 1345.685 kb on + strand, within ABZR87_RS22200 at 1345.768 kb on + strand at 1345.768 kb on + strand at 1345.768 kb on + strand at 1345.774 kb on + strand at 1345.800 kb on + strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.890 kb on - strand at 1345.890 kb on - strand at 1345.890 kb on - strand at 1345.905 kb on - strand, within ABZR87_RS22205 at 1345.905 kb on - strand, within ABZR87_RS22205 at 1345.905 kb on - strand, within ABZR87_RS22205 at 1345.905 kb on - strand, within ABZR87_RS22205 at 1345.905 kb on - strand, within ABZR87_RS22205 at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.267 kb on + strand at 1346.268 kb on - strand at 1346.268 kb on - strand at 1346.268 kb on - strand at 1346.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,343,495 + -0.5 1,343,495 + +1.6 1,343,495 + -0.2 1,343,495 + +1.1 1,343,495 + -0.7 1,343,495 + -0.2 1,343,495 + +0.3 1,343,495 + +0.5 1,343,496 - +0.1 1,343,496 - -0.2 1,343,496 - +0.6 1,343,496 - -0.9 1,343,568 + -0.8 1,343,568 + -0.7 1,343,568 + +0.4 1,343,568 + +1.0 1,343,568 + -0.2 1,343,569 - +1.7 1,343,569 - -1.8 1,343,569 - -1.4 1,343,569 - -0.8 1,343,577 - -0.3 1,343,577 - -0.6 1,343,577 - +1.0 1,343,587 + -0.1 1,343,587 + +1.2 1,343,588 - +0.3 1,343,588 - +0.3 1,343,588 - +1.0 1,343,588 - -0.8 1,343,649 - -0.4 1,343,666 + +0.7 1,343,666 + +0.7 1,343,666 + +0.1 1,343,667 - +5.4 1,343,667 - +2.1 1,343,760 + -0.4 1,343,760 + +1.6 1,343,760 + -0.3 1,343,760 + -2.2 1,343,760 + -0.9 1,343,761 - +3.9 1,343,761 - +2.7 1,343,804 + +0.1 1,343,804 + -0.3 1,343,805 - +2.1 1,344,069 + ABZR87_RS22190 0.49 -1.1 1,344,070 - ABZR87_RS22190 0.50 +4.6 1,344,132 + ABZR87_RS22190 0.62 -0.9 1,344,133 - ABZR87_RS22190 0.62 +0.5 1,344,133 - ABZR87_RS22190 0.62 +1.3 1,344,133 - ABZR87_RS22190 0.62 +4.5 1,344,133 - ABZR87_RS22190 0.62 -0.1 1,344,133 - ABZR87_RS22190 0.62 +1.8 1,344,134 + ABZR87_RS22190 0.62 +1.1 1,344,134 + ABZR87_RS22190 0.62 -0.3 1,344,135 - ABZR87_RS22190 0.63 +3.0 1,344,428 + ABZR87_RS22195 0.10 -1.5 1,344,428 + ABZR87_RS22195 0.10 +0.3 1,344,428 + ABZR87_RS22195 0.10 +8.2 1,344,428 + ABZR87_RS22195 0.10 +1.8 1,344,429 - ABZR87_RS22195 0.11 +5.5 1,344,429 - ABZR87_RS22195 0.11 -0.8 1,344,429 - ABZR87_RS22195 0.11 +3.8 1,344,436 + ABZR87_RS22195 0.11 +0.8 1,344,437 - ABZR87_RS22195 0.11 +0.1 1,344,437 - ABZR87_RS22195 0.11 +1.6 1,344,437 - ABZR87_RS22195 0.11 +3.7 1,344,437 - ABZR87_RS22195 0.11 +3.0 1,344,589 + ABZR87_RS22195 0.26 +2.0 1,344,589 + ABZR87_RS22195 0.26 +0.5 1,344,590 - ABZR87_RS22195 0.27 +3.7 1,344,762 + ABZR87_RS22195 0.44 +2.9 1,344,817 + ABZR87_RS22195 0.49 +1.2 1,344,818 - ABZR87_RS22195 0.49 +3.7 1,344,818 - ABZR87_RS22195 0.49 +4.2 1,344,841 + ABZR87_RS22195 0.51 +0.4 1,344,969 + ABZR87_RS22195 0.64 +4.4 1,344,969 + ABZR87_RS22195 0.64 +1.2 1,344,969 + ABZR87_RS22195 0.64 +1.0 1,344,969 + ABZR87_RS22195 0.64 +1.1 1,344,969 + ABZR87_RS22195 0.64 +2.8 1,344,969 + ABZR87_RS22195 0.64 +2.5 1,344,969 + ABZR87_RS22195 0.64 +1.4 1,344,970 - ABZR87_RS22195 0.64 +2.7 1,344,970 - ABZR87_RS22195 0.64 +4.3 1,344,970 - ABZR87_RS22195 0.64 +4.4 1,344,970 - ABZR87_RS22195 0.64 +1.2 1,344,970 - ABZR87_RS22195 0.64 +5.2 1,344,970 - ABZR87_RS22195 0.64 +7.0 1,344,970 - ABZR87_RS22195 0.64 +1.7 1,344,970 - ABZR87_RS22195 0.64 +2.2 1,344,982 + ABZR87_RS22195 0.65 +2.5 1,344,982 + ABZR87_RS22195 0.65 +1.0 1,345,208 + ABZR87_RS22195 0.88 +2.7 1,345,208 + ABZR87_RS22195 0.88 +1.3 1,345,209 - ABZR87_RS22195 0.88 +5.8 1,345,209 - ABZR87_RS22195 0.88 +1.1 1,345,237 + +5.0 1,345,238 - +6.5 1,345,258 + +1.4 1,345,259 - +4.1 1,345,259 - +1.1 1,345,287 + +1.5 1,345,288 - +2.5 1,345,288 - +5.3 1,345,685 + ABZR87_RS22200 0.78 +1.5 1,345,768 + -1.2 1,345,768 + +0.7 1,345,768 + -0.6 1,345,774 + +2.2 1,345,800 + -0.1 1,345,801 - +8.9 1,345,801 - -0.4 1,345,890 - -0.0 1,345,890 - +3.1 1,345,890 - +3.0 1,345,905 - ABZR87_RS22205 0.12 +3.1 1,345,905 - ABZR87_RS22205 0.12 +2.2 1,345,905 - ABZR87_RS22205 0.12 +1.0 1,345,905 - ABZR87_RS22205 0.12 +1.2 1,345,905 - ABZR87_RS22205 0.12 +5.4 1,346,267 + +3.1 1,346,267 + +1.9 1,346,267 + +1.4 1,346,267 + +2.5 1,346,267 + +1.4 1,346,267 + -0.4 1,346,268 - +2.1 1,346,268 - +2.1 1,346,268 - +0.6 1,346,268 - +2.6
Or see this region's nucleotide sequence